Wall clock time and date at job start Wed Apr 1 2020 03:56:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09005 * 109.99625 * 2 1
4 4 C 1.54328 * 109.88108 * 238.90661 * 2 1 3
5 5 H 1.09001 * 110.87199 * 336.82110 * 4 2 1
6 6 N 1.46503 * 110.72240 * 100.02440 * 4 2 1
7 7 C 1.34771 * 119.99764 * 199.97894 * 6 4 2
8 8 O 1.21275 * 120.00697 * 359.97438 * 7 6 4
9 9 C 1.50703 * 119.99550 * 179.97438 * 7 6 4
10 10 H 1.09004 * 109.50548 * 300.07440 * 9 7 6
11 11 C 1.53115 * 109.50637 * 60.19247 * 9 7 6
12 12 C 1.53123 * 109.16080 * 177.59381 * 11 9 7
13 13 C 1.53032 * 109.27842 * 302.34505 * 12 11 9
14 14 N 1.46842 * 109.52118 * 59.18339 * 13 12 11
15 15 C 1.46907 * 111.00042 * 174.15913 * 14 13 12
16 16 C 1.53000 * 109.47392 * 201.02738 * 15 14 13
17 17 F 1.39900 * 109.46814 * 294.21479 * 16 15 14
18 18 F 1.39905 * 109.46846 * 54.21004 * 16 15 14
19 19 C 1.46850 * 111.19974 * 298.25034 * 14 13 12
20 20 C 1.55153 * 102.94225 * 218.38714 * 4 2 1
21 21 C 1.54911 * 101.58394 * 35.49854 * 20 4 2
22 22 N 1.47021 * 109.88581 * 121.09777 * 2 1 3
23 23 C 1.36942 * 125.64514 * 298.39290 * 22 2 1
24 24 H 1.07992 * 120.00212 * 359.97438 * 23 22 2
25 25 C 1.38813 * 119.99722 * 179.97438 * 23 22 2
26 26 N 1.31615 * 120.00104 * 0.02562 * 25 23 22
27 27 Si 1.86795 * 119.99861 * 179.97438 * 25 23 22
28 28 H 1.48504 * 109.46934 * 89.99962 * 27 25 23
29 29 H 1.48498 * 109.47088 * 209.99940 * 27 25 23
30 30 H 1.48504 * 109.47453 * 330.00318 * 27 25 23
31 31 H 1.09001 * 109.47166 * 181.09679 * 1 2 3
32 32 H 1.08999 * 109.47018 * 301.09067 * 1 2 3
33 33 H 1.08994 * 109.47462 * 61.09672 * 1 2 3
34 34 H 0.97008 * 119.99372 * 19.97044 * 6 4 2
35 35 H 1.08996 * 109.52652 * 297.50122 * 11 9 7
36 36 H 1.09000 * 109.52104 * 57.62838 * 11 9 7
37 37 H 1.08995 * 109.50025 * 62.29136 * 12 11 9
38 38 H 1.09000 * 109.50150 * 182.36808 * 12 11 9
39 39 H 1.08992 * 109.46710 * 299.16043 * 13 12 11
40 40 H 1.09004 * 109.45979 * 179.19255 * 13 12 11
41 41 H 1.09002 * 109.46896 * 81.02552 * 15 14 13
42 42 H 1.08996 * 109.46810 * 321.02827 * 15 14 13
43 43 H 1.08990 * 109.47259 * 174.21230 * 16 15 14
44 44 H 1.08997 * 109.46407 * 181.76012 * 19 14 13
45 45 H 1.09000 * 109.46475 * 301.74618 * 19 14 13
46 46 H 1.08992 * 111.00784 * 153.57622 * 20 4 2
47 47 H 1.09004 * 111.00419 * 277.39310 * 20 4 2
48 48 H 1.09007 * 110.36308 * 81.82742 * 21 20 4
49 49 H 1.08997 * 110.37188 * 204.04252 * 21 20 4
50 50 H 0.96993 * 120.00235 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9027 1.0243 0.0000
4 6 2.0548 -0.7495 -1.2428
5 1 1.3064 -1.4458 -1.6211
6 7 2.4554 0.1961 -2.2876
7 6 2.5557 -0.2160 -3.5669
8 8 2.3148 -1.3696 -3.8531
9 6 2.9672 0.7569 -4.6417
10 1 2.2505 1.5772 -4.6840
11 6 4.3596 1.3096 -4.3252
12 6 4.7950 2.2505 -5.4521
13 6 4.7782 1.4902 -6.7800
14 7 3.4246 0.9824 -7.0376
15 6 3.3378 0.3665 -8.3685
16 6 1.8759 0.3279 -8.8183
17 9 1.1535 -0.5305 -7.9825
18 9 1.3320 1.6149 -8.7472
19 6 3.0033 0.0399 -5.9933
20 6 3.2876 -1.5142 -0.6925
21 6 2.8146 -1.8794 0.7367
22 7 2.0301 -0.7141 1.1839
23 6 1.8039 -0.3564 2.4862
24 1 1.2129 0.5191 2.7109
25 6 2.3344 -1.1191 3.5176
26 7 3.0552 -2.1858 3.2437
27 14 2.0265 -0.6308 5.2941
28 1 0.7861 -1.2870 5.7799
29 1 3.1748 -1.0609 6.1318
30 1 1.8738 0.8437 5.3829
31 1 -0.3633 -1.0275 0.0197
32 1 -0.3633 0.5307 0.8800
33 1 -0.3634 0.4967 -0.8996
34 1 2.6483 1.1188 -2.0586
35 1 4.3285 1.8584 -3.3840
36 1 5.0685 0.4857 -4.2432
37 1 4.1076 3.0946 -5.5072
38 1 5.8030 2.6145 -5.2532
39 1 5.4760 0.6545 -6.7289
40 1 5.0739 2.1613 -7.5865
41 1 3.7317 -0.6489 -8.3253
42 1 3.9211 0.9525 -9.0787
43 1 1.8211 -0.0335 -9.8451
44 1 2.0100 -0.3424 -6.2283
45 1 3.7096 -0.7890 -5.9456
46 1 3.4852 -2.4109 -1.2797
47 1 4.1656 -0.8689 -0.6611
48 1 2.1887 -2.7715 0.7127
49 1 3.6718 -2.0357 1.3916
50 1 3.4256 -2.7190 3.9644
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088823307.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:56:26
Heat of formation + Delta-G solvation = -137.056832 kcal
Electronic energy + Delta-G solvation = -31716.558624 eV
Core-core repulsion = 27220.683657 eV
Total energy + Delta-G solvation = -4495.874967 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 345.197 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-49.76965 -47.78837 -41.41466 -39.83339 -38.81834 -35.65675 -35.00393 -33.73610
-32.17761 -31.96828 -30.47476 -29.96455 -26.78119 -25.87999 -25.19083 -24.66942
-22.93842 -22.23932 -21.58102 -21.39090 -20.53950 -18.72528 -18.59229 -18.16807
-18.06740 -17.46728 -17.09359 -16.72814 -16.36214 -15.97412 -15.90681 -15.66987
-15.42289 -15.22438 -14.86375 -14.75757 -14.48727 -14.25412 -14.15727 -14.13679
-13.99893 -13.69028 -13.46544 -13.24832 -13.22241 -12.94873 -12.86580 -12.76027
-12.63447 -12.47632 -12.22500 -12.16063 -12.07889 -11.96522 -11.81956 -11.66943
-11.57839 -11.46529 -11.09169 -10.75345 -10.69451 -10.01873 -9.42334 -8.90665
-7.74977 -5.20205 1.48260 1.49939 1.58364 1.62607 2.05609 2.51590
2.76856 3.09340 3.35587 3.48754 3.51947 3.62423 3.69025 3.79859
3.83738 3.88611 3.96100 4.10240 4.17656 4.20818 4.25555 4.32552
4.48440 4.53147 4.56874 4.61090 4.61854 4.67707 4.72999 4.76967
4.80500 4.91638 4.94920 4.99575 5.04011 5.09532 5.13536 5.19413
5.35506 5.40743 5.49619 5.58786 5.62416 5.79221 5.90576 6.00560
6.29785 6.57115 7.10843 7.25929 7.78475 8.42299 9.27127
Molecular weight = 345.20amu
Principal moments of inertia in cm(-1)
A = 0.023253 B = 0.002239 C = 0.002177
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1203.843647 B =12505.150925 C =12859.187340
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.152 3.848
3 H 0.054 0.946
4 C 0.152 3.848
5 H 0.074 0.926
6 N -0.702 5.702
7 C 0.518 3.482
8 O -0.584 6.584
9 C -0.092 4.092
10 H 0.116 0.884
11 C -0.111 4.111
12 C -0.109 4.109
13 C 0.052 3.948
14 N -0.541 5.541
15 C 0.000 4.000
16 C 0.257 3.743
17 F -0.225 7.225
18 F -0.213 7.213
19 C 0.069 3.931
20 C -0.136 4.136
21 C 0.159 3.841
22 N -0.613 5.613
23 C -0.226 4.226
24 H 0.086 0.914
25 C -0.070 4.070
26 N -0.952 5.952
27 Si 0.979 3.021
28 H -0.291 1.291
29 H -0.296 1.296
30 H -0.266 1.266
31 H 0.033 0.967
32 H 0.049 0.951
33 H 0.070 0.930
34 H 0.413 0.587
35 H 0.084 0.916
36 H 0.055 0.945
37 H 0.078 0.922
38 H 0.091 0.909
39 H 0.035 0.965
40 H 0.099 0.901
41 H 0.073 0.927
42 H 0.133 0.867
43 H 0.154 0.846
44 H 0.078 0.922
45 H 0.027 0.973
46 H 0.061 0.939
47 H 0.070 0.930
48 H -0.018 1.018
49 H 0.078 0.922
50 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.169 11.151 -27.182 29.674
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.045 3.955
3 H 0.072 0.928
4 C 0.046 3.954
5 H 0.092 0.908
6 N -0.353 5.353
7 C 0.305 3.695
8 O -0.464 6.464
9 C -0.114 4.114
10 H 0.134 0.866
11 C -0.149 4.149
12 C -0.147 4.147
13 C -0.075 4.075
14 N -0.266 5.266
15 C -0.129 4.129
16 C 0.203 3.797
17 F -0.207 7.207
18 F -0.194 7.194
19 C -0.060 4.060
20 C -0.176 4.176
21 C 0.033 3.967
22 N -0.339 5.339
23 C -0.355 4.355
24 H 0.104 0.896
25 C -0.262 4.262
26 N -0.602 5.602
27 Si 0.808 3.192
28 H -0.218 1.218
29 H -0.223 1.223
30 H -0.191 1.191
31 H 0.053 0.947
32 H 0.068 0.932
33 H 0.089 0.911
34 H 0.250 0.750
35 H 0.102 0.898
36 H 0.074 0.926
37 H 0.097 0.903
38 H 0.109 0.891
39 H 0.053 0.947
40 H 0.117 0.883
41 H 0.091 0.909
42 H 0.151 0.849
43 H 0.171 0.829
44 H 0.097 0.903
45 H 0.045 0.955
46 H 0.080 0.920
47 H 0.089 0.911
48 H 0.000 1.000
49 H 0.096 0.904
50 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 3.704 10.711 -27.143 29.414
hybrid contribution 0.127 -0.895 1.583 1.823
sum 3.830 9.815 -25.560 27.647
Atomic orbital electron populations
1.22130 0.96616 1.00648 1.01251 1.21184 0.93457 0.95104 0.85724
0.92819 1.21695 0.96063 0.90918 0.86696 0.90764 1.45866 1.68976
1.14105 1.06387 1.21109 0.75859 0.88818 0.83727 1.90681 1.51557
1.21383 1.82773 1.21264 1.00738 0.97483 0.91884 0.86593 1.21613
0.93116 0.99587 1.00603 1.21567 1.02955 0.97860 0.92302 1.22273
0.87182 0.98727 0.99362 1.61867 1.26928 1.36673 1.01115 1.23367
0.94915 1.01886 0.92694 1.22592 0.88229 0.73098 0.95794 1.92905
1.80993 1.71193 1.75598 1.92958 1.87753 1.41194 1.97532 1.22003
1.01593 0.92328 0.90035 1.23167 0.97736 0.99817 0.96876 1.21651
0.95678 0.87747 0.91620 1.44728 1.59686 1.28554 1.00889 1.19402
1.26289 1.08104 0.81689 0.89612 1.25624 1.00840 0.97749 1.01996
1.70043 1.40377 1.19049 1.30734 0.85063 0.76473 0.78064 0.79642
1.21802 1.22255 1.19065 0.94739 0.93231 0.91119 0.74964 0.89757
0.92627 0.90295 0.89084 0.94700 0.88253 0.90933 0.84851 0.82918
0.90344 0.95503 0.92038 0.91098 0.99976 0.90431 0.94456
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -5.36 9.14 71.98 0.66 -4.71 16
2 C 0.15 5.98 3.48 45.34 0.16 6.13 16
3 H 0.05 1.96 7.69 -2.38 -0.02 1.94 16
4 C 0.15 5.54 2.76 46.18 0.13 5.67 16
5 H 0.07 3.00 7.41 -2.39 -0.02 2.98 16
6 N -0.70 -19.66 5.11 -436.92 -2.23 -21.89 16
7 C 0.52 15.08 7.15 87.66 0.63 15.71 16
8 O -0.58 -22.27 15.71 -3.01 -0.05 -22.32 16
9 C -0.09 -1.94 2.69 -11.49 -0.03 -1.97 16
10 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16
11 C -0.11 -1.80 5.16 30.67 0.16 -1.64 16
12 C -0.11 -1.26 6.09 30.65 0.19 -1.08 16
13 C 0.05 0.60 5.42 86.33 0.47 1.07 16
14 N -0.54 -8.61 4.40 -896.36 -3.95 -12.55 16
15 C 0.00 0.00 5.38 86.30 0.46 0.47 16
16 C 0.26 3.32 5.59 71.98 0.40 3.72 16
17 F -0.23 -4.81 14.68 44.97 0.66 -4.15 16
18 F -0.21 -3.91 17.15 44.97 0.77 -3.14 16
19 C 0.07 1.53 3.80 86.33 0.33 1.86 16
20 C -0.14 -5.53 6.77 31.99 0.22 -5.31 16
21 C 0.16 8.08 5.89 86.86 0.51 8.59 16
22 N -0.61 -30.90 3.13 -668.25 -2.09 -32.99 16
23 C -0.23 -12.32 9.89 84.03 0.83 -11.49 16
24 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16
25 C -0.07 -3.94 5.49 84.86 0.47 -3.47 16
26 N -0.95 -57.03 10.09 21.65 0.22 -56.81 16
27 Si 0.98 45.42 29.55 68.60 2.03 47.44 16
28 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16
29 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16
30 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16
31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16
32 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16
33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
34 H 0.41 9.08 7.79 -92.70 -0.72 8.36 16
35 H 0.08 1.19 7.66 -2.39 -0.02 1.17 16
36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16
37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16
38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16
39 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16
40 H 0.10 0.76 7.92 -2.39 -0.02 0.74 16
41 H 0.07 0.76 7.98 -2.39 -0.02 0.74 16
42 H 0.13 0.63 7.77 -2.39 -0.02 0.61 16
43 H 0.15 0.62 8.14 -2.39 -0.02 0.60 16
44 H 0.08 2.12 5.44 -2.39 -0.01 2.10 16
45 H 0.03 0.67 8.08 -2.39 -0.02 0.66 16
46 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
47 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16
48 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16
49 H 0.08 4.45 5.88 -2.39 -0.01 4.44 16
50 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16
Total: -1.00 -73.73 393.20 1.15 -72.59
By element:
Atomic # 1 Polarization: 20.06 SS G_CDS: 0.21 Total: 20.27 kcal
Atomic # 6 Polarization: 7.98 SS G_CDS: 5.57 Total: 13.55 kcal
Atomic # 7 Polarization: -116.19 SS G_CDS: -8.05 Total: -124.25 kcal
Atomic # 8 Polarization: -22.27 SS G_CDS: -0.05 Total: -22.32 kcal
Atomic # 9 Polarization: -8.72 SS G_CDS: 1.43 Total: -7.29 kcal
Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal
Total: -73.73 1.15 -72.59 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088823307.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.469 kcal
(2) G-P(sol) polarization free energy of solvation -73.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.203 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.588 kcal
(6) G-S(sol) free energy of system = (1) + (5) -137.057 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds