Wall clock time and date at job start Wed Apr 1 2020 03:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.99931 * 2 1 4 4 C 1.54337 * 109.98890 * 238.96493 * 2 1 3 5 5 H 1.08996 * 110.51638 * 336.96933 * 4 2 1 6 6 N 1.46501 * 111.00355 * 100.12876 * 4 2 1 7 7 C 1.34771 * 120.00032 * 200.23486 * 6 4 2 8 8 O 1.21287 * 120.00213 * 359.97438 * 7 6 4 9 9 C 1.50701 * 120.00038 * 179.97438 * 7 6 4 10 10 H 1.08989 * 109.50273 * 60.00067 * 9 7 6 11 11 C 1.53118 * 109.50387 * 299.91926 * 9 7 6 12 12 C 1.53114 * 109.15966 * 182.40620 * 11 9 7 13 13 C 1.53033 * 109.28131 * 57.65954 * 12 11 9 14 14 N 1.46853 * 109.52049 * 300.81746 * 13 12 11 15 15 C 1.46896 * 111.00273 * 185.84000 * 14 13 12 16 16 C 1.52996 * 109.47117 * 284.39681 * 15 14 13 17 17 F 1.39904 * 109.47043 * 293.81046 * 16 15 14 18 18 F 1.39898 * 109.47446 * 53.81073 * 16 15 14 19 19 C 1.46851 * 111.23280 * 61.72306 * 14 13 12 20 20 C 1.55161 * 103.01876 * 218.66208 * 4 2 1 21 21 C 1.54909 * 101.58148 * 35.30919 * 20 4 2 22 22 N 1.47023 * 109.88656 * 121.09515 * 2 1 3 23 23 C 1.36936 * 125.64771 * 298.39904 * 22 2 1 24 24 H 1.08000 * 119.99894 * 327.34120 * 23 22 2 25 25 C 1.38813 * 119.99872 * 147.61427 * 23 22 2 26 26 N 1.31625 * 119.99830 * 164.55038 * 25 23 22 27 27 Si 1.86795 * 120.00134 * 344.55212 * 25 23 22 28 28 H 1.48503 * 109.47186 * 84.74912 * 27 25 23 29 29 H 1.48498 * 109.47183 * 204.74818 * 27 25 23 30 30 H 1.48494 * 109.47368 * 324.74866 * 27 25 23 31 31 H 1.09001 * 109.46987 * 300.35427 * 1 2 3 32 32 H 1.09000 * 109.47555 * 60.35464 * 1 2 3 33 33 H 1.09002 * 109.47064 * 180.36086 * 1 2 3 34 34 H 0.97005 * 119.99895 * 20.22774 * 6 4 2 35 35 H 1.09005 * 109.52401 * 302.30946 * 11 9 7 36 36 H 1.08997 * 109.52485 * 62.43666 * 11 9 7 37 37 H 1.09006 * 109.49933 * 177.59527 * 12 11 9 38 38 H 1.08996 * 109.50753 * 297.70989 * 12 11 9 39 39 H 1.08998 * 109.46810 * 60.83512 * 13 12 11 40 40 H 1.09000 * 109.46479 * 180.80520 * 13 12 11 41 41 H 1.09007 * 109.46986 * 44.39328 * 15 14 13 42 42 H 1.08995 * 109.47089 * 164.39316 * 15 14 13 43 43 H 1.08998 * 109.47427 * 173.81167 * 16 15 14 44 44 H 1.08998 * 109.50109 * 178.28216 * 19 14 13 45 45 H 1.09003 * 109.42471 * 58.31286 * 19 14 13 46 46 H 1.08994 * 111.00841 * 277.23318 * 20 4 2 47 47 H 1.08999 * 111.00381 * 153.37928 * 20 4 2 48 48 H 1.09006 * 110.36665 * 204.15285 * 21 20 4 49 49 H 1.08999 * 110.46496 * 81.87496 * 21 20 4 50 50 H 0.96997 * 119.99726 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3053 -1.4406 -1.6196 6 7 2.4631 0.1938 -2.2893 7 6 2.5608 -0.2208 -3.5679 8 8 2.3134 -1.3737 -3.8521 9 6 2.9774 0.7479 -4.6445 10 1 3.9693 1.1387 -4.4183 11 6 1.9749 1.9035 -4.7082 12 6 2.3717 2.8511 -5.8435 13 6 2.4181 2.0714 -7.1595 14 7 3.3917 0.9777 -7.0478 15 6 3.5646 0.2931 -8.3360 16 6 2.3556 -0.6061 -8.6018 17 9 2.3280 -1.6407 -7.6604 18 9 1.1819 0.1483 -8.5003 19 6 3.0072 0.0288 -5.9951 20 6 3.2864 -1.5183 -0.6916 21 6 2.8100 -1.8825 0.7367 22 7 2.0301 -0.7140 1.1839 23 6 1.8039 -0.3564 2.4862 24 1 1.7093 0.6863 2.7512 25 6 1.7018 -1.3338 3.4667 26 7 1.7900 -1.0028 4.7376 27 14 1.4395 -3.1187 2.9824 28 1 2.7508 -3.7486 2.6843 29 1 0.7848 -3.8439 4.1007 30 1 0.5743 -3.1826 1.7773 31 1 -0.3633 0.5193 0.8868 32 1 -0.3634 0.5083 -0.8931 33 1 -0.3633 -1.0277 0.0065 34 1 2.6612 1.1158 -2.0619 35 1 0.9759 1.5093 -4.8951 36 1 1.9818 2.4444 -3.7619 37 1 1.6377 3.6531 -5.9214 38 1 3.3543 3.2752 -5.6369 39 1 1.4318 1.6593 -7.3725 40 1 2.7143 2.7402 -7.9677 41 1 3.6492 1.0329 -9.1321 42 1 4.4694 -0.3139 -8.3063 43 1 2.4303 -1.0286 -9.6038 44 1 3.7309 -0.7854 -5.9572 45 1 2.0184 -0.3743 -6.2139 46 1 4.1669 -0.8769 -0.6580 47 1 3.4807 -2.4155 -1.2792 48 1 3.6657 -2.0412 1.3931 49 1 2.1807 -2.7722 0.7133 50 1 1.7183 -1.6857 5.4226 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088823308.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:29 Heat of formation + Delta-G solvation = -132.021773 kcal Electronic energy + Delta-G solvation = -32191.509229 eV Core-core repulsion = 27695.852599 eV Total energy + Delta-G solvation = -4495.656630 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.197 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.11718 -48.02722 -41.41840 -39.92389 -38.87548 -35.66689 -35.03070 -33.99315 -32.23645 -32.13433 -30.97782 -29.89195 -26.76614 -25.85512 -25.27438 -24.76387 -23.08545 -22.69352 -21.60501 -21.30297 -20.67607 -18.89495 -18.74388 -18.36263 -18.02702 -17.50233 -17.27908 -17.03646 -16.56757 -16.14557 -15.85895 -15.63677 -15.33157 -15.30801 -15.11430 -14.70591 -14.63976 -14.51918 -14.30676 -14.20745 -14.04426 -13.91409 -13.58402 -13.41796 -13.22064 -13.18096 -12.89613 -12.72950 -12.66351 -12.52849 -12.43730 -12.26508 -12.17367 -12.01057 -11.78462 -11.70215 -11.65904 -11.51965 -11.33023 -10.80661 -10.70958 -10.04369 -9.24678 -8.91463 -8.21346 -5.59693 1.28791 1.36130 1.45324 1.62955 2.03518 2.38425 2.71757 3.05476 3.07130 3.27996 3.41687 3.58824 3.60149 3.65143 3.75978 3.83116 3.86633 3.92543 4.11981 4.20810 4.23608 4.29737 4.37584 4.44486 4.52948 4.54882 4.62549 4.71911 4.74284 4.75432 4.80092 4.84520 4.89359 4.94912 4.98585 4.99596 5.09222 5.13651 5.14771 5.20264 5.36561 5.42575 5.56974 5.80142 5.90935 6.01879 6.13078 6.56813 6.75648 7.26126 7.49972 8.12060 8.98845 Molecular weight = 345.20amu Principal moments of inertia in cm(-1) A = 0.023436 B = 0.002479 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.473446 B =11294.183333 C =11823.704484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.061 0.939 4 C 0.149 3.851 5 H 0.078 0.922 6 N -0.702 5.702 7 C 0.519 3.481 8 O -0.581 6.581 9 C -0.095 4.095 10 H 0.122 0.878 11 C -0.112 4.112 12 C -0.109 4.109 13 C 0.030 3.970 14 N -0.532 5.532 15 C 0.010 3.990 16 C 0.208 3.792 17 F -0.221 7.221 18 F -0.217 7.217 19 C 0.074 3.926 20 C -0.126 4.126 21 C 0.108 3.892 22 N -0.616 5.616 23 C -0.224 4.224 24 H 0.060 0.940 25 C -0.023 4.023 26 N -0.954 5.954 27 Si 0.942 3.058 28 H -0.274 1.274 29 H -0.307 1.307 30 H -0.271 1.271 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.415 0.585 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.147 0.853 44 H 0.069 0.931 45 H 0.034 0.966 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.046 0.954 49 H 0.015 0.985 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 8.168 -32.761 34.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.079 0.921 4 C 0.043 3.957 5 H 0.096 0.904 6 N -0.354 5.354 7 C 0.306 3.694 8 O -0.461 6.461 9 C -0.117 4.117 10 H 0.140 0.860 11 C -0.150 4.150 12 C -0.147 4.147 13 C -0.097 4.097 14 N -0.255 5.255 15 C -0.119 4.119 16 C 0.153 3.847 17 F -0.202 7.202 18 F -0.198 7.198 19 C -0.055 4.055 20 C -0.166 4.166 21 C -0.017 4.017 22 N -0.343 5.343 23 C -0.353 4.353 24 H 0.077 0.923 25 C -0.219 4.219 26 N -0.600 5.600 27 Si 0.771 3.229 28 H -0.200 1.200 29 H -0.235 1.235 30 H -0.197 1.197 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.252 0.748 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.064 0.936 40 H 0.114 0.886 41 H 0.152 0.848 42 H 0.136 0.864 43 H 0.164 0.836 44 H 0.087 0.913 45 H 0.052 0.948 46 H 0.105 0.895 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.735 7.554 -32.562 33.760 hybrid contribution -1.220 -1.393 0.750 1.998 sum 3.515 6.160 -31.812 32.593 Atomic orbital electron populations 1.22094 0.96625 1.00666 1.01310 1.21289 0.93242 0.95685 0.85290 0.92097 1.21698 0.96088 0.91175 0.86766 0.90357 1.45827 1.68987 1.14312 1.06242 1.21097 0.75953 0.88713 0.83653 1.90702 1.51220 1.21361 1.82805 1.21320 1.02873 0.95133 0.92344 0.86011 1.21609 0.97000 0.95057 1.01297 1.21565 1.03227 0.97238 0.92661 1.22616 0.94649 0.93006 0.99424 1.62004 1.47866 1.10990 1.04606 1.23611 0.96208 0.98531 0.93563 1.23482 0.84181 0.82886 0.94183 1.92992 1.96757 1.61364 1.69121 1.92871 1.52739 1.77091 1.97139 1.22002 0.99975 0.93526 0.89971 1.23015 0.98298 1.00882 0.94380 1.21996 0.94199 0.90362 0.95159 1.44810 1.58279 1.29913 1.01283 1.18415 1.42995 0.92459 0.81473 0.92261 1.25877 0.99584 1.01477 0.94920 1.69883 1.55129 1.34764 1.00228 0.85950 0.78652 0.82113 0.76167 1.19955 1.23517 1.19670 0.93598 0.90800 0.94750 0.74780 0.93177 0.89352 0.89539 0.89963 0.93640 0.88619 0.84763 0.86360 0.83554 0.91255 0.94789 0.89546 0.90492 0.93540 0.96705 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.14 71.98 0.66 -4.68 16 2 C 0.15 5.57 3.49 45.34 0.16 5.73 16 3 H 0.06 2.08 7.70 -2.39 -0.02 2.06 16 4 C 0.15 4.84 2.76 46.19 0.13 4.97 16 5 H 0.08 2.85 7.39 -2.39 -0.02 2.83 16 6 N -0.70 -17.42 5.11 -436.89 -2.23 -19.65 16 7 C 0.52 13.73 7.15 87.66 0.63 14.36 16 8 O -0.58 -20.70 15.71 -3.05 -0.05 -20.75 16 9 C -0.10 -1.80 2.69 -11.49 -0.03 -1.83 16 10 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 11 C -0.11 -1.68 5.16 30.67 0.16 -1.52 16 12 C -0.11 -1.22 6.09 30.64 0.19 -1.03 16 13 C 0.03 0.37 5.01 86.32 0.43 0.81 16 14 N -0.53 -7.54 4.86 -896.35 -4.35 -11.89 16 15 C 0.01 0.09 5.99 86.30 0.52 0.60 16 16 C 0.21 2.55 5.14 71.98 0.37 2.92 16 17 F -0.22 -4.74 13.97 44.97 0.63 -4.11 16 18 F -0.22 -3.72 13.89 44.97 0.62 -3.09 16 19 C 0.07 1.52 2.56 86.33 0.22 1.75 16 20 C -0.13 -4.32 6.77 31.99 0.22 -4.10 16 21 C 0.11 4.65 4.85 86.85 0.42 5.07 16 22 N -0.62 -28.90 2.76 -668.22 -1.85 -30.74 16 23 C -0.22 -12.63 10.15 84.03 0.85 -11.77 16 24 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 25 C -0.02 -1.35 5.47 84.86 0.46 -0.88 16 26 N -0.95 -59.93 13.97 21.65 0.30 -59.63 16 27 Si 0.94 48.06 24.45 68.60 1.68 49.73 16 28 H -0.27 -13.32 6.98 99.48 0.69 -12.63 16 29 H -0.31 -15.77 7.11 99.48 0.71 -15.06 16 30 H -0.27 -13.60 6.73 99.48 0.67 -12.94 16 31 H 0.04 1.80 8.02 -2.39 -0.02 1.78 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.41 7.85 7.80 -92.70 -0.72 7.13 16 35 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.09 1.06 7.65 -2.39 -0.02 1.04 16 37 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.05 0.73 5.51 -2.39 -0.01 0.72 16 40 H 0.10 0.80 7.96 -2.39 -0.02 0.79 16 41 H 0.13 0.41 7.88 -2.38 -0.02 0.39 16 42 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.07 1.65 7.82 -2.39 -0.02 1.63 16 45 H 0.03 0.90 5.66 -2.39 -0.01 0.88 16 46 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 48 H 0.05 2.10 7.73 -2.38 -0.02 2.08 16 49 H 0.02 0.69 5.22 -2.39 -0.01 0.68 16 50 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -75.70 382.09 0.30 -75.40 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.17 Total: 14.35 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 5.38 Total: 10.39 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -8.13 Total: -121.92 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 1.25 Total: -7.20 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.68 Total: 49.73 kcal Total: -75.70 0.30 -75.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088823308.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.625 kcal (2) G-P(sol) polarization free energy of solvation -75.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds