Wall clock time and date at job start Wed Apr 1 2020 03:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.00138 * 2 1 4 4 C 1.54320 * 109.88543 * 238.89713 * 2 1 3 5 5 H 1.09002 * 110.87500 * 336.82588 * 4 2 1 6 6 N 1.46499 * 110.71790 * 100.02850 * 4 2 1 7 7 C 1.34780 * 119.99737 * 199.97650 * 6 4 2 8 8 O 1.21274 * 120.00105 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99507 * 179.97438 * 7 6 4 10 10 H 1.08995 * 110.46521 * 317.58552 * 9 7 6 11 11 C 1.54377 * 110.40926 * 80.00568 * 9 7 6 12 12 C 1.54259 * 105.06022 * 142.63131 * 11 9 7 13 13 C 1.54387 * 105.06271 * 359.97438 * 12 11 9 14 14 N 1.48559 * 104.58955 * 336.15098 * 13 12 11 15 15 C 1.38412 * 110.99855 * 159.04328 * 14 13 12 16 16 N 1.32491 * 119.21316 * 239.60233 * 15 14 13 17 17 C 1.32281 * 120.73830 * 179.71563 * 16 15 14 18 18 C 1.38606 * 119.19556 * 0.54840 * 17 16 15 19 19 C 1.38604 * 118.55916 * 359.72133 * 18 17 16 20 20 N 1.32277 * 119.19764 * 0.02562 * 19 18 17 21 21 C 1.55154 * 102.94846 * 218.39203 * 4 2 1 22 22 C 1.54913 * 101.57995 * 35.50103 * 21 4 2 23 23 N 1.47033 * 109.87993 * 121.09368 * 2 1 3 24 24 C 1.36933 * 125.64740 * 298.32216 * 23 2 1 25 25 H 1.07999 * 119.99870 * 0.02562 * 24 23 2 26 26 C 1.38811 * 120.00165 * 180.02562 * 24 23 2 27 27 N 1.31623 * 119.99900 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 120.00018 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47345 * 59.99951 * 28 26 24 30 30 H 1.48507 * 109.47119 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.47430 * 299.99370 * 28 26 24 32 32 H 1.09004 * 109.47438 * 181.10115 * 1 2 3 33 33 H 1.08997 * 109.47373 * 301.09826 * 1 2 3 34 34 H 1.08998 * 109.47276 * 61.09809 * 1 2 3 35 35 H 0.97001 * 120.00343 * 19.98088 * 6 4 2 36 36 H 1.08991 * 110.32683 * 23.73468 * 11 9 7 37 37 H 1.09006 * 110.32026 * 261.51789 * 11 9 7 38 38 H 1.09000 * 110.32330 * 241.10231 * 12 11 9 39 39 H 1.09003 * 110.41347 * 118.93573 * 12 11 9 40 40 H 1.08999 * 110.41133 * 94.92454 * 13 12 11 41 41 H 1.08999 * 110.41276 * 217.37423 * 13 12 11 42 42 H 1.07996 * 120.39881 * 180.29961 * 17 16 15 43 43 H 1.07997 * 120.71763 * 179.75945 * 18 17 16 44 44 H 1.07999 * 120.40242 * 180.02562 * 19 18 17 45 45 H 1.08996 * 111.00832 * 153.57164 * 21 4 2 46 46 H 1.08998 * 111.00337 * 277.42945 * 21 4 2 47 47 H 1.09008 * 110.36663 * 81.83284 * 22 21 4 48 48 H 1.09000 * 110.37041 * 204.15306 * 22 21 4 49 49 H 0.96999 * 120.00057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 1.3065 -1.4460 -1.6210 6 7 2.4555 0.1959 -2.2874 7 6 2.5560 -0.2163 -3.5667 8 8 2.3143 -1.3697 -3.8529 9 6 2.9676 0.7565 -4.6416 10 1 2.4649 1.7135 -4.5022 11 6 4.4995 0.9472 -4.6371 12 6 4.8920 1.0742 -6.1235 13 6 3.5642 0.9489 -6.9012 14 7 2.6636 0.2017 -5.9860 15 6 1.3360 0.4078 -6.3189 16 7 0.5201 0.9425 -5.4224 17 6 -0.7529 1.1579 -5.7103 18 6 -1.2317 0.8065 -6.9627 19 6 -0.3522 0.2444 -7.8746 20 7 0.9101 0.0606 -7.5245 21 6 3.2876 -1.5144 -0.6922 22 6 2.8144 -1.8794 0.7370 23 7 2.0299 -0.7141 1.1840 24 6 1.8048 -0.3556 2.4863 25 1 1.2141 0.5202 2.7109 26 6 2.3359 -1.1177 3.5178 27 7 3.0555 -2.1853 3.2440 28 14 2.0295 -0.6282 5.2942 29 1 0.5690 -0.6288 5.5630 30 1 2.6989 -1.5983 6.1976 31 1 2.5764 0.7313 5.5345 32 1 -0.3634 -1.0275 0.0197 33 1 -0.3634 0.5308 0.8799 34 1 -0.3634 0.4967 -0.8996 35 1 2.6485 1.1185 -2.0585 36 1 4.9875 0.0816 -4.1894 37 1 4.7664 1.8553 -4.0963 38 1 5.5726 0.2708 -6.4054 39 1 5.3524 2.0438 -6.3137 40 1 3.1545 1.9360 -7.1154 41 1 3.7158 0.3905 -7.8249 42 1 -1.4121 1.5985 -4.9770 43 1 -2.2675 0.9679 -7.2226 44 1 -0.6933 -0.0401 -8.8590 45 1 3.4851 -2.4112 -1.2793 46 1 4.1654 -0.8690 -0.6603 47 1 2.1885 -2.7716 0.7131 48 1 3.6715 -2.0338 1.3925 49 1 3.4263 -2.7181 3.9648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088632609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:18 Heat of formation + Delta-G solvation = 71.063909 kcal Electronic energy + Delta-G solvation = -31091.338731 eV Core-core repulsion = 27055.177743 eV Total energy + Delta-G solvation = -4036.160988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58452 -39.89204 -38.46916 -37.13095 -33.95187 -33.94017 -33.34155 -31.99816 -30.37342 -30.04485 -29.85372 -28.34628 -24.99646 -24.81128 -24.15160 -23.94721 -22.32884 -21.34445 -20.41500 -19.99333 -19.50633 -18.18842 -17.65020 -17.13549 -16.71941 -16.13090 -15.81905 -15.24591 -15.07208 -14.94180 -14.57810 -14.35327 -14.12696 -13.80690 -13.67006 -13.55314 -13.21268 -13.00396 -12.78696 -12.71561 -12.09630 -12.05505 -11.75904 -11.60426 -11.52224 -11.25087 -11.11355 -11.07800 -10.89740 -10.82581 -10.79542 -10.49491 -10.43660 -10.32929 -10.10358 -9.71780 -9.57506 -9.44840 -9.35972 -8.69202 -8.64287 -8.49485 -6.85159 -5.63246 -3.06186 0.71799 0.90317 2.75380 2.97034 3.40627 3.44446 3.46374 3.50945 3.53244 3.82080 4.22464 4.38274 4.44673 4.49487 4.56322 4.68958 4.87138 4.88297 4.90358 5.01538 5.17247 5.28316 5.36892 5.41431 5.44995 5.48805 5.57493 5.59874 5.69269 5.71392 5.81161 5.88109 5.91804 6.14564 6.17644 6.30636 6.36727 6.42190 6.49055 6.60809 6.66961 6.78181 6.91766 6.99148 7.18796 7.55568 7.64247 7.85432 7.88122 7.92469 8.37276 8.59148 9.22669 9.83658 10.48128 11.39918 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002671 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.280469 B =10481.607551 C =11428.456171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 H 0.036 0.964 4 C 0.140 3.860 5 H 0.087 0.913 6 N -0.714 5.714 7 C 0.534 3.466 8 O -0.526 6.526 9 C 0.059 3.941 10 H 0.097 0.903 11 C -0.118 4.118 12 C -0.123 4.123 13 C 0.054 3.946 14 N -0.416 5.416 15 C 0.492 3.508 16 N -0.548 5.548 17 C 0.176 3.824 18 C -0.263 4.263 19 C 0.171 3.829 20 N -0.528 5.528 21 C -0.153 4.153 22 C 0.153 3.847 23 N -0.595 5.595 24 C -0.220 4.220 25 H 0.077 0.923 26 C -0.010 4.010 27 N -0.921 5.921 28 Si 0.914 3.086 29 H -0.286 1.286 30 H -0.290 1.290 31 H -0.285 1.285 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.396 0.604 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.101 0.899 42 H 0.168 0.832 43 H 0.147 0.853 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.013 0.987 48 H 0.109 0.891 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.096 11.038 -23.055 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.036 3.964 5 H 0.105 0.895 6 N -0.365 5.365 7 C 0.318 3.682 8 O -0.401 6.401 9 C -0.052 4.052 10 H 0.115 0.885 11 C -0.157 4.157 12 C -0.161 4.161 13 C -0.072 4.072 14 N -0.135 5.135 15 C 0.136 3.864 16 N -0.267 5.267 17 C 0.009 3.991 18 C -0.286 4.286 19 C 0.004 3.996 20 N -0.245 5.245 21 C -0.192 4.192 22 C 0.028 3.972 23 N -0.320 5.320 24 C -0.348 4.348 25 H 0.095 0.905 26 C -0.206 4.206 27 N -0.569 5.569 28 Si 0.744 3.256 29 H -0.213 1.213 30 H -0.216 1.216 31 H -0.212 1.212 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.229 0.771 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.185 0.815 43 H 0.164 0.836 44 H 0.186 0.814 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.031 0.969 48 H 0.126 0.874 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.094 9.351 -22.802 24.669 hybrid contribution -1.509 1.336 0.883 2.201 sum -2.603 10.687 -21.919 24.524 Atomic orbital electron populations 1.22225 0.97980 1.01334 0.99812 1.20970 0.92516 0.94744 0.86923 0.94672 1.22069 0.97415 0.90716 0.86236 0.89452 1.45953 1.69751 1.13846 1.06920 1.19778 0.77235 0.88429 0.82762 1.90697 1.48703 1.18861 1.81837 1.22602 0.97384 0.97628 0.87622 0.88493 1.22348 0.92049 1.03769 0.97493 1.22360 0.96530 1.03153 0.94057 1.23129 0.91405 0.96289 0.96369 1.61486 0.99232 1.49334 1.03479 1.21158 0.91971 0.87673 0.85587 1.68322 1.06017 1.16700 1.35631 1.23088 0.90792 0.90577 0.94690 1.22735 1.02841 1.06348 0.96723 1.23096 0.87506 0.89714 0.99333 1.68026 1.17873 1.20052 1.18589 1.23391 0.96810 0.99371 0.99665 1.21943 0.97297 0.88328 0.89602 1.44488 1.59272 1.28235 1.00045 1.18973 1.27155 1.08149 0.80569 0.90548 1.24785 1.00409 0.97397 0.98002 1.69793 1.39093 1.17811 1.30247 0.86166 0.77619 0.77396 0.84371 1.21269 1.21605 1.21204 0.93061 0.92808 0.94330 0.77069 0.89720 0.89526 0.89908 0.90121 0.92864 0.88110 0.81451 0.83566 0.81356 0.92070 0.92022 0.96888 0.87375 0.93661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 9.14 37.15 0.34 -2.59 16 2 C 0.16 3.20 3.48 -66.95 -0.23 2.96 16 3 H 0.04 0.70 7.69 -51.93 -0.40 0.30 16 4 C 0.14 2.66 2.76 -66.10 -0.18 2.48 16 5 H 0.09 1.84 7.41 -51.93 -0.38 1.45 16 6 N -0.71 -11.08 5.20 -52.03 -0.27 -11.35 16 7 C 0.53 8.69 6.37 -10.98 -0.07 8.62 16 8 O -0.53 -10.97 16.27 5.56 0.09 -10.88 16 9 C 0.06 0.74 2.24 -67.21 -0.15 0.59 16 10 H 0.10 1.11 7.23 -51.93 -0.38 0.74 16 11 C -0.12 -1.12 6.54 -25.35 -0.17 -1.29 16 12 C -0.12 -0.95 7.00 -25.35 -0.18 -1.12 16 13 C 0.05 0.52 6.19 -2.18 -0.01 0.50 16 14 N -0.42 -5.61 4.73 -164.81 -0.78 -6.39 16 15 C 0.49 6.84 6.86 -322.80 -2.21 4.63 16 16 N -0.55 -7.24 8.10 -13.93 -0.11 -7.36 16 17 C 0.18 1.76 11.30 -17.22 -0.19 1.57 16 18 C -0.26 -2.12 10.16 -39.31 -0.40 -2.51 16 19 C 0.17 1.57 11.30 -17.22 -0.19 1.38 16 20 N -0.53 -6.73 10.14 -13.93 -0.14 -6.87 16 21 C -0.15 -3.13 6.77 -24.58 -0.17 -3.30 16 22 C 0.15 3.81 5.89 -2.53 -0.01 3.79 16 23 N -0.60 -14.98 3.13 -162.57 -0.51 -15.49 16 24 C -0.22 -6.01 9.89 -15.06 -0.15 -6.16 16 25 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 26 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 27 N -0.92 -26.84 10.09 55.49 0.56 -26.28 16 28 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 29 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 30 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 31 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.40 5.10 8.31 -40.82 -0.34 4.76 16 36 H 0.08 0.93 7.85 -51.93 -0.41 0.52 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.05 0.47 7.97 -51.93 -0.41 0.05 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.01 0.35 8.14 -51.92 -0.42 -0.07 16 48 H 0.11 2.99 5.87 -51.93 -0.30 2.68 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 393.86 15.07 5.94 5.94 Total: -1.00 -35.60 393.86 -11.99 -47.59 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.66 Total: 5.00 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -4.08 Total: 9.16 kcal Atomic # 7 Polarization: -72.48 SS G_CDS: -1.25 Total: -73.74 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.60 -11.99 -47.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088632609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.658 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds