Wall clock time and date at job start Wed Apr 1 2020 03:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.87346 * 2 1 4 4 C 1.54316 * 109.88350 * 238.82060 * 2 1 3 5 5 H 1.09006 * 110.72247 * 336.75032 * 4 2 1 6 6 N 1.46498 * 110.72413 * 100.02422 * 4 2 1 7 7 C 1.34770 * 120.00353 * 205.00278 * 6 4 2 8 8 O 1.21517 * 120.00257 * 359.97438 * 7 6 4 9 9 C 1.48128 * 119.99983 * 180.02562 * 7 6 4 10 10 C 1.39252 * 120.04656 * 179.72054 * 9 7 6 11 11 N 1.32198 * 120.06114 * 179.77176 * 10 9 7 12 12 C 1.31927 * 120.17054 * 0.48634 * 11 10 9 13 13 C 1.39660 * 120.08817 * 359.76846 * 12 11 10 14 14 N 1.38978 * 120.02842 * 180.02562 * 13 12 11 15 15 C 1.48541 * 110.99947 * 176.49970 * 14 13 12 16 16 C 1.54938 * 103.22375 * 159.71926 * 15 14 13 17 17 C 1.54598 * 102.92515 * 322.58494 * 16 15 14 18 18 C 1.47907 * 111.00024 * 293.89363 * 14 13 12 19 19 N 1.32342 * 119.94214 * 359.97438 * 13 12 11 20 20 C 1.55155 * 102.94477 * 218.39011 * 4 2 1 21 21 C 1.54917 * 101.58243 * 35.49899 * 20 4 2 22 22 N 1.47025 * 109.88180 * 121.01108 * 2 1 3 23 23 C 1.36941 * 125.64743 * 298.32166 * 22 2 1 24 24 H 1.07993 * 119.99976 * 359.97438 * 23 22 2 25 25 C 1.38814 * 119.99620 * 180.02562 * 23 22 2 26 26 N 1.31620 * 120.00250 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99698 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47095 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47150 * 120.00014 * 27 25 23 30 30 H 1.48507 * 109.46882 * 239.99810 * 27 25 23 31 31 H 1.09008 * 109.46819 * 300.44316 * 1 2 3 32 32 H 1.09000 * 109.47014 * 180.44890 * 1 2 3 33 33 H 1.08997 * 109.47103 * 60.44133 * 1 2 3 34 34 H 0.97008 * 119.99374 * 25.00308 * 6 4 2 35 35 H 1.07998 * 119.96946 * 0.02562 * 10 9 7 36 36 H 1.08001 * 119.95413 * 179.75269 * 12 11 10 37 37 H 1.09001 * 110.66369 * 278.14957 * 15 14 13 38 38 H 1.08996 * 110.66470 * 41.28115 * 15 14 13 39 39 H 1.09004 * 110.72242 * 204.22332 * 16 15 14 40 40 H 1.09004 * 110.87549 * 81.01533 * 16 15 14 41 41 H 1.09000 * 110.30408 * 263.04169 * 17 16 15 42 42 H 1.08998 * 110.39009 * 140.91716 * 17 16 15 43 43 H 1.09004 * 109.91360 * 333.51015 * 18 14 13 44 44 H 1.08995 * 109.91410 * 94.80270 * 18 14 13 45 45 H 1.09003 * 111.00695 * 277.43043 * 20 4 2 46 46 H 1.08999 * 111.01019 * 153.57153 * 20 4 2 47 47 H 1.08993 * 110.36662 * 204.15559 * 21 20 4 48 48 H 1.09002 * 110.36387 * 81.83023 * 21 20 4 49 49 H 0.96993 * 119.99822 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2415 5 1 1.3051 -1.4483 -1.6161 6 7 2.4554 0.1927 -2.2878 7 6 2.4581 -0.1936 -3.5789 8 8 2.1287 -1.3251 -3.8753 9 6 2.8637 0.7608 -4.6367 10 6 2.8725 0.3609 -5.9705 11 7 3.2301 1.2138 -6.9152 12 6 3.5890 2.4429 -6.5975 13 6 3.5878 2.8494 -5.2614 14 7 3.9656 4.1447 -4.9282 15 6 3.8111 4.3860 -3.4707 16 6 4.7329 5.6044 -3.2135 17 6 5.9342 5.3325 -4.1478 18 6 5.3965 4.3725 -5.2251 19 7 3.2256 2.0005 -4.3130 20 6 3.2876 -1.5152 -0.6901 21 6 2.8146 -1.8783 0.7397 22 7 2.0300 -0.7123 1.1850 23 6 1.8050 -0.3519 2.4868 24 1 1.2149 0.5246 2.7101 25 6 2.3362 -1.1127 3.5193 26 7 3.0557 -2.1806 3.2471 27 14 2.0286 -0.6214 5.2951 28 1 1.1959 0.6075 5.3316 29 1 1.3197 -1.7213 5.9973 30 1 3.3263 -0.3598 5.9682 31 1 -0.3633 0.5207 0.8861 32 1 -0.3633 -1.0276 0.0081 33 1 -0.3633 0.5069 -0.8939 34 1 2.7188 1.0958 -2.0511 35 1 2.5829 -0.6456 -6.2339 36 1 3.8843 3.1356 -7.3718 37 1 2.7763 4.6286 -3.2285 38 1 4.1483 3.5210 -2.8997 39 1 5.0531 5.6328 -2.1719 40 1 4.2338 6.5339 -3.4875 41 1 6.7461 4.8622 -3.5931 42 1 6.2772 6.2605 -4.6053 43 1 5.9390 3.4278 -5.1849 44 1 5.5038 4.8236 -6.2115 45 1 4.1655 -0.8698 -0.6590 46 1 3.4852 -2.4129 -1.2760 47 1 3.6716 -2.0317 1.3953 48 1 2.1887 -2.7704 0.7170 49 1 3.4265 -2.7123 3.9685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088900677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:14 Heat of formation + Delta-G solvation = 59.304046 kcal Electronic energy + Delta-G solvation = -30593.434999 eV Core-core repulsion = 26556.764065 eV Total energy + Delta-G solvation = -4036.670934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.78073 -39.76923 -38.91896 -37.55304 -34.86664 -34.00017 -33.19714 -31.95047 -30.40740 -29.78151 -29.47985 -28.66387 -26.05231 -24.82058 -24.13677 -23.97343 -21.90699 -21.42404 -20.76291 -20.22168 -19.80495 -18.19053 -17.98142 -17.04807 -16.80357 -16.64029 -16.42745 -15.89698 -15.42500 -14.78949 -14.48579 -14.22245 -14.17670 -13.95350 -13.70828 -13.45575 -13.16812 -12.99720 -12.83521 -12.80902 -12.18064 -12.06951 -12.02431 -11.85746 -11.60078 -11.57053 -11.44593 -11.16894 -10.97349 -10.89081 -10.88485 -10.64506 -10.56430 -10.25679 -10.22140 -10.08973 -9.79103 -9.61566 -9.40246 -8.81853 -8.70891 -8.64186 -6.90223 -5.68135 -3.11008 0.12648 0.68755 2.59508 2.94481 3.09877 3.37532 3.43162 3.45582 3.51554 3.74014 3.96330 4.08908 4.19397 4.33740 4.46096 4.51255 4.81435 4.84855 4.89592 4.99016 5.04976 5.22172 5.25379 5.38750 5.39424 5.44779 5.50814 5.55311 5.58883 5.64300 5.66648 5.77303 5.83442 6.04214 6.09823 6.20140 6.27721 6.30963 6.47492 6.49978 6.56575 6.66722 6.82382 6.86189 7.05862 7.31074 7.48676 7.60372 7.64127 7.82209 8.19110 8.32361 9.17992 9.78779 10.42379 11.35323 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002827 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.185276 B = 9900.815994 C =11428.396648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.036 0.964 4 C 0.132 3.868 5 H 0.097 0.903 6 N -0.690 5.690 7 C 0.571 3.429 8 O -0.528 6.528 9 C 0.064 3.936 10 C 0.079 3.921 11 N -0.422 5.422 12 C 0.071 3.929 13 C 0.253 3.747 14 N -0.456 5.456 15 C 0.040 3.960 16 C -0.127 4.127 17 C -0.131 4.131 18 C 0.042 3.958 19 N -0.449 5.449 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.220 4.220 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.037 0.963 34 H 0.407 0.593 35 H 0.184 0.816 36 H 0.175 0.825 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.054 0.946 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.110 0.890 48 H 0.016 0.984 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.822 14.152 -18.809 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.054 0.946 4 C 0.027 3.973 5 H 0.115 0.885 6 N -0.339 5.339 7 C 0.354 3.646 8 O -0.404 6.404 9 C -0.078 4.078 10 C -0.079 4.079 11 N -0.135 5.135 12 C -0.094 4.094 13 C 0.016 3.984 14 N -0.176 5.176 15 C -0.086 4.086 16 C -0.165 4.165 17 C -0.169 4.169 18 C -0.084 4.084 19 N -0.171 5.171 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.348 4.348 24 H 0.096 0.904 25 C -0.206 4.206 26 N -0.569 5.569 27 Si 0.744 3.256 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.243 0.757 35 H 0.201 0.799 36 H 0.192 0.808 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.109 0.891 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.127 0.873 48 H 0.034 0.966 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.299 13.586 -19.044 23.785 hybrid contribution 0.238 0.238 1.402 1.442 sum 4.537 13.824 -17.642 22.867 Atomic orbital electron populations 1.22243 0.97794 1.01448 1.00004 1.20982 0.92668 0.94802 0.86779 0.94599 1.22285 0.97945 0.90794 0.86241 0.88468 1.45931 1.65774 1.16778 1.05433 1.17608 0.78559 0.86119 0.82360 1.90808 1.48448 1.19020 1.82173 1.22182 0.99013 0.91386 0.95214 1.23695 0.95133 1.00864 0.88248 1.68557 1.07139 1.02181 1.35650 1.23598 0.97285 0.93827 0.94738 1.21034 0.96476 0.89583 0.91283 1.62138 1.19361 1.16388 1.19689 1.23263 1.01675 0.98259 0.85436 1.22549 0.95488 0.98374 1.00071 1.22422 0.98414 0.99584 0.96446 1.22992 0.84787 0.99708 1.00897 1.68303 1.10605 1.01983 1.36258 1.23420 0.96628 0.99312 0.99912 1.21955 0.97420 0.88419 0.89391 1.44496 1.59249 1.28220 1.00057 1.19070 1.27108 1.08146 0.80465 0.90382 1.24787 1.00355 0.97384 0.98052 1.69798 1.39174 1.17882 1.30042 0.86011 0.77347 0.77560 0.84640 1.20536 1.21753 1.21773 0.92620 0.92864 0.94358 0.75734 0.79913 0.80791 0.89166 0.90624 0.90117 0.90453 0.90808 0.90319 0.92708 0.89071 0.91968 0.91854 0.87264 0.96643 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 2 C 0.16 3.11 3.48 -66.96 -0.23 2.88 16 3 H 0.04 0.71 7.72 -51.93 -0.40 0.31 16 4 C 0.13 2.39 2.84 -66.10 -0.19 2.20 16 5 H 0.10 1.87 7.26 -51.93 -0.38 1.49 16 6 N -0.69 -10.63 5.17 -52.89 -0.27 -10.90 16 7 C 0.57 8.81 7.81 -12.20 -0.10 8.71 16 8 O -0.53 -9.47 15.98 5.35 0.09 -9.38 16 9 C 0.06 0.84 6.75 -82.86 -0.56 0.28 16 10 C 0.08 0.95 10.76 -17.02 -0.18 0.77 16 11 N -0.42 -4.73 10.48 -12.54 -0.13 -4.86 16 12 C 0.07 0.68 10.72 -16.98 -0.18 0.50 16 13 C 0.25 2.62 6.00 -154.90 -0.93 1.69 16 14 N -0.46 -3.94 5.29 -169.08 -0.90 -4.84 16 15 C 0.04 0.35 6.02 -1.89 -0.01 0.34 16 16 C -0.13 -0.82 7.06 -24.87 -0.18 -1.00 16 17 C -0.13 -0.73 6.93 -25.37 -0.18 -0.91 16 18 C 0.04 0.27 6.30 -2.75 -0.02 0.25 16 19 N -0.45 -5.40 7.80 -8.81 -0.07 -5.47 16 20 C -0.15 -3.00 6.77 -24.58 -0.17 -3.17 16 21 C 0.15 3.68 5.89 -2.53 -0.01 3.67 16 22 N -0.60 -14.64 3.13 -162.57 -0.51 -15.15 16 23 C -0.22 -5.90 9.87 -15.06 -0.15 -6.05 16 24 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 25 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 26 N -0.92 -26.35 10.09 55.49 0.56 -25.79 16 27 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H 0.05 1.06 8.03 -51.92 -0.42 0.65 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 5.74 7.72 -40.82 -0.32 5.43 16 35 H 0.18 2.02 7.64 -52.49 -0.40 1.62 16 36 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.76 7.15 -51.93 -0.37 0.39 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.11 2.94 5.87 -51.93 -0.30 2.64 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -30.71 393.54 -10.77 -41.48 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.61 Total: 5.09 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.84 Total: 7.23 kcal Atomic # 7 Polarization: -65.68 SS G_CDS: -1.32 Total: -67.00 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.71 -10.77 -41.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088900677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.786 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds