Wall clock time and date at job start Wed Apr 1 2020 04:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.47101 * 2 1 4 4 C 1.34816 * 126.59002 * 125.27165 * 3 2 1 5 5 C 1.36599 * 106.83674 * 180.15048 * 4 3 2 6 6 C 1.47521 * 125.77129 * 179.89253 * 5 4 3 7 7 O 1.21595 * 119.99908 * 359.72519 * 6 5 4 8 8 N 1.34778 * 119.99961 * 179.71454 * 6 5 4 9 9 C 1.48167 * 127.83576 * 359.97438 * 8 6 5 10 10 C 1.54369 * 104.56128 * 140.39958 * 9 8 6 11 11 H 1.09008 * 111.45795 * 263.88362 * 10 9 8 12 12 C 1.54166 * 105.01195 * 24.07473 * 10 9 8 13 13 H 1.08998 * 110.87234 * 239.35372 * 12 10 9 14 14 C 1.48142 * 127.83569 * 180.02562 * 8 6 5 15 15 C 1.53030 * 109.71981 * 116.63286 * 12 10 9 16 16 H 1.09000 * 110.13019 * 180.08442 * 15 12 10 17 17 C 1.53044 * 109.19470 * 300.52123 * 15 12 10 18 18 C 1.52928 * 110.00563 * 59.21898 * 17 15 12 19 19 C 1.53230 * 108.97241 * 141.20180 * 10 9 8 20 20 H 1.08994 * 110.93913 * 67.62442 * 19 10 9 21 21 N 1.47688 * 108.05407 * 188.90425 * 19 10 9 22 22 C 1.36931 * 122.07351 * 238.60092 * 21 19 10 23 23 H 1.08002 * 120.00438 * 359.97438 * 22 21 19 24 24 C 1.38817 * 119.99680 * 179.71930 * 22 21 19 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 C 1.47640 * 115.84703 * 58.86610 * 21 19 10 31 31 N 1.34409 * 108.45837 * 359.63553 * 5 4 3 32 32 N 1.28763 * 109.52116 * 0.22426 * 31 5 4 33 33 H 1.09004 * 109.47020 * 60.00227 * 1 2 3 34 34 H 1.09005 * 109.46887 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47307 * 299.99610 * 1 2 3 36 36 H 1.09001 * 109.47461 * 239.99954 * 2 1 3 37 37 H 1.08997 * 109.46816 * 120.00137 * 2 1 3 38 38 H 1.08001 * 126.58445 * 0.02562 * 4 3 2 39 39 H 1.08995 * 110.41729 * 21.62783 * 9 8 6 40 40 H 1.09002 * 110.41262 * 259.16993 * 9 8 6 41 41 H 1.08996 * 110.40490 * 100.64600 * 14 8 6 42 42 H 1.09004 * 110.40181 * 338.22076 * 14 8 6 43 43 H 1.08995 * 109.38120 * 299.05079 * 17 15 12 44 44 H 1.09009 * 109.37864 * 179.38301 * 17 15 12 45 45 H 1.09000 * 109.45096 * 240.84869 * 18 17 15 46 46 H 1.09002 * 109.42919 * 120.91631 * 18 17 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 48 48 H 1.08999 * 109.99389 * 119.46300 * 30 21 19 49 49 H 1.09005 * 109.99627 * 240.84148 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9305 0.8838 5 6 3.0501 3.2324 0.5088 6 6 3.9074 4.2192 1.1926 7 8 4.5318 3.8978 2.1852 8 7 3.9986 5.4770 0.7170 9 6 3.3210 6.0516 -0.4688 10 6 2.9155 7.4756 -0.0319 11 1 1.8833 7.5069 0.3171 12 6 3.8924 7.8381 1.1043 13 1 3.3527 8.0542 2.0263 14 6 4.7999 6.5981 1.2606 15 6 4.7519 9.0327 0.6848 16 1 5.4465 9.2938 1.4832 17 6 5.5345 8.6702 -0.5795 18 6 4.5676 8.3012 -1.7055 19 6 3.1236 8.4356 -1.2079 20 1 2.4211 8.2228 -2.0136 21 7 2.9391 9.8143 -0.7115 22 6 1.9936 10.6552 -1.2348 23 1 1.3541 10.3165 -2.0366 24 6 1.8535 11.9412 -0.7312 25 7 2.6330 12.3540 0.2455 26 14 0.5584 13.0857 -1.4399 27 1 -0.7123 12.9205 -0.6894 28 1 1.0229 14.4914 -1.3234 29 1 0.3350 12.7551 -2.8704 30 6 3.8416 10.2315 0.3800 31 7 2.3130 3.4608 -0.5917 32 7 1.6878 2.3846 -0.9218 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 -0.3634 0.5137 0.8900 36 1 1.8934 -0.5138 -0.8900 37 1 1.8932 -0.5138 0.8900 38 1 3.3344 1.4367 1.7275 39 1 2.4377 5.4658 -0.7230 40 1 4.0067 6.0942 -1.3150 41 1 5.7171 6.7236 0.6853 42 1 5.0301 6.4259 2.3120 43 1 6.1869 7.8225 -0.3705 44 1 6.1396 9.5231 -0.8873 45 1 4.7497 7.2729 -2.0178 46 1 4.7239 8.9704 -2.5515 47 1 2.5353 13.2527 0.5972 48 1 4.4400 11.0856 0.0629 49 1 3.2609 10.4902 1.2655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087400341.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:25:59 Heat of formation + Delta-G solvation = 92.049509 kcal Electronic energy + Delta-G solvation = -31453.436678 eV Core-core repulsion = 27418.185694 eV Total energy + Delta-G solvation = -4035.250984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.23434 -42.07105 -39.92910 -37.18836 -36.33523 -34.97560 -33.25738 -32.35308 -31.93263 -31.66280 -30.92116 -28.85238 -27.04227 -25.95567 -25.51042 -23.69652 -23.61947 -22.72644 -22.36238 -22.13502 -20.66143 -19.22859 -18.56080 -17.86297 -17.40160 -17.30639 -17.05941 -16.69773 -16.56888 -16.27259 -15.76263 -15.62216 -15.47387 -15.10396 -14.73127 -14.21818 -14.13912 -13.84136 -13.73782 -13.67145 -13.49852 -13.29853 -13.05888 -12.94313 -12.87098 -12.81973 -12.67363 -12.52857 -12.27177 -12.18100 -12.07773 -11.89361 -11.75725 -11.68766 -11.30331 -11.16027 -11.13555 -10.78595 -10.68504 -10.46485 -10.36478 -9.65316 -8.79051 -7.71490 -5.09106 0.17476 0.61866 1.14976 1.47156 1.48017 1.56450 1.90871 2.21463 2.53766 3.11632 3.37561 3.40357 3.55625 3.64334 3.77155 3.87542 3.88848 3.97633 4.01410 4.18056 4.27259 4.28009 4.30674 4.34371 4.37325 4.48200 4.50343 4.62250 4.69554 4.74223 4.76290 4.81499 4.91985 4.94504 4.99159 5.04670 5.16956 5.20904 5.26309 5.30140 5.42093 5.48553 5.52210 5.56206 5.57540 5.66673 5.82651 5.94684 6.32740 6.48726 6.82514 7.09735 7.22557 7.93702 8.44050 9.31386 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015926 B = 0.002857 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.761806 B = 9798.728967 C =10890.145867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.107 3.893 3 N -0.348 5.348 4 C 0.112 3.888 5 C -0.124 4.124 6 C 0.620 3.380 7 O -0.573 6.573 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.100 4.100 11 H 0.054 0.946 12 C -0.075 4.075 13 H 0.059 0.941 14 C 0.114 3.886 15 C -0.100 4.100 16 H 0.081 0.919 17 C -0.101 4.101 18 C -0.127 4.127 19 C 0.174 3.826 20 H 0.065 0.935 21 N -0.616 5.616 22 C -0.238 4.238 23 H 0.078 0.922 24 C -0.068 4.068 25 N -0.951 5.951 26 Si 0.969 3.031 27 H -0.291 1.291 28 H -0.297 1.297 29 H -0.270 1.270 30 C 0.215 3.785 31 N -0.224 5.224 32 N -0.089 5.089 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.053 0.947 36 H 0.115 0.885 37 H 0.143 0.857 38 H 0.239 0.761 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.242 0.758 48 H 0.014 0.986 49 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -28.168 0.373 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.133 5.133 4 C -0.046 4.046 5 C -0.264 4.264 6 C 0.408 3.592 7 O -0.453 6.453 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.121 4.121 11 H 0.072 0.928 12 C -0.095 4.095 13 H 0.078 0.922 14 C -0.008 4.008 15 C -0.120 4.120 16 H 0.099 0.901 17 C -0.138 4.138 18 C -0.166 4.166 19 C 0.067 3.933 20 H 0.083 0.917 21 N -0.340 5.340 22 C -0.368 4.368 23 H 0.096 0.904 24 C -0.260 4.260 25 N -0.601 5.601 26 Si 0.798 3.202 27 H -0.219 1.219 28 H -0.224 1.224 29 H -0.195 1.195 30 C 0.090 3.910 31 N -0.097 5.097 32 N -0.070 5.070 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.072 0.928 36 H 0.133 0.867 37 H 0.161 0.839 38 H 0.255 0.745 39 H 0.118 0.882 40 H 0.112 0.888 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.032 0.968 49 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 1.765 -27.993 -0.309 28.050 hybrid contribution -0.536 1.301 0.729 1.584 sum 1.229 -26.692 0.420 26.724 Atomic orbital electron populations 1.22086 0.92871 1.04924 1.02532 1.22576 0.96789 0.73954 1.07795 1.50973 1.30344 1.13237 1.18792 1.23833 0.91989 0.92760 0.96057 1.21375 1.08937 0.95914 1.00158 1.16561 0.80157 0.80097 0.82399 1.90764 1.48418 1.79097 1.26979 1.48774 1.46153 1.09173 1.29558 1.22959 0.98957 0.92222 0.87455 1.22486 0.98218 0.94522 0.96905 0.92754 1.21828 0.95817 0.94129 0.97709 0.92222 1.22660 0.94510 0.83273 1.00365 1.21654 0.97144 0.94914 0.98273 0.90078 1.21470 0.97185 1.00959 0.94212 1.22090 0.95449 1.01174 0.97890 1.20745 0.95637 0.83382 0.93525 0.91663 1.44877 1.39047 1.09743 1.40321 1.19664 1.09987 0.93659 1.13506 0.90436 1.25534 1.01737 0.99168 0.99604 1.70272 1.42042 1.17572 1.30223 0.85209 0.78661 0.78082 0.78201 1.21876 1.22424 1.19507 1.20687 0.89540 0.91574 0.89184 1.74632 1.05458 1.18642 1.10971 1.81913 1.21044 0.90954 1.13043 0.92770 0.87184 0.92778 0.86659 0.83926 0.74463 0.88230 0.88824 0.88331 0.90378 0.89756 0.93144 0.89580 0.93433 0.94838 0.96750 0.97507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.97 10.12 71.98 0.73 -0.25 16 2 C 0.11 0.48 7.26 86.38 0.63 1.11 16 3 N -0.35 -5.20 3.69 -347.09 -1.28 -6.49 16 4 C 0.11 1.83 11.27 83.85 0.95 2.78 16 5 C -0.12 -3.12 6.87 40.82 0.28 -2.84 16 6 C 0.62 18.38 7.91 86.69 0.69 19.06 16 7 O -0.57 -18.87 17.13 -4.01 -0.07 -18.94 16 8 N -0.61 -17.93 3.32 -811.59 -2.69 -20.62 16 9 C 0.11 3.14 5.96 86.52 0.52 3.65 16 10 C -0.10 -3.54 3.33 -9.86 -0.03 -3.58 16 11 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 12 C -0.08 -2.58 3.15 -9.90 -0.03 -2.61 16 13 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 14 C 0.11 3.26 6.35 86.56 0.55 3.81 16 15 C -0.10 -3.67 2.87 -10.57 -0.03 -3.70 16 16 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 17 C -0.10 -3.20 5.30 30.59 0.16 -3.03 16 18 C -0.13 -4.19 5.53 30.68 0.17 -4.02 16 19 C 0.17 6.83 3.19 44.95 0.14 6.98 16 20 H 0.07 2.57 7.99 -2.39 -0.02 2.55 16 21 N -0.62 -30.86 2.88 -670.16 -1.93 -32.79 16 22 C -0.24 -13.30 9.99 84.04 0.84 -12.46 16 23 H 0.08 4.17 7.79 -2.91 -0.02 4.14 16 24 C -0.07 -3.92 5.47 84.86 0.46 -3.45 16 25 N -0.95 -57.71 9.77 21.65 0.21 -57.50 16 26 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 27 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 29 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 30 C 0.21 10.64 4.37 86.36 0.38 11.02 16 31 N -0.22 -6.11 9.36 -49.99 -0.47 -6.58 16 32 N -0.09 -2.12 13.65 37.02 0.51 -1.61 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.05 8.14 -2.38 -0.02 0.03 16 35 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.14 -0.38 8.08 -2.39 -0.02 -0.39 16 38 H 0.24 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.10 3.03 5.45 -2.39 -0.01 3.02 16 40 H 0.09 2.51 5.21 -2.39 -0.01 2.50 16 41 H 0.10 2.51 5.30 -2.39 -0.01 2.50 16 42 H 0.08 2.26 7.88 -2.38 -0.02 2.24 16 43 H 0.08 2.13 5.79 -2.39 -0.01 2.12 16 44 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 45 H 0.09 2.30 5.67 -2.39 -0.01 2.28 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.24 14.42 8.31 -92.70 -0.77 13.65 16 48 H 0.01 0.81 7.23 -2.39 -0.02 0.79 16 49 H 0.01 0.38 7.23 -2.38 -0.02 0.37 16 Total: -1.00 -76.34 372.87 3.67 -72.67 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.97 Total: 10.59 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 6.39 Total: 12.46 kcal Atomic # 7 Polarization: -119.93 SS G_CDS: -5.65 Total: -125.58 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.07 Total: -18.94 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.34 3.67 -72.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087400341.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.718 kcal (2) G-P(sol) polarization free energy of solvation -76.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds