Wall clock time and date at job start Wed Apr 1 2020 04:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46976 * 2 1 4 4 N 1.28705 * 126.03770 * 266.75574 * 3 2 1 5 5 N 1.28512 * 110.64431 * 180.02562 * 4 3 2 6 6 C 1.33328 * 109.43273 * 359.72238 * 5 4 3 7 7 C 1.37003 * 106.37032 * 0.43074 * 6 5 4 8 8 C 1.47229 * 127.18617 * 179.84553 * 7 6 5 9 9 O 1.21619 * 120.00136 * 186.62073 * 8 7 6 10 10 N 1.34782 * 120.00164 * 6.62538 * 8 7 6 11 11 C 1.49401 * 125.93938 * 179.27453 * 10 8 7 12 12 C 1.49055 * 104.08903 * 174.02049 * 11 10 8 13 13 H 1.08994 * 106.98055 * 283.85571 * 12 11 10 14 14 C 1.55932 * 102.46232 * 33.25888 * 12 11 10 15 15 H 1.09001 * 109.45710 * 66.49495 * 14 12 11 16 16 C 1.49665 * 125.93532 * 359.24386 * 10 8 7 17 17 C 1.51054 * 104.46899 * 183.72833 * 14 12 11 18 18 H 1.08996 * 113.45066 * 155.96170 * 17 14 12 19 19 C 1.54571 * 109.00290 * 28.58048 * 17 14 12 20 20 C 1.56815 * 107.51466 * 285.63587 * 19 17 14 21 21 C 1.49362 * 128.19548 * 157.31323 * 12 11 10 22 22 H 1.08993 * 112.90256 * 31.29429 * 21 12 11 23 23 C 1.55135 * 109.57316 * 263.54708 * 21 12 11 24 24 N 1.48785 * 106.18383 * 290.98955 * 23 21 12 25 25 C 1.36934 * 123.52166 * 213.31266 * 24 23 21 26 26 H 1.07995 * 120.00147 * 162.22674 * 25 24 23 27 27 C 1.38819 * 120.00158 * 342.22895 * 25 24 23 28 28 N 1.31623 * 119.99741 * 349.46208 * 27 25 24 29 29 Si 1.86791 * 120.00142 * 169.46004 * 27 25 24 30 30 H 1.48500 * 109.47167 * 59.99849 * 29 27 25 31 31 H 1.48499 * 109.47296 * 179.97438 * 29 27 25 32 32 H 1.48507 * 109.47149 * 299.99919 * 29 27 25 33 33 H 1.08988 * 109.47335 * 295.23129 * 1 2 3 34 34 H 1.09002 * 109.46986 * 55.23466 * 1 2 3 35 35 H 1.08998 * 109.46695 * 175.22821 * 1 2 3 36 36 H 1.09006 * 109.47364 * 240.00449 * 2 1 3 37 37 H 1.09003 * 109.47103 * 119.99815 * 2 1 3 38 38 H 1.07997 * 126.81177 * 180.28119 * 6 5 4 39 39 H 1.09003 * 110.39404 * 293.75020 * 11 10 8 40 40 H 1.09001 * 110.39365 * 56.03031 * 11 10 8 41 41 H 1.08997 * 110.74882 * 37.06535 * 16 10 8 42 42 H 1.09005 * 110.75206 * 273.71522 * 16 10 8 43 43 H 1.09000 * 109.57277 * 45.07639 * 19 17 14 44 44 H 1.08997 * 109.57384 * 165.46812 * 19 17 14 45 45 H 1.08997 * 110.41181 * 276.81855 * 20 19 17 46 46 H 1.09000 * 109.68053 * 155.24764 * 20 19 17 47 47 H 1.09004 * 110.10533 * 50.15311 * 23 21 12 48 48 H 1.08999 * 110.10267 * 171.70745 * 23 21 12 49 49 H 0.96992 * 119.99913 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3263 2.0755 -1.0391 5 7 2.7215 3.2500 -0.6985 6 6 2.6765 3.3655 0.6290 7 6 2.2284 2.1621 1.1064 8 6 2.0117 1.7880 2.5138 9 8 1.7239 0.6417 2.8010 10 7 2.1321 2.7158 3.4840 11 6 1.9277 2.4872 4.9462 12 6 2.3251 3.7791 5.5745 13 1 3.4144 3.8161 5.5643 14 6 1.8939 4.8229 4.4993 15 1 0.8073 4.8277 4.4132 16 6 2.4946 4.1540 3.2838 17 6 2.3630 6.1486 5.0508 18 1 2.5211 6.9062 4.2833 19 6 3.6022 5.9120 5.9440 20 6 3.1018 5.2719 7.2853 21 6 1.9201 4.3219 6.9057 22 1 1.7418 3.5416 7.6455 23 6 0.7253 5.2954 6.7283 24 7 1.2640 6.4883 6.0207 25 6 0.8075 7.7621 6.2305 26 1 1.4045 8.6074 5.9216 27 6 -0.4226 7.9670 6.8403 28 7 -1.2407 6.9533 7.0288 29 14 -0.9168 9.6814 7.3934 30 1 -0.9417 10.5920 6.2207 31 1 -2.2667 9.6326 8.0103 32 1 0.0649 10.1826 8.3886 33 1 -0.3633 0.4380 0.9295 34 1 -0.3633 0.5860 -0.8442 35 1 -0.3632 -1.0241 -0.0855 36 1 1.8934 -0.5138 -0.8901 37 1 1.8934 -0.5138 0.8900 38 1 2.9430 4.2344 1.2124 39 1 0.8840 2.2483 5.1510 40 1 2.5764 1.6857 5.2997 41 1 2.0464 4.5414 2.3689 42 1 3.5771 4.2810 3.2685 43 1 4.2899 5.2318 5.4416 44 1 4.1004 6.8621 6.1364 45 1 2.7547 6.0460 7.9697 46 1 3.9093 4.7005 7.7430 47 1 -0.0552 4.8256 6.1299 48 1 0.3285 5.5828 7.7020 49 1 -2.1003 7.0965 7.4545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087357417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:41 Heat of formation + Delta-G solvation = 129.432186 kcal Electronic energy + Delta-G solvation = -31934.910583 eV Core-core repulsion = 27901.280634 eV Total energy + Delta-G solvation = -4033.629950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.45159 -42.52351 -40.23486 -37.60873 -36.38751 -34.99247 -33.23741 -32.53599 -31.87357 -31.51706 -31.01154 -29.20924 -27.41476 -26.19937 -25.26964 -24.13288 -23.51790 -23.23450 -22.29667 -21.84276 -20.79832 -19.12528 -18.61173 -18.35155 -17.99361 -17.54239 -17.24705 -16.91765 -16.43127 -16.14502 -16.03740 -15.87627 -15.52914 -15.01563 -14.62863 -14.49268 -14.11589 -14.02315 -13.84824 -13.70502 -13.36554 -13.23357 -13.07346 -12.89628 -12.71221 -12.66567 -12.56875 -12.34024 -12.32241 -12.15767 -12.08219 -12.05779 -12.04148 -11.78061 -11.38301 -11.24559 -11.22337 -10.68136 -10.65157 -10.57150 -10.40210 -9.85146 -8.67121 -7.78156 -5.14087 -0.20705 0.92635 1.16382 1.48788 1.49765 1.55747 1.73528 1.91130 2.53183 2.96727 3.29177 3.32093 3.36757 3.50679 3.63013 3.66223 3.82339 3.85180 4.04587 4.18574 4.21256 4.22504 4.29549 4.31400 4.39922 4.49708 4.52869 4.59148 4.61374 4.71152 4.77556 4.80589 4.81705 4.91407 4.94021 4.98983 5.04641 5.07200 5.09931 5.29172 5.33268 5.35797 5.47499 5.57336 5.60075 5.71971 5.75810 5.89075 6.19951 6.32818 6.75329 7.16936 7.20301 7.85198 8.48736 9.29607 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015964 B = 0.003009 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.482245 B = 9302.738578 C = 9641.158611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.249 5.249 4 N -0.073 5.073 5 N -0.299 5.299 6 C -0.003 4.003 7 C -0.075 4.075 8 C 0.610 3.390 9 O -0.563 6.563 10 N -0.602 5.602 11 C 0.142 3.858 12 C -0.111 4.111 13 H 0.099 0.901 14 C -0.116 4.116 15 H 0.051 0.949 16 C 0.105 3.895 17 C 0.170 3.830 18 H 0.082 0.918 19 C -0.120 4.120 20 C -0.091 4.091 21 C -0.091 4.091 22 H 0.091 0.909 23 C 0.199 3.801 24 N -0.615 5.615 25 C -0.233 4.233 26 H 0.075 0.925 27 C -0.062 4.062 28 N -0.946 5.946 29 Si 0.962 3.038 30 H -0.279 1.279 31 H -0.302 1.302 32 H -0.280 1.280 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.233 0.767 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.117 0.883 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.074 0.926 47 H -0.012 1.012 48 H 0.034 0.966 49 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.984 -12.988 -8.894 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.048 5.048 4 N -0.054 5.054 5 N -0.161 5.161 6 C -0.164 4.164 7 C -0.209 4.209 8 C 0.397 3.603 9 O -0.443 6.443 10 N -0.335 5.335 11 C 0.021 3.979 12 C -0.129 4.129 13 H 0.117 0.883 14 C -0.136 4.136 15 H 0.069 0.931 16 C -0.016 4.016 17 C 0.065 3.935 18 H 0.100 0.900 19 C -0.159 4.159 20 C -0.129 4.129 21 C -0.111 4.111 22 H 0.110 0.890 23 C 0.074 3.926 24 N -0.340 5.340 25 C -0.363 4.363 26 H 0.093 0.907 27 C -0.255 4.255 28 N -0.595 5.595 29 Si 0.792 3.208 30 H -0.205 1.205 31 H -0.229 1.229 32 H -0.207 1.207 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.133 0.867 36 H 0.152 0.848 37 H 0.136 0.864 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.074 0.926 45 H 0.056 0.944 46 H 0.092 0.908 47 H 0.006 0.994 48 H 0.052 0.948 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 10.757 -13.603 -10.283 20.161 hybrid contribution -1.444 1.079 1.661 2.451 sum 9.313 -12.523 -8.622 17.830 Atomic orbital electron populations 1.22077 0.92162 1.05470 1.02034 1.22689 0.97138 0.74502 1.07743 1.48183 1.39363 1.14261 1.02965 1.78181 1.15007 1.00009 1.12174 1.74910 1.17706 1.09804 1.13672 1.25037 1.01357 0.98462 0.91504 1.21874 1.13942 0.94414 0.90699 1.16264 0.77524 0.84163 0.82352 1.90769 1.50813 1.19498 1.83229 1.49394 1.66995 1.10261 1.06826 1.20977 1.01404 0.97968 0.77559 1.21102 1.03517 0.92999 0.95310 0.88345 1.22207 1.00270 0.96302 0.94835 0.93072 1.22412 1.02213 0.78235 0.98713 1.21315 0.88616 0.92802 0.90731 0.90005 1.23002 0.96861 1.00303 0.95742 1.22647 0.95984 0.97186 0.97052 1.21784 0.97139 0.96479 0.95670 0.89049 1.21142 0.91150 0.85531 0.94791 1.45923 1.41343 1.02698 1.44061 1.19440 0.98915 0.84756 1.33190 0.90737 1.25563 0.96172 1.00010 1.03777 1.70140 1.09241 1.30865 1.49243 0.85400 0.76422 0.80805 0.78190 1.20523 1.22865 1.20678 0.93661 0.91978 0.86734 0.84777 0.86361 0.75152 0.92550 0.89007 0.88539 0.86507 0.89300 0.92556 0.94375 0.90781 0.99355 0.94765 0.94796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 71.98 0.74 -1.76 16 2 C 0.10 1.63 6.60 86.38 0.57 2.20 16 3 N -0.25 -5.81 3.39 -335.41 -1.14 -6.95 16 4 N -0.07 -1.93 13.14 37.02 0.49 -1.44 16 5 N -0.30 -8.08 12.35 -57.50 -0.71 -8.79 16 6 C 0.00 -0.08 10.43 84.18 0.88 0.80 16 7 C -0.08 -1.83 6.94 40.40 0.28 -1.55 16 8 C 0.61 15.92 7.86 86.61 0.68 16.60 16 9 O -0.56 -16.78 15.27 -4.09 -0.06 -16.84 16 10 N -0.60 -14.45 3.43 -820.53 -2.82 -17.26 16 11 C 0.14 3.50 6.87 84.56 0.58 4.08 16 12 C -0.11 -2.83 2.16 -12.20 -0.03 -2.85 16 13 H 0.10 2.07 5.07 -2.39 -0.01 2.06 16 14 C -0.12 -3.33 2.28 -11.01 -0.03 -3.35 16 15 H 0.05 1.97 6.54 -2.39 -0.02 1.96 16 16 C 0.11 2.17 5.01 85.17 0.43 2.60 16 17 C 0.17 5.56 4.35 44.12 0.19 5.75 16 18 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 19 C -0.12 -3.19 5.77 32.46 0.19 -3.00 16 20 C -0.09 -2.68 5.60 33.08 0.19 -2.49 16 21 C -0.09 -2.85 4.24 -10.07 -0.04 -2.90 16 22 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 23 C 0.20 8.87 3.95 86.67 0.34 9.21 16 24 N -0.62 -27.65 2.25 -658.84 -1.48 -29.14 16 25 C -0.23 -12.05 10.09 84.04 0.85 -11.20 16 26 H 0.07 3.71 7.85 -2.91 -0.02 3.69 16 27 C -0.06 -3.36 5.27 84.86 0.45 -2.91 16 28 N -0.95 -55.19 10.76 21.65 0.23 -54.96 16 29 Si 0.96 44.57 29.57 68.60 2.03 46.60 16 30 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 31 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 32 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 33 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.13 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.12 2.08 6.51 -2.39 -0.02 2.06 16 38 H 0.23 3.81 4.82 -2.91 -0.01 3.80 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.10 1.87 5.35 -2.39 -0.01 1.86 16 42 H 0.12 1.65 8.11 -2.38 -0.02 1.63 16 43 H 0.09 1.71 6.61 -2.39 -0.02 1.69 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.40 7.71 -2.39 -0.02 1.38 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H -0.01 -0.59 7.09 -2.39 -0.02 -0.60 16 48 H 0.03 1.80 6.73 -2.39 -0.02 1.78 16 49 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -69.72 371.27 3.77 -65.95 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.98 Total: 13.62 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 6.26 Total: 9.21 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -5.43 Total: -118.54 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.06 Total: -16.84 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -69.72 3.77 -65.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087357417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.381 kcal (2) G-P(sol) polarization free energy of solvation -69.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds