Wall clock time and date at job start Wed Apr 1 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47101 * 2 1 4 4 C 1.34816 * 126.59002 * 125.27165 * 3 2 1 5 5 C 1.36599 * 106.83674 * 180.15048 * 4 3 2 6 6 C 1.47521 * 125.77129 * 179.89253 * 5 4 3 7 7 O 1.21595 * 119.99908 * 359.72519 * 6 5 4 8 8 N 1.34778 * 119.99961 * 179.71454 * 6 5 4 9 9 C 1.48167 * 127.83576 * 359.97438 * 8 6 5 10 10 C 1.54369 * 104.56128 * 140.39958 * 9 8 6 11 11 H 1.09008 * 111.45795 * 263.88362 * 10 9 8 12 12 C 1.54166 * 105.01195 * 24.07473 * 10 9 8 13 13 H 1.08998 * 110.87234 * 239.35372 * 12 10 9 14 14 C 1.48142 * 127.83569 * 180.02562 * 8 6 5 15 15 C 1.53030 * 109.71981 * 116.63286 * 12 10 9 16 16 H 1.09000 * 110.13019 * 180.08442 * 15 12 10 17 17 C 1.53044 * 109.19470 * 300.52123 * 15 12 10 18 18 C 1.52928 * 110.00563 * 59.21898 * 17 15 12 19 19 C 1.53230 * 108.97241 * 141.20180 * 10 9 8 20 20 H 1.08994 * 110.93913 * 67.62442 * 19 10 9 21 21 N 1.47688 * 108.05407 * 188.90425 * 19 10 9 22 22 C 1.36931 * 122.07351 * 238.60092 * 21 19 10 23 23 H 1.08002 * 120.00438 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.71930 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 C 1.47640 * 115.84703 * 58.86610 * 21 19 10 31 31 N 1.34409 * 108.45837 * 359.63553 * 5 4 3 32 32 N 1.28763 * 109.52116 * 0.22426 * 31 5 4 33 33 H 1.09004 * 109.47020 * 60.00227 * 1 2 3 34 34 H 1.09005 * 109.46887 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47307 * 299.99610 * 1 2 3 36 36 H 1.09001 * 109.47461 * 239.99954 * 2 1 3 37 37 H 1.08997 * 109.46816 * 120.00137 * 2 1 3 38 38 H 1.08001 * 126.58445 * 0.02562 * 4 3 2 39 39 H 1.08995 * 110.41729 * 21.62783 * 9 8 6 40 40 H 1.09002 * 110.41262 * 259.16993 * 9 8 6 41 41 H 1.08996 * 110.40490 * 100.64600 * 14 8 6 42 42 H 1.09004 * 110.40181 * 338.22076 * 14 8 6 43 43 H 1.08995 * 109.38120 * 299.05079 * 17 15 12 44 44 H 1.09009 * 109.37864 * 179.38301 * 17 15 12 45 45 H 1.09000 * 109.45096 * 240.84869 * 18 17 15 46 46 H 1.09002 * 109.42919 * 120.91631 * 18 17 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 48 48 H 1.08999 * 109.99389 * 119.46300 * 30 21 19 49 49 H 1.09005 * 109.99627 * 240.84148 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9305 0.8838 5 6 3.0501 3.2324 0.5088 6 6 3.9074 4.2192 1.1926 7 8 4.5318 3.8978 2.1852 8 7 3.9986 5.4770 0.7170 9 6 3.3210 6.0516 -0.4688 10 6 2.9155 7.4756 -0.0319 11 1 1.8833 7.5069 0.3171 12 6 3.8924 7.8381 1.1043 13 1 3.3527 8.0542 2.0263 14 6 4.7999 6.5981 1.2606 15 6 4.7519 9.0327 0.6848 16 1 5.4465 9.2938 1.4832 17 6 5.5345 8.6702 -0.5795 18 6 4.5676 8.3012 -1.7055 19 6 3.1236 8.4356 -1.2079 20 1 2.4211 8.2228 -2.0136 21 7 2.9391 9.8143 -0.7115 22 6 1.9936 10.6552 -1.2348 23 1 1.3541 10.3165 -2.0366 24 6 1.8535 11.9412 -0.7312 25 7 2.6330 12.3540 0.2455 26 14 0.5584 13.0857 -1.4399 27 1 -0.7123 12.9205 -0.6894 28 1 1.0229 14.4914 -1.3234 29 1 0.3350 12.7551 -2.8704 30 6 3.8416 10.2315 0.3800 31 7 2.3130 3.4608 -0.5917 32 7 1.6878 2.3846 -0.9218 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5137 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.8932 -0.5138 0.8900 38 1 3.3344 1.4367 1.7275 39 1 2.4377 5.4658 -0.7230 40 1 4.0067 6.0942 -1.3150 41 1 5.7171 6.7236 0.6853 42 1 5.0301 6.4259 2.3120 43 1 6.1869 7.8225 -0.3705 44 1 6.1396 9.5231 -0.8873 45 1 4.7497 7.2729 -2.0178 46 1 4.7239 8.9704 -2.5515 47 1 2.5353 13.2527 0.5972 48 1 4.4400 11.0856 0.0629 49 1 3.2609 10.4902 1.2655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087400341.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:59 Heat of formation + Delta-G solvation = 113.226123 kcal Electronic energy + Delta-G solvation = -31452.518391 eV Core-core repulsion = 27418.185694 eV Total energy + Delta-G solvation = -4034.332697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38628 -40.63716 -38.65334 -35.82160 -35.60621 -33.17113 -31.68633 -31.59737 -30.89489 -29.88252 -29.74061 -27.37361 -25.39338 -25.00185 -24.45158 -22.55693 -22.00380 -21.92211 -20.88561 -20.62262 -19.62128 -17.82159 -17.16284 -16.54729 -16.42466 -16.24275 -15.85801 -15.33237 -15.04116 -14.89554 -14.68290 -14.56087 -14.12770 -13.77711 -13.53204 -13.27012 -12.85714 -12.71868 -12.51830 -12.35435 -12.22296 -12.11020 -12.06179 -11.81597 -11.45775 -11.38646 -11.14102 -11.00761 -10.83694 -10.64152 -10.52666 -10.46833 -10.33587 -10.10193 -10.03806 -9.69117 -9.56987 -9.46576 -9.22055 -9.12874 -8.43390 -8.40587 -6.77932 -5.59929 -2.96206 0.93972 1.63114 1.76148 3.04949 3.31332 3.44170 3.49710 3.51042 3.91925 4.04896 4.30513 4.46022 4.54243 4.56307 4.73813 4.95749 4.99742 5.05771 5.11934 5.21917 5.26904 5.42232 5.47172 5.52868 5.59135 5.61988 5.64723 5.79073 5.85137 5.89263 5.97916 6.10377 6.17549 6.20054 6.26990 6.31322 6.34218 6.49910 6.57444 6.63136 6.77129 6.84603 6.96904 7.04732 7.10867 7.67462 7.70601 7.76827 7.79111 7.97386 8.22130 8.38807 9.32629 9.93751 10.48140 11.45449 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.002857 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.761806 B = 9798.728967 C =10890.145867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.363 5.363 4 C 0.089 3.911 5 C -0.092 4.092 6 C 0.619 3.381 7 O -0.552 6.552 8 N -0.602 5.602 9 C 0.089 3.911 10 C -0.105 4.105 11 H 0.078 0.922 12 C -0.079 4.079 13 H 0.076 0.924 14 C 0.103 3.897 15 C -0.110 4.110 16 H 0.065 0.935 17 C -0.105 4.105 18 C -0.135 4.135 19 C 0.181 3.819 20 H 0.068 0.932 21 N -0.600 5.600 22 C -0.231 4.231 23 H 0.075 0.925 24 C -0.010 4.010 25 N -0.924 5.924 26 Si 0.908 3.092 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 C 0.203 3.797 31 N -0.198 5.198 32 N -0.065 5.065 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.203 0.797 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.250 0.750 48 H 0.051 0.949 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -24.440 0.776 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.149 5.149 4 C -0.068 4.068 5 C -0.231 4.231 6 C 0.405 3.595 7 O -0.430 6.430 8 N -0.332 5.332 9 C -0.033 4.033 10 C -0.127 4.127 11 H 0.097 0.903 12 C -0.098 4.098 13 H 0.095 0.905 14 C -0.018 4.018 15 C -0.130 4.130 16 H 0.084 0.916 17 C -0.143 4.143 18 C -0.174 4.174 19 C 0.073 3.927 20 H 0.087 0.913 21 N -0.323 5.323 22 C -0.360 4.360 23 H 0.092 0.908 24 C -0.205 4.205 25 N -0.572 5.572 26 Si 0.739 3.261 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 C 0.079 3.921 31 N -0.072 5.072 32 N -0.045 5.045 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.220 0.780 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.069 0.931 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.029 -24.200 0.138 24.222 hybrid contribution -0.205 0.290 0.583 0.683 sum 0.824 -23.910 0.721 23.935 Atomic orbital electron populations 1.22091 0.92688 1.03655 1.04197 1.22024 0.96931 0.76260 1.05022 1.50619 1.31584 1.12362 1.20287 1.23336 0.93323 0.94045 0.96069 1.21438 1.07650 0.94787 0.99197 1.16290 0.80394 0.80022 0.82744 1.90785 1.47437 1.78709 1.26118 1.48758 1.46020 1.08894 1.29538 1.23165 0.98576 0.94306 0.87288 1.22684 0.99266 0.93152 0.97559 0.90331 1.21940 0.95763 0.93412 0.98711 0.90550 1.22773 0.94746 0.84539 0.99765 1.21803 0.97706 0.96846 0.96606 0.91647 1.21484 0.97309 0.99806 0.95684 1.22182 0.97488 0.99469 0.98229 1.20500 0.93858 0.85400 0.92988 0.91341 1.44618 1.39458 1.08085 1.40165 1.19287 1.09756 0.93112 1.13860 0.90754 1.24774 0.99500 0.97510 0.98732 1.70026 1.40478 1.17848 1.28860 0.86179 0.81175 0.80403 0.78369 1.21801 1.21862 1.20815 1.21104 0.89789 0.90174 0.91038 1.74694 1.04760 1.17491 1.10247 1.82002 1.20505 0.90340 1.11685 0.90605 0.89917 0.91646 0.88371 0.87760 0.77985 0.88202 0.90179 0.90091 0.90602 0.93262 0.92543 0.92864 0.92210 0.93960 0.93074 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.70 10.12 37.16 0.38 -0.33 16 2 C 0.12 0.49 7.26 -4.04 -0.03 0.46 16 3 N -0.36 -3.22 3.69 -61.06 -0.23 -3.45 16 4 C 0.09 0.87 11.27 -16.83 -0.19 0.68 16 5 C -0.09 -1.24 6.87 -83.55 -0.57 -1.81 16 6 C 0.62 9.75 7.91 -12.48 -0.10 9.65 16 7 O -0.55 -9.67 17.13 5.28 0.09 -9.58 16 8 N -0.60 -9.44 3.32 -170.50 -0.57 -10.01 16 9 C 0.09 1.38 5.96 -2.41 -0.01 1.36 16 10 C -0.11 -1.86 3.33 -89.17 -0.30 -2.16 16 11 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 12 C -0.08 -1.36 3.15 -89.24 -0.28 -1.64 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.10 1.59 6.35 -2.38 -0.02 1.58 16 15 C -0.11 -2.02 2.87 -90.28 -0.26 -2.28 16 16 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 17 C -0.11 -1.77 5.30 -26.75 -0.14 -1.91 16 18 C -0.13 -2.32 5.53 -26.60 -0.15 -2.47 16 19 C 0.18 3.56 3.19 -66.99 -0.21 3.34 16 20 H 0.07 1.35 7.99 -51.93 -0.42 0.93 16 21 N -0.60 -14.55 2.88 -163.17 -0.47 -15.01 16 22 C -0.23 -6.26 9.99 -15.06 -0.15 -6.41 16 23 H 0.07 1.96 7.79 -52.49 -0.41 1.55 16 24 C -0.01 -0.27 5.47 -17.43 -0.10 -0.36 16 25 N -0.92 -26.70 9.77 55.49 0.54 -26.16 16 26 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 29 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 30 C 0.20 4.80 4.37 -3.11 -0.01 4.79 16 31 N -0.20 -2.83 9.36 32.85 0.31 -2.52 16 32 N -0.07 -0.82 13.65 60.35 0.82 0.01 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.10 0.14 8.08 -51.93 -0.42 -0.28 16 38 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.10 1.56 5.45 -51.93 -0.28 1.28 16 40 H 0.08 1.19 5.21 -51.93 -0.27 0.92 16 41 H 0.08 1.19 5.30 -51.93 -0.28 0.91 16 42 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 43 H 0.05 0.72 5.79 -51.93 -0.30 0.42 16 44 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 45 H 0.05 0.80 5.67 -51.93 -0.29 0.51 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.05 1.36 7.23 -51.93 -0.38 0.98 16 49 H 0.05 1.30 7.23 -51.93 -0.38 0.92 16 LS Contribution 372.87 15.07 5.62 5.62 Total: -1.00 -33.10 372.87 -8.24 -41.33 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -7.19 Total: 0.20 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -2.14 Total: 2.48 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.41 Total: -57.14 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.10 -8.24 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087400341.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.560 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds