Wall clock time and date at job start Wed Apr 1 2020 03:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.00138 * 2 1 4 4 C 1.54320 * 109.88543 * 238.89713 * 2 1 3 5 5 H 1.09002 * 110.87500 * 336.82588 * 4 2 1 6 6 N 1.46499 * 110.71790 * 100.02850 * 4 2 1 7 7 C 1.34780 * 119.99737 * 199.97650 * 6 4 2 8 8 O 1.21274 * 120.00105 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99507 * 179.97438 * 7 6 4 10 10 H 1.08995 * 110.46521 * 317.58552 * 9 7 6 11 11 C 1.54377 * 110.40926 * 80.00568 * 9 7 6 12 12 C 1.54259 * 105.06022 * 142.63131 * 11 9 7 13 13 C 1.54387 * 105.06271 * 359.97438 * 12 11 9 14 14 N 1.48559 * 104.58955 * 336.15098 * 13 12 11 15 15 C 1.38412 * 110.99855 * 159.04328 * 14 13 12 16 16 N 1.32491 * 119.21316 * 239.60233 * 15 14 13 17 17 C 1.32281 * 120.73830 * 179.71563 * 16 15 14 18 18 C 1.38606 * 119.19556 * 0.54840 * 17 16 15 19 19 C 1.38604 * 118.55916 * 359.72133 * 18 17 16 20 20 N 1.32277 * 119.19764 * 0.02562 * 19 18 17 21 21 C 1.55154 * 102.94846 * 218.39203 * 4 2 1 22 22 C 1.54913 * 101.57995 * 35.50103 * 21 4 2 23 23 N 1.47033 * 109.87993 * 121.09368 * 2 1 3 24 24 C 1.36933 * 125.64740 * 298.32216 * 23 2 1 25 25 H 1.07999 * 119.99870 * 0.02562 * 24 23 2 26 26 C 1.38811 * 120.00165 * 180.02562 * 24 23 2 27 27 N 1.31623 * 119.99900 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 120.00018 * 179.97438 * 26 24 23 29 29 H 1.48500 * 109.47345 * 59.99951 * 28 26 24 30 30 H 1.48507 * 109.47119 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.47430 * 299.99370 * 28 26 24 32 32 H 1.09004 * 109.47438 * 181.10115 * 1 2 3 33 33 H 1.08997 * 109.47373 * 301.09826 * 1 2 3 34 34 H 1.08998 * 109.47276 * 61.09809 * 1 2 3 35 35 H 0.97001 * 120.00343 * 19.98088 * 6 4 2 36 36 H 1.08991 * 110.32683 * 23.73468 * 11 9 7 37 37 H 1.09006 * 110.32026 * 261.51789 * 11 9 7 38 38 H 1.09000 * 110.32330 * 241.10231 * 12 11 9 39 39 H 1.09003 * 110.41347 * 118.93573 * 12 11 9 40 40 H 1.08999 * 110.41133 * 94.92454 * 13 12 11 41 41 H 1.08999 * 110.41276 * 217.37423 * 13 12 11 42 42 H 1.07996 * 120.39881 * 180.29961 * 17 16 15 43 43 H 1.07997 * 120.71763 * 179.75945 * 18 17 16 44 44 H 1.07999 * 120.40242 * 180.02562 * 19 18 17 45 45 H 1.08996 * 111.00832 * 153.57164 * 21 4 2 46 46 H 1.08998 * 111.00337 * 277.42945 * 21 4 2 47 47 H 1.09008 * 110.36663 * 81.83284 * 22 21 4 48 48 H 1.09000 * 110.37041 * 204.15306 * 22 21 4 49 49 H 0.96999 * 120.00057 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 1.3065 -1.4460 -1.6210 6 7 2.4555 0.1959 -2.2874 7 6 2.5560 -0.2163 -3.5667 8 8 2.3143 -1.3697 -3.8529 9 6 2.9676 0.7565 -4.6416 10 1 2.4649 1.7135 -4.5022 11 6 4.4995 0.9472 -4.6371 12 6 4.8920 1.0742 -6.1235 13 6 3.5642 0.9489 -6.9012 14 7 2.6636 0.2017 -5.9860 15 6 1.3360 0.4078 -6.3189 16 7 0.5201 0.9425 -5.4224 17 6 -0.7529 1.1579 -5.7103 18 6 -1.2317 0.8065 -6.9627 19 6 -0.3522 0.2444 -7.8746 20 7 0.9101 0.0606 -7.5245 21 6 3.2876 -1.5144 -0.6922 22 6 2.8144 -1.8794 0.7370 23 7 2.0299 -0.7141 1.1840 24 6 1.8048 -0.3556 2.4863 25 1 1.2141 0.5202 2.7109 26 6 2.3359 -1.1177 3.5178 27 7 3.0555 -2.1853 3.2440 28 14 2.0295 -0.6282 5.2942 29 1 0.5690 -0.6288 5.5630 30 1 2.6989 -1.5983 6.1976 31 1 2.5764 0.7313 5.5345 32 1 -0.3634 -1.0275 0.0197 33 1 -0.3634 0.5308 0.8799 34 1 -0.3634 0.4967 -0.8996 35 1 2.6485 1.1185 -2.0585 36 1 4.9875 0.0816 -4.1894 37 1 4.7664 1.8553 -4.0963 38 1 5.5726 0.2708 -6.4054 39 1 5.3524 2.0438 -6.3137 40 1 3.1545 1.9360 -7.1154 41 1 3.7158 0.3905 -7.8249 42 1 -1.4121 1.5985 -4.9770 43 1 -2.2675 0.9679 -7.2226 44 1 -0.6933 -0.0401 -8.8590 45 1 3.4851 -2.4112 -1.2793 46 1 4.1654 -0.8690 -0.6603 47 1 2.1885 -2.7716 0.7131 48 1 3.6715 -2.0338 1.3925 49 1 3.4263 -2.7181 3.9648 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088632609.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:17 Heat of formation + Delta-G solvation = 47.338662 kcal Electronic energy + Delta-G solvation = -31092.367535 eV Core-core repulsion = 27055.177743 eV Total energy + Delta-G solvation = -4037.189792 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.40722 -41.05680 -39.73741 -38.57970 -35.57546 -34.73667 -34.17080 -33.74903 -32.08797 -31.10177 -30.77560 -29.94413 -26.58223 -25.84674 -25.53719 -25.04448 -23.40789 -22.10972 -22.04277 -21.51807 -20.94447 -19.01650 -18.75009 -18.59893 -18.09514 -17.35391 -16.75612 -16.60124 -16.21147 -15.95243 -15.79773 -15.74500 -15.47860 -15.22122 -14.86834 -14.44595 -14.41091 -14.17653 -13.98313 -13.85301 -13.72747 -13.51852 -13.24897 -12.94798 -12.73609 -12.65286 -12.59689 -12.35927 -12.22410 -12.09144 -12.00145 -11.95305 -11.88537 -11.63066 -11.57208 -11.45995 -11.21548 -10.74358 -10.69308 -10.20175 -9.99409 -9.49571 -8.90108 -7.73744 -5.19273 -0.02138 0.18086 1.48727 1.51944 1.58038 1.65000 1.88756 2.38975 2.54406 2.75480 3.08134 3.36507 3.44222 3.52025 3.69280 3.77083 3.80498 3.85136 3.95336 3.98175 4.09216 4.13367 4.19652 4.27857 4.38490 4.42265 4.48717 4.59890 4.61919 4.67897 4.74093 4.79796 4.80382 4.93429 4.94807 5.04536 5.05430 5.12505 5.13307 5.27611 5.35325 5.44680 5.50073 5.59002 5.64551 5.70586 5.79626 6.23756 6.30379 6.62101 7.11350 7.12426 7.32941 7.79177 8.43440 9.28228 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002671 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.280469 B =10481.607551 C =11428.456171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.154 3.846 3 H 0.056 0.944 4 C 0.158 3.842 5 H 0.066 0.934 6 N -0.701 5.701 7 C 0.535 3.465 8 O -0.577 6.577 9 C 0.067 3.933 10 H 0.110 0.890 11 C -0.116 4.116 12 C -0.114 4.114 13 C 0.055 3.945 14 N -0.444 5.444 15 C 0.468 3.532 16 N -0.573 5.573 17 C 0.156 3.844 18 C -0.247 4.247 19 C 0.160 3.840 20 N -0.554 5.554 21 C -0.137 4.137 22 C 0.160 3.840 23 N -0.613 5.613 24 C -0.228 4.228 25 H 0.087 0.913 26 C -0.070 4.070 27 N -0.952 5.952 28 Si 0.980 3.020 29 H -0.280 1.280 30 H -0.298 1.298 31 H -0.274 1.274 32 H 0.030 0.970 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.116 0.884 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.192 0.808 43 H 0.185 0.815 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.073 0.927 47 H -0.020 1.020 48 H 0.079 0.921 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 13.995 -24.440 28.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.047 3.953 3 H 0.073 0.927 4 C 0.052 3.948 5 H 0.084 0.916 6 N -0.353 5.353 7 C 0.322 3.678 8 O -0.455 6.455 9 C -0.044 4.044 10 H 0.128 0.872 11 C -0.155 4.155 12 C -0.152 4.152 13 C -0.070 4.070 14 N -0.164 5.164 15 C 0.111 3.889 16 N -0.294 5.294 17 C -0.010 4.010 18 C -0.270 4.270 19 C -0.007 4.007 20 N -0.273 5.273 21 C -0.177 4.177 22 C 0.034 3.966 23 N -0.338 5.338 24 C -0.356 4.356 25 H 0.105 0.895 26 C -0.262 4.262 27 N -0.602 5.602 28 Si 0.808 3.192 29 H -0.206 1.206 30 H -0.224 1.224 31 H -0.199 1.199 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.249 0.751 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.130 0.870 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.209 0.791 43 H 0.202 0.798 44 H 0.220 0.780 45 H 0.077 0.923 46 H 0.092 0.908 47 H -0.002 1.002 48 H 0.097 0.903 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.897 12.380 -24.222 27.268 hybrid contribution -1.382 0.398 1.213 1.882 sum -3.280 12.778 -23.008 26.522 Atomic orbital electron populations 1.22101 0.96643 1.00439 1.01189 1.21160 0.93428 0.95110 0.85585 0.92659 1.21600 0.95841 0.90744 0.86579 0.91607 1.45736 1.69346 1.14015 1.06160 1.20508 0.75677 0.88399 0.83248 1.90673 1.50880 1.21330 1.82592 1.22564 0.99284 0.96381 0.86161 0.87244 1.22432 0.89595 1.04339 0.99112 1.22379 0.95596 1.04921 0.92258 1.23203 0.91643 0.96200 0.95969 1.61533 1.00001 1.50637 1.04268 1.21335 0.92324 0.88904 0.86317 1.68287 1.07359 1.17701 1.36004 1.23670 0.90310 0.90757 0.96275 1.23128 1.04317 1.04089 0.95429 1.23794 0.86692 0.89183 1.01011 1.68036 1.19762 1.20941 1.18558 1.23185 0.97856 0.99790 0.96884 1.21646 0.95672 0.87706 0.91573 1.44721 1.59718 1.28484 1.00896 1.19374 1.26457 1.08154 0.81654 0.89538 1.25633 1.00813 0.97688 1.02027 1.70046 1.40381 1.18977 1.30827 0.85127 0.77485 0.77174 0.79386 1.20639 1.22427 1.19929 0.95035 0.93098 0.91238 0.75069 0.91566 0.86555 0.89931 0.87011 0.92056 0.88454 0.79084 0.79784 0.78040 0.92323 0.90801 1.00169 0.90315 0.94454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.14 71.98 0.66 -4.67 16 2 C 0.15 6.14 3.48 45.34 0.16 6.30 16 3 H 0.06 2.03 7.69 -2.39 -0.02 2.01 16 4 C 0.16 5.99 2.76 46.18 0.13 6.12 16 5 H 0.07 2.82 7.41 -2.39 -0.02 2.81 16 6 N -0.70 -20.89 5.20 -436.92 -2.27 -23.17 16 7 C 0.54 17.17 6.37 87.66 0.56 17.73 16 8 O -0.58 -24.53 16.27 -3.01 -0.05 -24.58 16 9 C 0.07 1.60 2.24 44.31 0.10 1.70 16 10 H 0.11 2.30 7.23 -2.39 -0.02 2.28 16 11 C -0.12 -1.98 6.54 31.49 0.21 -1.77 16 12 C -0.11 -1.49 7.00 31.49 0.22 -1.27 16 13 C 0.05 0.98 6.19 86.45 0.54 1.52 16 14 N -0.44 -11.77 4.73 -675.34 -3.20 -14.96 16 15 C 0.47 12.74 6.86 261.48 1.79 14.53 16 16 N -0.57 -14.57 8.10 -197.98 -1.60 -16.18 16 17 C 0.16 2.82 11.30 84.71 0.96 3.78 16 18 C -0.25 -3.31 10.16 22.44 0.23 -3.08 16 19 C 0.16 2.63 11.30 84.71 0.96 3.58 16 20 N -0.55 -13.75 10.14 -197.98 -2.01 -15.76 16 21 C -0.14 -5.74 6.77 31.99 0.22 -5.53 16 22 C 0.16 8.25 5.89 86.86 0.51 8.76 16 23 N -0.61 -31.14 3.13 -668.25 -2.09 -33.23 16 24 C -0.23 -12.44 9.89 84.03 0.83 -11.61 16 25 H 0.09 4.45 7.83 -2.91 -0.02 4.43 16 26 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 27 N -0.95 -57.30 10.09 21.65 0.22 -57.08 16 28 Si 0.98 45.39 29.55 68.60 2.03 47.42 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 31 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 34 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 35 H 0.41 9.62 8.31 -92.71 -0.77 8.85 16 36 H 0.07 1.38 7.85 -2.39 -0.02 1.36 16 37 H 0.12 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.97 7.97 -2.39 -0.02 0.95 16 41 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.19 2.26 8.06 -2.91 -0.02 2.23 16 43 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 44 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 47 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 48 H 0.08 4.56 5.87 -2.39 -0.01 4.55 16 49 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -81.24 393.86 -0.27 -81.50 By element: Atomic # 1 Polarization: 23.20 SS G_CDS: 0.19 Total: 23.39 kcal Atomic # 6 Polarization: 24.14 SS G_CDS: 8.52 Total: 32.66 kcal Atomic # 7 Polarization: -149.43 SS G_CDS: -10.95 Total: -160.38 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.05 Total: -24.58 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.24 -0.27 -81.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088632609.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.840 kcal (2) G-P(sol) polarization free energy of solvation -81.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds