Wall clock time and date at job start Wed Apr 1 2020 04:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46714 * 2 1 4 4 C 1.34809 * 126.59616 * 125.00485 * 3 2 1 5 5 C 1.36595 * 106.84256 * 179.97438 * 4 3 2 6 6 C 1.47522 * 125.77043 * 180.02562 * 5 4 3 7 7 O 1.21600 * 120.00069 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99770 * 180.02562 * 6 5 4 9 9 C 1.48176 * 127.83652 * 180.02562 * 8 6 5 10 10 C 1.54373 * 104.55687 * 140.33316 * 9 8 6 11 11 H 1.09001 * 110.79337 * 264.49003 * 10 9 8 12 12 C 1.54162 * 104.99856 * 24.14448 * 10 9 8 13 13 H 1.09001 * 111.00273 * 239.62630 * 12 10 9 14 14 C 1.48132 * 127.84115 * 359.68089 * 8 6 5 15 15 C 1.53266 * 109.36454 * 116.87986 * 12 10 9 16 16 H 1.08997 * 110.51944 * 182.69103 * 15 12 10 17 17 C 1.53344 * 108.63292 * 60.71346 * 15 12 10 18 18 C 1.54136 * 109.17898 * 298.63101 * 17 15 12 19 19 C 1.52968 * 109.12717 * 142.32052 * 10 9 8 20 20 H 1.09001 * 109.64508 * 65.65228 * 19 10 9 21 21 C 1.53313 * 109.24756 * 304.33130 * 19 10 9 22 22 N 1.47575 * 107.19974 * 301.24811 * 21 19 10 23 23 C 1.36936 * 122.01593 * 179.54689 * 22 21 19 24 24 H 1.08007 * 119.99864 * 180.02562 * 23 22 21 25 25 C 1.38807 * 120.00053 * 0.02562 * 23 22 21 26 26 N 1.31622 * 119.99842 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00123 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47020 * 89.99820 * 27 25 23 29 29 H 1.48500 * 109.47124 * 209.99753 * 27 25 23 30 30 H 1.48502 * 109.47146 * 329.99714 * 27 25 23 31 31 N 1.34394 * 108.45677 * 359.97438 * 5 4 3 32 32 N 1.28766 * 109.52572 * 0.02562 * 31 5 4 33 33 H 1.09006 * 109.46892 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47461 * 300.00432 * 1 2 3 35 35 H 1.09005 * 109.47165 * 60.00288 * 1 2 3 36 36 H 1.08991 * 109.47193 * 239.99535 * 2 1 3 37 37 H 1.09006 * 109.46720 * 119.99419 * 2 1 3 38 38 H 1.08010 * 126.57939 * 0.25215 * 4 3 2 39 39 H 1.08997 * 110.41450 * 259.09796 * 9 8 6 40 40 H 1.09000 * 110.41668 * 21.44028 * 9 8 6 41 41 H 1.09003 * 110.40323 * 338.24290 * 14 8 6 42 42 H 1.09008 * 110.40456 * 100.65810 * 14 8 6 43 43 H 1.08999 * 109.45118 * 59.43946 * 17 15 12 44 44 H 1.09001 * 109.44374 * 179.35797 * 17 15 12 45 45 H 1.09000 * 110.25632 * 240.79050 * 18 17 15 46 46 H 1.08994 * 108.02088 * 121.31736 * 18 17 15 47 47 H 1.08998 * 110.05926 * 181.62876 * 21 19 10 48 48 H 1.09001 * 109.55045 * 60.57881 * 21 19 10 49 49 H 0.97006 * 119.99754 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8715 1.9321 0.8865 5 6 3.0507 3.2323 0.5081 6 6 3.9082 4.2190 1.1916 7 8 4.5327 3.8976 2.1843 8 7 3.9994 5.4767 0.7159 9 6 4.8011 6.5981 1.2594 10 6 5.3622 7.3141 0.0121 11 1 6.3673 6.9605 -0.2176 12 6 4.3841 6.9593 -1.1254 13 1 4.8974 6.4385 -1.9337 14 6 3.3265 6.0497 -0.4729 15 6 3.7135 8.2391 -1.6368 16 1 2.9822 8.0044 -2.4102 17 6 4.7987 9.1795 -2.1746 18 6 5.7647 9.5450 -1.0304 19 6 5.3624 8.8238 0.2585 20 1 6.0630 9.0645 1.0582 21 6 3.9452 9.2755 0.6299 22 7 3.0610 8.9050 -0.4921 23 6 1.7163 9.1628 -0.4725 24 1 1.0994 8.8770 -1.3117 25 6 1.1461 9.7916 0.6258 26 7 1.8979 10.1394 1.6487 27 14 -0.6882 10.1440 0.6523 28 1 -1.4052 8.9907 1.2530 29 1 -0.9464 11.3628 1.4604 30 1 -1.1710 10.3588 -0.7355 31 7 2.3146 3.4602 -0.5930 32 7 1.6887 2.3842 -0.9226 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 -0.3634 0.5138 -0.8900 36 1 1.8934 -0.5139 -0.8899 37 1 1.8933 -0.5138 0.8901 38 1 3.3294 1.4387 1.7312 39 1 4.1681 7.2747 1.8336 40 1 5.6130 6.2193 1.8802 41 1 3.0313 5.2576 -1.1611 42 1 2.4582 6.6361 -0.1723 43 1 5.3392 8.6858 -2.9823 44 1 4.3347 10.0905 -2.5526 45 1 5.7575 10.6215 -0.8598 46 1 6.7670 9.2317 -1.3222 47 1 3.9242 10.3549 0.7803 48 1 3.6266 8.7663 1.5394 49 1 1.4995 10.5791 2.4161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087400342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:04 Heat of formation + Delta-G solvation = 109.301360 kcal Electronic energy + Delta-G solvation = -32006.319769 eV Core-core repulsion = 27971.816882 eV Total energy + Delta-G solvation = -4034.502888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.20174 -40.38377 -38.45157 -35.64321 -35.39419 -33.27806 -31.62727 -31.43751 -30.82886 -29.73824 -29.61294 -26.93585 -25.24143 -24.88614 -24.58154 -22.44893 -21.86021 -21.81037 -20.94368 -20.43285 -19.38916 -17.65491 -17.14752 -16.33466 -16.22554 -15.90062 -15.61767 -15.31568 -15.05011 -14.73953 -14.57997 -14.20207 -14.10945 -14.00429 -13.30769 -12.93638 -12.73046 -12.68252 -12.39033 -12.27907 -12.13156 -12.05155 -11.77476 -11.64696 -11.42433 -11.33725 -11.04181 -10.95086 -10.68313 -10.57924 -10.46390 -10.44538 -10.29533 -10.08681 -9.79239 -9.72683 -9.58980 -9.27955 -9.17247 -9.09247 -8.42694 -8.08839 -6.77703 -5.60177 -2.96689 1.11106 1.84328 1.92442 3.32032 3.44439 3.50436 3.51181 3.55412 4.05971 4.23919 4.42600 4.54769 4.64217 4.69508 4.92135 5.09390 5.11370 5.16313 5.21600 5.28471 5.39583 5.53578 5.57637 5.61546 5.71444 5.77574 5.84331 5.87943 5.93362 6.05720 6.14435 6.19257 6.24204 6.27083 6.41675 6.49462 6.51422 6.55553 6.71110 6.72332 6.81444 6.87356 6.93319 7.09936 7.14299 7.71993 7.76237 7.92127 7.98382 8.03765 8.38575 8.47471 9.32398 9.93401 10.47143 11.44564 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.003879 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.433919 B = 7217.036949 C = 8558.762153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.119 3.881 3 N -0.365 5.365 4 C 0.086 3.914 5 C -0.087 4.087 6 C 0.616 3.384 7 O -0.558 6.558 8 N -0.596 5.596 9 C 0.106 3.894 10 C -0.080 4.080 11 H 0.065 0.935 12 C -0.110 4.110 13 H 0.066 0.934 14 C 0.100 3.900 15 C 0.179 3.821 16 H 0.069 0.931 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.112 4.112 20 H 0.067 0.933 21 C 0.198 3.802 22 N -0.596 5.596 23 C -0.231 4.231 24 H 0.075 0.925 25 C -0.006 4.006 26 N -0.922 5.922 27 Si 0.904 3.096 28 H -0.291 1.291 29 H -0.293 1.293 30 H -0.282 1.282 31 N -0.195 5.195 32 N -0.068 5.068 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.203 0.797 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.122 -17.471 -3.787 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.151 5.151 4 C -0.070 4.070 5 C -0.227 4.227 6 C 0.403 3.597 7 O -0.437 6.437 8 N -0.326 5.326 9 C -0.016 4.016 10 C -0.100 4.100 11 H 0.083 0.917 12 C -0.132 4.132 13 H 0.085 0.915 14 C -0.022 4.022 15 C 0.070 3.930 16 H 0.087 0.913 17 C -0.168 4.168 18 C -0.136 4.136 19 C -0.132 4.132 20 H 0.085 0.915 21 C 0.074 3.926 22 N -0.320 5.320 23 C -0.360 4.360 24 H 0.093 0.907 25 C -0.202 4.202 26 N -0.570 5.570 27 Si 0.736 3.264 28 H -0.219 1.219 29 H -0.219 1.219 30 H -0.208 1.208 31 N -0.068 5.068 32 N -0.048 5.048 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.219 0.781 39 H 0.113 0.887 40 H 0.088 0.912 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.490 -17.334 -4.319 18.201 hybrid contribution -0.463 -0.184 0.962 1.083 sum 3.026 -17.517 -3.358 18.091 Atomic orbital electron populations 1.22093 0.92790 1.03521 1.04230 1.21989 0.96861 0.76420 1.04877 1.50597 1.31893 1.12249 1.20311 1.23307 0.93564 0.94124 0.96046 1.21474 1.07347 0.94816 0.99017 1.16257 0.80517 0.80012 0.82963 1.90765 1.47648 1.78968 1.26354 1.48700 1.45835 1.08564 1.29487 1.22722 0.95242 0.87043 0.96567 1.21892 0.97735 0.95816 0.94516 0.91690 1.22601 0.95926 0.97762 0.96864 0.91521 1.22856 0.96644 0.96680 0.86041 1.20543 0.92623 0.89414 0.90445 0.91264 1.22233 0.97589 1.00213 0.96729 1.21533 0.97299 0.99626 0.95174 1.21758 1.01267 0.93112 0.97049 0.91485 1.21159 0.82823 0.98800 0.89825 1.44551 1.04315 1.67964 1.15155 1.19254 0.83045 1.32061 1.01678 0.90713 1.24732 0.97580 1.01096 0.96750 1.70024 1.33006 1.46470 1.07506 0.86229 0.85576 0.77382 0.77245 1.21870 1.21893 1.20817 1.74726 1.04484 1.17298 1.10317 1.81989 1.20430 0.90442 1.11971 0.90025 0.91636 0.90630 0.88488 0.87859 0.78071 0.88673 0.91204 0.89142 0.88050 0.93339 0.92293 0.92466 0.94021 0.93186 0.92696 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.12 37.16 0.38 -0.58 16 2 C 0.12 0.67 7.26 -4.04 -0.03 0.64 16 3 N -0.36 -3.92 3.69 -61.06 -0.23 -4.15 16 4 C 0.09 1.02 11.27 -16.84 -0.19 0.83 16 5 C -0.09 -1.40 6.87 -83.55 -0.57 -1.98 16 6 C 0.62 11.47 7.91 -12.48 -0.10 11.37 16 7 O -0.56 -11.22 17.13 5.28 0.09 -11.13 16 8 N -0.60 -11.32 3.32 -170.77 -0.57 -11.89 16 9 C 0.11 1.98 6.36 -2.40 -0.02 1.96 16 10 C -0.08 -1.39 3.08 -89.31 -0.28 -1.66 16 11 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 12 C -0.11 -1.94 3.10 -89.35 -0.28 -2.22 16 13 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 14 C 0.10 1.90 6.04 -2.62 -0.02 1.88 16 15 C 0.18 3.44 3.04 -67.00 -0.20 3.24 16 16 H 0.07 1.34 7.99 -51.93 -0.41 0.92 16 17 C -0.13 -2.21 5.92 -25.96 -0.15 -2.36 16 18 C -0.10 -1.66 5.63 -26.10 -0.15 -1.81 16 19 C -0.11 -2.05 2.94 -90.44 -0.27 -2.32 16 20 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.20 4.53 3.95 -3.29 -0.01 4.51 16 22 N -0.60 -13.86 2.00 -163.41 -0.33 -14.19 16 23 C -0.23 -6.07 9.30 -15.06 -0.14 -6.21 16 24 H 0.07 1.92 7.79 -52.48 -0.41 1.51 16 25 C -0.01 -0.16 5.47 -17.43 -0.10 -0.25 16 26 N -0.92 -26.07 9.76 55.49 0.54 -25.53 16 27 Si 0.90 22.02 29.55 -169.99 -5.02 17.00 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 31 N -0.19 -3.26 9.36 32.84 0.31 -2.96 16 32 N -0.07 -1.00 13.65 60.35 0.82 -0.17 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.29 8.08 -51.93 -0.42 -0.13 16 38 H 0.20 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.10 2.02 5.36 -51.93 -0.28 1.74 16 40 H 0.07 1.25 7.88 -51.93 -0.41 0.84 16 41 H 0.09 1.66 5.47 -51.93 -0.28 1.37 16 42 H 0.10 2.29 6.42 -51.92 -0.33 1.96 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 1.30 7.23 -51.93 -0.38 0.93 16 48 H 0.06 1.40 4.91 -51.93 -0.25 1.15 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -32.15 375.13 -8.23 -40.38 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -7.39 Total: 1.93 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -2.12 Total: 5.06 kcal Atomic # 7 Polarization: -59.44 SS G_CDS: 0.55 Total: -58.89 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.15 -8.23 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087400342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.679 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds