Wall clock time and date at job start Wed Apr 1 2020 03:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.99931 * 2 1 4 4 C 1.54337 * 109.98890 * 238.96493 * 2 1 3 5 5 H 1.08996 * 110.51638 * 336.96933 * 4 2 1 6 6 N 1.46501 * 111.00355 * 100.12876 * 4 2 1 7 7 C 1.34771 * 120.00032 * 200.23486 * 6 4 2 8 8 O 1.21287 * 120.00213 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00038 * 179.97438 * 7 6 4 10 10 H 1.08989 * 109.50273 * 60.00067 * 9 7 6 11 11 C 1.53118 * 109.50387 * 299.91926 * 9 7 6 12 12 C 1.53114 * 109.15966 * 182.40620 * 11 9 7 13 13 C 1.53033 * 109.28131 * 57.65954 * 12 11 9 14 14 N 1.46853 * 109.52049 * 300.81746 * 13 12 11 15 15 C 1.46896 * 111.00273 * 185.84000 * 14 13 12 16 16 C 1.52996 * 109.47117 * 284.39681 * 15 14 13 17 17 F 1.39904 * 109.47043 * 293.81046 * 16 15 14 18 18 F 1.39898 * 109.47446 * 53.81073 * 16 15 14 19 19 C 1.46851 * 111.23280 * 61.72306 * 14 13 12 20 20 C 1.55161 * 103.01876 * 218.66208 * 4 2 1 21 21 C 1.54909 * 101.58148 * 35.30919 * 20 4 2 22 22 N 1.47023 * 109.88656 * 121.09515 * 2 1 3 23 23 C 1.36936 * 125.64771 * 298.39904 * 22 2 1 24 24 H 1.08000 * 119.99894 * 327.34120 * 23 22 2 25 25 C 1.38813 * 119.99872 * 147.61427 * 23 22 2 26 26 N 1.31625 * 119.99830 * 164.55038 * 25 23 22 27 27 Si 1.86795 * 120.00134 * 344.55212 * 25 23 22 28 28 H 1.48503 * 109.47186 * 84.74912 * 27 25 23 29 29 H 1.48498 * 109.47183 * 204.74818 * 27 25 23 30 30 H 1.48494 * 109.47368 * 324.74866 * 27 25 23 31 31 H 1.09001 * 109.46987 * 300.35427 * 1 2 3 32 32 H 1.09000 * 109.47555 * 60.35464 * 1 2 3 33 33 H 1.09002 * 109.47064 * 180.36086 * 1 2 3 34 34 H 0.97005 * 119.99895 * 20.22774 * 6 4 2 35 35 H 1.09005 * 109.52401 * 302.30946 * 11 9 7 36 36 H 1.08997 * 109.52485 * 62.43666 * 11 9 7 37 37 H 1.09006 * 109.49933 * 177.59527 * 12 11 9 38 38 H 1.08996 * 109.50753 * 297.70989 * 12 11 9 39 39 H 1.08998 * 109.46810 * 60.83512 * 13 12 11 40 40 H 1.09000 * 109.46479 * 180.80520 * 13 12 11 41 41 H 1.09007 * 109.46986 * 44.39328 * 15 14 13 42 42 H 1.08995 * 109.47089 * 164.39316 * 15 14 13 43 43 H 1.08998 * 109.47427 * 173.81167 * 16 15 14 44 44 H 1.08998 * 109.50109 * 178.28216 * 19 14 13 45 45 H 1.09003 * 109.42471 * 58.31286 * 19 14 13 46 46 H 1.08994 * 111.00841 * 277.23318 * 20 4 2 47 47 H 1.08999 * 111.00381 * 153.37928 * 20 4 2 48 48 H 1.09006 * 110.36665 * 204.15285 * 21 20 4 49 49 H 1.08999 * 110.46496 * 81.87496 * 21 20 4 50 50 H 0.96997 * 119.99726 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3053 -1.4406 -1.6196 6 7 2.4631 0.1938 -2.2893 7 6 2.5608 -0.2208 -3.5679 8 8 2.3134 -1.3737 -3.8521 9 6 2.9774 0.7479 -4.6445 10 1 3.9693 1.1387 -4.4183 11 6 1.9749 1.9035 -4.7082 12 6 2.3717 2.8511 -5.8435 13 6 2.4181 2.0714 -7.1595 14 7 3.3917 0.9777 -7.0478 15 6 3.5646 0.2931 -8.3360 16 6 2.3556 -0.6061 -8.6018 17 9 2.3280 -1.6407 -7.6604 18 9 1.1819 0.1483 -8.5003 19 6 3.0072 0.0288 -5.9951 20 6 3.2864 -1.5183 -0.6916 21 6 2.8100 -1.8825 0.7367 22 7 2.0301 -0.7140 1.1839 23 6 1.8039 -0.3564 2.4862 24 1 1.7093 0.6863 2.7512 25 6 1.7018 -1.3338 3.4667 26 7 1.7900 -1.0028 4.7376 27 14 1.4395 -3.1187 2.9824 28 1 2.7508 -3.7486 2.6843 29 1 0.7848 -3.8439 4.1007 30 1 0.5743 -3.1826 1.7773 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.6612 1.1158 -2.0619 35 1 0.9759 1.5093 -4.8951 36 1 1.9818 2.4444 -3.7619 37 1 1.6377 3.6531 -5.9214 38 1 3.3543 3.2752 -5.6369 39 1 1.4318 1.6593 -7.3725 40 1 2.7143 2.7402 -7.9677 41 1 3.6492 1.0329 -9.1321 42 1 4.4694 -0.3139 -8.3063 43 1 2.4303 -1.0286 -9.6038 44 1 3.7309 -0.7854 -5.9572 45 1 2.0184 -0.3743 -6.2139 46 1 4.1669 -0.8769 -0.6580 47 1 3.4807 -2.4155 -1.2792 48 1 3.6657 -2.0412 1.3931 49 1 2.1807 -2.7722 0.7133 50 1 1.7183 -1.6857 5.4226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088823308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:30 Heat of formation + Delta-G solvation = -107.476368 kcal Electronic energy + Delta-G solvation = -32190.444861 eV Core-core repulsion = 27695.852599 eV Total energy + Delta-G solvation = -4494.592262 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.50193 -47.38118 -40.33422 -38.79012 -37.61264 -34.48730 -33.96004 -32.12888 -31.28840 -30.63676 -29.54294 -29.05694 -25.36417 -24.65513 -23.98358 -23.64643 -22.51154 -21.24660 -20.47595 -20.10658 -19.44614 -18.06119 -17.75118 -17.15077 -16.92567 -16.54195 -16.13861 -15.71808 -15.22417 -15.07808 -14.86087 -14.61855 -14.32804 -14.21747 -13.89042 -13.63463 -13.53590 -13.38836 -13.19571 -12.95808 -12.88282 -12.66294 -12.57861 -12.22576 -12.15769 -12.00449 -11.74706 -11.52999 -11.51568 -11.16605 -11.11738 -10.95887 -10.83112 -10.74687 -10.65718 -10.47762 -10.11548 -9.99351 -9.60918 -9.49153 -8.78123 -8.62276 -8.59640 -6.91578 -5.97818 -3.40580 2.74589 3.04758 3.36479 3.37698 3.48101 3.52629 3.59495 3.87373 4.06925 4.27327 4.42360 4.53359 4.54220 4.64889 4.83183 4.89339 4.98641 5.06060 5.12188 5.18660 5.20068 5.26883 5.29635 5.36674 5.40108 5.50704 5.61515 5.63935 5.64619 5.75465 5.88479 5.90655 5.99313 6.04161 6.09841 6.22690 6.35890 6.44790 6.52345 6.55226 6.62013 6.66749 6.76783 6.86512 7.02766 7.66535 7.85259 8.31878 8.37289 8.82394 9.65977 10.19813 11.18297 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.002479 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.473446 B =11294.183333 C =11823.704484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.044 0.956 4 C 0.134 3.866 5 H 0.093 0.907 6 N -0.714 5.714 7 C 0.518 3.482 8 O -0.540 6.540 9 C -0.104 4.104 10 H 0.104 0.896 11 C -0.114 4.114 12 C -0.113 4.113 13 C 0.032 3.968 14 N -0.532 5.532 15 C 0.011 3.989 16 C 0.220 3.780 17 F -0.194 7.194 18 F -0.203 7.203 19 C 0.064 3.936 20 C -0.140 4.140 21 C 0.114 3.886 22 N -0.600 5.600 23 C -0.242 4.242 24 H 0.086 0.914 25 C 0.031 3.969 26 N -0.910 5.910 27 Si 0.888 3.112 28 H -0.284 1.284 29 H -0.302 1.302 30 H -0.273 1.273 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.049 0.951 34 H 0.399 0.601 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.025 0.975 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.521 6.855 -29.634 30.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.062 0.938 4 C 0.029 3.971 5 H 0.111 0.889 6 N -0.365 5.365 7 C 0.303 3.697 8 O -0.417 6.417 9 C -0.126 4.126 10 H 0.122 0.878 11 C -0.152 4.152 12 C -0.151 4.151 13 C -0.095 4.095 14 N -0.254 5.254 15 C -0.119 4.119 16 C 0.164 3.836 17 F -0.176 7.176 18 F -0.184 7.184 19 C -0.063 4.063 20 C -0.179 4.179 21 C -0.011 4.011 22 N -0.327 5.327 23 C -0.369 4.369 24 H 0.104 0.896 25 C -0.169 4.169 26 N -0.552 5.552 27 Si 0.719 3.281 28 H -0.211 1.211 29 H -0.230 1.230 30 H -0.198 1.198 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.126 0.874 44 H 0.104 0.896 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.043 0.957 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.742 6.205 -29.383 30.264 hybrid contribution -0.927 -1.069 -0.112 1.419 sum 2.816 5.136 -29.495 30.071 Atomic orbital electron populations 1.22174 0.97195 1.01467 1.00494 1.21137 0.92785 0.95232 0.86180 0.93786 1.22101 0.96899 0.91190 0.86889 0.88928 1.46025 1.69334 1.14109 1.07022 1.20453 0.77179 0.88759 0.83291 1.90712 1.49441 1.19275 1.82234 1.21324 1.01612 0.95642 0.93987 0.87841 1.21590 0.98513 0.95427 0.99660 1.21559 1.02363 0.97475 0.93715 1.22547 0.95484 0.93042 0.98441 1.61988 1.48116 1.11303 1.04035 1.23420 0.96531 0.97928 0.93984 1.22930 0.84418 0.83133 0.93091 1.93044 1.96657 1.60070 1.67782 1.92900 1.51742 1.76736 1.97028 1.22237 1.01988 0.93334 0.88744 1.23111 0.97611 1.00090 0.97105 1.21961 0.94979 0.91238 0.92951 1.44730 1.57328 1.29226 1.01412 1.18517 1.45223 0.93640 0.79536 0.89602 1.25343 0.98541 0.98064 0.94959 1.69774 1.52488 1.33730 0.99241 0.86820 0.78441 0.86001 0.76873 1.21096 1.22997 1.19815 0.91844 0.94211 0.93181 0.76647 0.91502 0.90829 0.90935 0.90870 0.92116 0.90698 0.87698 0.87343 0.87376 0.89562 0.92069 0.91042 0.91353 0.92290 0.95745 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.14 37.16 0.34 -2.53 16 2 C 0.15 2.95 3.49 -66.95 -0.23 2.72 16 3 H 0.04 0.81 7.70 -51.93 -0.40 0.41 16 4 C 0.13 2.30 2.76 -66.09 -0.18 2.12 16 5 H 0.09 1.74 7.39 -51.93 -0.38 1.36 16 6 N -0.71 -9.74 5.11 -52.02 -0.27 -10.00 16 7 C 0.52 7.28 7.15 -10.99 -0.08 7.20 16 8 O -0.54 -9.74 15.71 5.55 0.09 -9.65 16 9 C -0.10 -1.09 2.69 -91.69 -0.25 -1.34 16 10 H 0.10 0.98 8.14 -51.94 -0.42 0.56 16 11 C -0.11 -1.00 5.16 -26.61 -0.14 -1.14 16 12 C -0.11 -0.81 6.09 -26.66 -0.16 -0.98 16 13 C 0.03 0.24 5.01 -3.83 -0.02 0.22 16 14 N -0.53 -4.39 4.86 -234.67 -1.14 -5.53 16 15 C 0.01 0.06 5.99 -3.83 -0.02 0.04 16 16 C 0.22 1.52 5.14 37.16 0.19 1.71 16 17 F -0.19 -2.09 13.97 2.25 0.03 -2.06 16 18 F -0.20 -1.84 13.89 2.25 0.03 -1.81 16 19 C 0.06 0.70 2.56 -3.83 -0.01 0.69 16 20 C -0.14 -2.52 6.77 -24.58 -0.17 -2.68 16 21 C 0.11 2.51 4.85 -2.53 -0.01 2.50 16 22 N -0.60 -14.23 2.76 -162.56 -0.45 -14.68 16 23 C -0.24 -6.71 10.15 -15.06 -0.15 -6.86 16 24 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 25 C 0.03 0.89 5.47 -17.43 -0.10 0.80 16 26 N -0.91 -27.87 13.97 55.49 0.78 -27.10 16 27 Si 0.89 22.93 24.45 -169.99 -4.16 18.78 16 28 H -0.28 -7.13 6.98 56.52 0.39 -6.73 16 29 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 30 H -0.27 -6.98 6.73 56.52 0.38 -6.60 16 31 H 0.06 1.26 8.02 -51.93 -0.42 0.84 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.40 4.45 7.80 -40.82 -0.32 4.14 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.57 7.65 -51.93 -0.40 0.17 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.54 5.51 -51.93 -0.29 0.25 16 40 H 0.07 0.45 7.96 -51.93 -0.41 0.04 16 41 H 0.10 0.36 7.88 -51.93 -0.41 -0.05 16 42 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.09 1.04 7.82 -51.93 -0.41 0.63 16 45 H 0.06 0.80 5.66 -51.93 -0.29 0.51 16 46 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 47 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 48 H 0.06 1.35 7.73 -51.93 -0.40 0.95 16 49 H 0.03 0.57 5.22 -51.93 -0.27 0.30 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -33.78 382.09 -8.53 -42.31 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -8.21 Total: 1.51 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.99 Total: 2.47 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -1.08 Total: -57.30 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: 0.09 Total: -9.65 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.06 Total: -3.86 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.16 Total: 18.78 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.78 -8.53 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088823308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.167 kcal (2) G-P(sol) polarization free energy of solvation -33.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds