Wall clock time and date at job start Wed Apr 1 2020 04:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46714 * 2 1 4 4 C 1.34809 * 126.59616 * 125.00485 * 3 2 1 5 5 C 1.36595 * 106.84256 * 179.97438 * 4 3 2 6 6 C 1.47522 * 125.77043 * 180.02562 * 5 4 3 7 7 O 1.21600 * 120.00069 * 0.02562 * 6 5 4 8 8 N 1.34772 * 119.99770 * 180.02562 * 6 5 4 9 9 C 1.48176 * 127.83652 * 180.02562 * 8 6 5 10 10 C 1.54373 * 104.55687 * 140.33316 * 9 8 6 11 11 H 1.09001 * 110.79337 * 264.49003 * 10 9 8 12 12 C 1.54162 * 104.99856 * 24.14448 * 10 9 8 13 13 H 1.09001 * 111.00273 * 239.62630 * 12 10 9 14 14 C 1.48132 * 127.84115 * 359.68089 * 8 6 5 15 15 C 1.53266 * 109.36454 * 116.87986 * 12 10 9 16 16 H 1.08997 * 110.51944 * 182.69103 * 15 12 10 17 17 C 1.53344 * 108.63292 * 60.71346 * 15 12 10 18 18 C 1.54136 * 109.17898 * 298.63101 * 17 15 12 19 19 C 1.52968 * 109.12717 * 142.32052 * 10 9 8 20 20 H 1.09001 * 109.64508 * 65.65228 * 19 10 9 21 21 C 1.53313 * 109.24756 * 304.33130 * 19 10 9 22 22 N 1.47575 * 107.19974 * 301.24811 * 21 19 10 23 23 C 1.36936 * 122.01593 * 179.54689 * 22 21 19 24 24 H 1.08007 * 119.99864 * 180.02562 * 23 22 21 25 25 C 1.38807 * 120.00053 * 0.02562 * 23 22 21 26 26 N 1.31622 * 119.99842 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00123 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47020 * 89.99820 * 27 25 23 29 29 H 1.48500 * 109.47124 * 209.99753 * 27 25 23 30 30 H 1.48502 * 109.47146 * 329.99714 * 27 25 23 31 31 N 1.34394 * 108.45677 * 359.97438 * 5 4 3 32 32 N 1.28766 * 109.52572 * 0.02562 * 31 5 4 33 33 H 1.09006 * 109.46892 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47461 * 300.00432 * 1 2 3 35 35 H 1.09005 * 109.47165 * 60.00288 * 1 2 3 36 36 H 1.08991 * 109.47193 * 239.99535 * 2 1 3 37 37 H 1.09006 * 109.46720 * 119.99419 * 2 1 3 38 38 H 1.08010 * 126.57939 * 0.25215 * 4 3 2 39 39 H 1.08997 * 110.41450 * 259.09796 * 9 8 6 40 40 H 1.09000 * 110.41668 * 21.44028 * 9 8 6 41 41 H 1.09003 * 110.40323 * 338.24290 * 14 8 6 42 42 H 1.09008 * 110.40456 * 100.65810 * 14 8 6 43 43 H 1.08999 * 109.45118 * 59.43946 * 17 15 12 44 44 H 1.09001 * 109.44374 * 179.35797 * 17 15 12 45 45 H 1.09000 * 110.25632 * 240.79050 * 18 17 15 46 46 H 1.08994 * 108.02088 * 121.31736 * 18 17 15 47 47 H 1.08998 * 110.05926 * 181.62876 * 21 19 10 48 48 H 1.09001 * 109.55045 * 60.57881 * 21 19 10 49 49 H 0.97006 * 119.99754 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8715 1.9321 0.8865 5 6 3.0507 3.2323 0.5081 6 6 3.9082 4.2190 1.1916 7 8 4.5327 3.8976 2.1843 8 7 3.9994 5.4767 0.7159 9 6 4.8011 6.5981 1.2594 10 6 5.3622 7.3141 0.0121 11 1 6.3673 6.9605 -0.2176 12 6 4.3841 6.9593 -1.1254 13 1 4.8974 6.4385 -1.9337 14 6 3.3265 6.0497 -0.4729 15 6 3.7135 8.2391 -1.6368 16 1 2.9822 8.0044 -2.4102 17 6 4.7987 9.1795 -2.1746 18 6 5.7647 9.5450 -1.0304 19 6 5.3624 8.8238 0.2585 20 1 6.0630 9.0645 1.0582 21 6 3.9452 9.2755 0.6299 22 7 3.0610 8.9050 -0.4921 23 6 1.7163 9.1628 -0.4725 24 1 1.0994 8.8770 -1.3117 25 6 1.1461 9.7916 0.6258 26 7 1.8979 10.1394 1.6487 27 14 -0.6882 10.1440 0.6523 28 1 -1.4052 8.9907 1.2530 29 1 -0.9464 11.3628 1.4604 30 1 -1.1710 10.3588 -0.7355 31 7 2.3146 3.4602 -0.5930 32 7 1.6887 2.3842 -0.9226 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 -0.3634 0.5138 -0.8900 36 1 1.8934 -0.5139 -0.8899 37 1 1.8933 -0.5138 0.8901 38 1 3.3294 1.4387 1.7312 39 1 4.1681 7.2747 1.8336 40 1 5.6130 6.2193 1.8802 41 1 3.0313 5.2576 -1.1611 42 1 2.4582 6.6361 -0.1723 43 1 5.3392 8.6858 -2.9823 44 1 4.3347 10.0905 -2.5526 45 1 5.7575 10.6215 -0.8598 46 1 6.7670 9.2317 -1.3222 47 1 3.9242 10.3549 0.7803 48 1 3.6266 8.7663 1.5394 49 1 1.4995 10.5791 2.4161 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087400342.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:03 Heat of formation + Delta-G solvation = 89.254366 kcal Electronic energy + Delta-G solvation = -32007.189072 eV Core-core repulsion = 27971.816882 eV Total energy + Delta-G solvation = -4035.372191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.24641 -41.89449 -39.91143 -37.02295 -36.33928 -35.13468 -33.21958 -32.37594 -31.98593 -31.53356 -30.86255 -28.45932 -27.09987 -26.07442 -25.53511 -23.76854 -23.56893 -22.73545 -22.46353 -21.86113 -20.63001 -19.25686 -18.49383 -17.61397 -17.42269 -17.27002 -16.97065 -16.84219 -16.58233 -15.93430 -15.83103 -15.69795 -15.55770 -15.12090 -14.57150 -14.42231 -13.91948 -13.87912 -13.72615 -13.56531 -13.42761 -13.23396 -13.11111 -13.03278 -12.86798 -12.76238 -12.53039 -12.41830 -12.34295 -12.20426 -12.07424 -11.82284 -11.71081 -11.65022 -11.31857 -11.24163 -11.10365 -10.72496 -10.61547 -10.44541 -10.38145 -9.61156 -8.72817 -7.67976 -5.03902 0.15227 0.60839 1.13961 1.45208 1.46446 1.53736 1.95890 2.21358 2.54670 3.12760 3.37054 3.43639 3.62442 3.67757 3.79333 3.85326 3.94202 3.97160 3.99855 4.26237 4.28644 4.34502 4.36791 4.41948 4.47130 4.55133 4.57686 4.65716 4.68392 4.73403 4.75397 4.91064 4.94375 5.01215 5.04328 5.10350 5.21522 5.28328 5.29084 5.34395 5.36710 5.45194 5.50841 5.58605 5.63445 5.72985 5.89719 6.03334 6.37479 6.54818 6.81835 7.09787 7.26829 7.98743 8.47702 9.33883 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.003879 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.433919 B = 7217.036949 C = 8558.762153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.347 5.347 4 C 0.112 3.888 5 C -0.124 4.124 6 C 0.614 3.386 7 O -0.578 6.578 8 N -0.603 5.603 9 C 0.107 3.893 10 C -0.070 4.070 11 H 0.098 0.902 12 C -0.102 4.102 13 H 0.099 0.901 14 C 0.112 3.888 15 C 0.170 3.830 16 H 0.066 0.934 17 C -0.122 4.122 18 C -0.095 4.095 19 C -0.105 4.105 20 H 0.081 0.919 21 C 0.210 3.790 22 N -0.607 5.607 23 C -0.227 4.227 24 H 0.076 0.924 25 C -0.062 4.062 26 N -0.947 5.947 27 Si 0.957 3.043 28 H -0.298 1.298 29 H -0.299 1.299 30 H -0.270 1.270 31 N -0.225 5.225 32 N -0.089 5.089 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.143 0.857 38 H 0.240 0.760 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.085 0.915 44 H 0.043 0.957 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.008 0.992 48 H 0.020 0.980 49 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 -20.537 -5.314 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.011 4.011 3 N -0.133 5.133 4 C -0.046 4.046 5 C -0.264 4.264 6 C 0.402 3.598 7 O -0.459 6.459 8 N -0.333 5.333 9 C -0.015 4.015 10 C -0.089 4.089 11 H 0.117 0.883 12 C -0.123 4.123 13 H 0.117 0.883 14 C -0.011 4.011 15 C 0.063 3.937 16 H 0.084 0.916 17 C -0.161 4.161 18 C -0.133 4.133 19 C -0.124 4.124 20 H 0.099 0.901 21 C 0.086 3.914 22 N -0.331 5.331 23 C -0.357 4.357 24 H 0.094 0.906 25 C -0.255 4.255 26 N -0.598 5.598 27 Si 0.788 3.212 28 H -0.226 1.226 29 H -0.225 1.225 30 H -0.195 1.195 31 N -0.098 5.098 32 N -0.069 5.069 33 H 0.130 0.870 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.256 0.744 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.027 0.973 48 H 0.038 0.962 49 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 5.092 -20.436 -5.912 21.874 hybrid contribution -1.055 0.580 1.448 1.883 sum 4.037 -19.856 -4.464 20.748 Atomic orbital electron populations 1.22094 0.92918 1.04971 1.02448 1.22598 0.96760 0.73846 1.07899 1.50981 1.30450 1.13218 1.18634 1.23800 0.92175 0.92619 0.96037 1.21374 1.08794 0.96031 1.00158 1.16647 0.80341 0.80154 0.82662 1.90732 1.48634 1.79403 1.27149 1.48789 1.46002 1.08939 1.29563 1.22603 0.94776 0.86818 0.97324 1.21882 0.99101 0.94568 0.93327 0.88336 1.22558 0.95504 0.96551 0.97681 0.88298 1.22589 0.95713 0.96570 0.86181 1.20812 0.93325 0.90467 0.89103 0.91576 1.22165 0.97001 0.99160 0.97749 1.21511 0.99032 0.98902 0.93865 1.21644 0.98050 0.94156 0.98583 0.90104 1.20743 0.85897 0.95855 0.88904 1.44728 1.03633 1.68106 1.16584 1.19560 0.84827 1.30203 1.01125 0.90642 1.25365 1.00733 1.02372 0.97026 1.70258 1.33857 1.47842 1.07798 0.85377 0.81990 0.76406 0.77421 1.22617 1.22544 1.19537 1.74658 1.05331 1.18662 1.11170 1.81883 1.20791 0.90974 1.13270 0.86954 0.92996 0.92809 0.86427 0.83874 0.74372 0.92267 0.90346 0.88377 0.92613 0.89624 0.93827 0.93462 0.90312 0.97339 0.96200 0.95106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.12 71.98 0.73 -0.76 16 2 C 0.11 0.81 7.26 86.38 0.63 1.44 16 3 N -0.35 -6.63 3.69 -347.09 -1.28 -7.91 16 4 C 0.11 2.38 11.27 83.85 0.95 3.33 16 5 C -0.12 -3.89 6.87 40.82 0.28 -3.61 16 6 C 0.61 22.78 7.91 86.69 0.69 23.47 16 7 O -0.58 -22.99 17.13 -4.03 -0.07 -23.06 16 8 N -0.60 -23.13 3.32 -812.44 -2.70 -25.83 16 9 C 0.11 4.03 6.36 86.52 0.55 4.58 16 10 C -0.07 -2.27 3.08 -9.95 -0.03 -2.30 16 11 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 12 C -0.10 -3.42 3.10 -9.97 -0.03 -3.45 16 13 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 14 C 0.11 4.30 6.04 86.40 0.52 4.83 16 15 C 0.17 6.42 3.04 44.98 0.14 6.56 16 16 H 0.07 2.52 7.99 -2.39 -0.02 2.50 16 17 C -0.12 -3.89 5.92 31.09 0.18 -3.71 16 18 C -0.10 -2.98 5.63 31.00 0.17 -2.80 16 19 C -0.10 -3.74 2.94 -10.68 -0.03 -3.77 16 20 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 21 C 0.21 10.08 3.95 86.28 0.34 10.42 16 22 N -0.61 -29.13 2.00 -670.90 -1.34 -30.47 16 23 C -0.23 -12.38 9.30 84.03 0.78 -11.60 16 24 H 0.08 4.00 7.79 -2.91 -0.02 3.98 16 25 C -0.06 -3.55 5.47 84.86 0.46 -3.09 16 26 N -0.95 -56.89 9.76 21.65 0.21 -56.68 16 27 Si 0.96 47.15 29.55 68.60 2.03 49.18 16 28 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 29 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 30 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 31 N -0.23 -7.52 9.36 -50.00 -0.47 -7.98 16 32 N -0.09 -2.53 13.65 37.02 0.51 -2.02 16 33 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.14 0.04 8.08 -2.38 -0.02 0.02 16 38 H 0.24 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.06 2.68 5.36 -2.39 -0.01 2.67 16 40 H 0.08 2.78 7.88 -2.39 -0.02 2.76 16 41 H 0.10 3.62 5.47 -2.39 -0.01 3.61 16 42 H 0.06 2.65 6.42 -2.38 -0.02 2.64 16 43 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.01 0.47 7.23 -2.39 -0.02 0.45 16 48 H 0.02 1.10 4.91 -2.39 -0.01 1.09 16 49 H 0.24 14.28 8.31 -92.70 -0.77 13.51 16 Total: -1.00 -76.12 375.13 4.18 -71.94 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.96 Total: 13.31 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 6.33 Total: 19.53 kcal Atomic # 7 Polarization: -125.82 SS G_CDS: -5.07 Total: -130.89 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.07 Total: -23.06 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -76.12 4.18 -71.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087400342.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.194 kcal (2) G-P(sol) polarization free energy of solvation -76.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds