Wall clock time and date at job start Wed Apr 1 2020 03:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.87346 * 2 1 4 4 C 1.54316 * 109.88350 * 238.82060 * 2 1 3 5 5 H 1.09006 * 110.72247 * 336.75032 * 4 2 1 6 6 N 1.46498 * 110.72413 * 100.02422 * 4 2 1 7 7 C 1.34770 * 120.00353 * 205.00278 * 6 4 2 8 8 O 1.21517 * 120.00257 * 359.97438 * 7 6 4 9 9 C 1.48128 * 119.99983 * 180.02562 * 7 6 4 10 10 C 1.39252 * 120.04656 * 179.72054 * 9 7 6 11 11 N 1.32198 * 120.06114 * 179.77176 * 10 9 7 12 12 C 1.31927 * 120.17054 * 0.48634 * 11 10 9 13 13 C 1.39660 * 120.08817 * 359.76846 * 12 11 10 14 14 N 1.38978 * 120.02842 * 180.02562 * 13 12 11 15 15 C 1.48541 * 110.99947 * 176.49970 * 14 13 12 16 16 C 1.54938 * 103.22375 * 159.71926 * 15 14 13 17 17 C 1.54598 * 102.92515 * 322.58494 * 16 15 14 18 18 C 1.47907 * 111.00024 * 293.89363 * 14 13 12 19 19 N 1.32342 * 119.94214 * 359.97438 * 13 12 11 20 20 C 1.55155 * 102.94477 * 218.39011 * 4 2 1 21 21 C 1.54917 * 101.58243 * 35.49899 * 20 4 2 22 22 N 1.47025 * 109.88180 * 121.01108 * 2 1 3 23 23 C 1.36941 * 125.64743 * 298.32166 * 22 2 1 24 24 H 1.07993 * 119.99976 * 359.97438 * 23 22 2 25 25 C 1.38814 * 119.99620 * 180.02562 * 23 22 2 26 26 N 1.31620 * 120.00250 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 119.99698 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47095 * 359.97438 * 27 25 23 29 29 H 1.48505 * 109.47150 * 120.00014 * 27 25 23 30 30 H 1.48507 * 109.46882 * 239.99810 * 27 25 23 31 31 H 1.09008 * 109.46819 * 300.44316 * 1 2 3 32 32 H 1.09000 * 109.47014 * 180.44890 * 1 2 3 33 33 H 1.08997 * 109.47103 * 60.44133 * 1 2 3 34 34 H 0.97008 * 119.99374 * 25.00308 * 6 4 2 35 35 H 1.07998 * 119.96946 * 0.02562 * 10 9 7 36 36 H 1.08001 * 119.95413 * 179.75269 * 12 11 10 37 37 H 1.09001 * 110.66369 * 278.14957 * 15 14 13 38 38 H 1.08996 * 110.66470 * 41.28115 * 15 14 13 39 39 H 1.09004 * 110.72242 * 204.22332 * 16 15 14 40 40 H 1.09004 * 110.87549 * 81.01533 * 16 15 14 41 41 H 1.09000 * 110.30408 * 263.04169 * 17 16 15 42 42 H 1.08998 * 110.39009 * 140.91716 * 17 16 15 43 43 H 1.09004 * 109.91360 * 333.51015 * 18 14 13 44 44 H 1.08995 * 109.91410 * 94.80270 * 18 14 13 45 45 H 1.09003 * 111.00695 * 277.43043 * 20 4 2 46 46 H 1.08999 * 111.01019 * 153.57153 * 20 4 2 47 47 H 1.08993 * 110.36662 * 204.15559 * 21 20 4 48 48 H 1.09002 * 110.36387 * 81.83023 * 21 20 4 49 49 H 0.96993 * 119.99822 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2415 5 1 1.3051 -1.4483 -1.6161 6 7 2.4554 0.1927 -2.2878 7 6 2.4581 -0.1936 -3.5789 8 8 2.1287 -1.3251 -3.8753 9 6 2.8637 0.7608 -4.6367 10 6 2.8725 0.3609 -5.9705 11 7 3.2301 1.2138 -6.9152 12 6 3.5890 2.4429 -6.5975 13 6 3.5878 2.8494 -5.2614 14 7 3.9656 4.1447 -4.9282 15 6 3.8111 4.3860 -3.4707 16 6 4.7329 5.6044 -3.2135 17 6 5.9342 5.3325 -4.1478 18 6 5.3965 4.3725 -5.2251 19 7 3.2256 2.0005 -4.3130 20 6 3.2876 -1.5152 -0.6901 21 6 2.8146 -1.8783 0.7397 22 7 2.0300 -0.7123 1.1850 23 6 1.8050 -0.3519 2.4868 24 1 1.2149 0.5246 2.7101 25 6 2.3362 -1.1127 3.5193 26 7 3.0557 -2.1806 3.2471 27 14 2.0286 -0.6214 5.2951 28 1 1.1959 0.6075 5.3316 29 1 1.3197 -1.7213 5.9973 30 1 3.3263 -0.3598 5.9682 31 1 -0.3633 0.5207 0.8861 32 1 -0.3633 -1.0276 0.0081 33 1 -0.3633 0.5069 -0.8939 34 1 2.7188 1.0958 -2.0511 35 1 2.5829 -0.6456 -6.2339 36 1 3.8843 3.1356 -7.3718 37 1 2.7763 4.6286 -3.2285 38 1 4.1483 3.5210 -2.8997 39 1 5.0531 5.6328 -2.1719 40 1 4.2338 6.5339 -3.4875 41 1 6.7461 4.8622 -3.5931 42 1 6.2772 6.2605 -4.6053 43 1 5.9390 3.4278 -5.1849 44 1 5.5038 4.8236 -6.2115 45 1 4.1655 -0.8698 -0.6590 46 1 3.4852 -2.4129 -1.2760 47 1 3.6716 -2.0317 1.3953 48 1 2.1887 -2.7704 0.7170 49 1 3.4265 -2.7123 3.9685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088900677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:13 Heat of formation + Delta-G solvation = 39.105000 kcal Electronic energy + Delta-G solvation = -30594.310896 eV Core-core repulsion = 26556.764065 eV Total energy + Delta-G solvation = -4037.546830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.64086 -40.98663 -39.75792 -39.08807 -35.92062 -35.38784 -34.10887 -33.60392 -32.08853 -30.68838 -30.36087 -30.01469 -27.28779 -26.08722 -25.78375 -25.09533 -22.80909 -22.19279 -21.95680 -21.63329 -21.33637 -19.27551 -18.87089 -18.66930 -17.85221 -17.44674 -17.37502 -17.19605 -16.64684 -16.39384 -15.75604 -15.65551 -15.39600 -15.04820 -14.93886 -14.43069 -14.36585 -14.03862 -13.88586 -13.76197 -13.57948 -13.45965 -13.26726 -12.96143 -12.87787 -12.76465 -12.64917 -12.43924 -12.29988 -12.27285 -12.18199 -12.07277 -11.95529 -11.61753 -11.57949 -11.48193 -11.43693 -11.00845 -10.74756 -10.35054 -10.13940 -9.51516 -8.90998 -7.75359 -5.20433 -0.77546 -0.15931 1.48407 1.49055 1.51924 1.59095 1.80588 2.25032 2.50977 2.57297 2.86894 3.12154 3.30837 3.35433 3.52972 3.61851 3.74776 3.80620 3.89868 3.91400 4.00004 4.08609 4.16226 4.27874 4.33145 4.46889 4.54209 4.58831 4.62658 4.66548 4.77368 4.86838 4.88768 4.89533 4.99789 5.00236 5.01816 5.07274 5.15431 5.20112 5.30068 5.45942 5.49408 5.53299 5.59051 5.76313 5.79116 6.03162 6.29822 6.30133 6.55284 6.96432 7.10887 7.77875 8.41307 9.26759 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.002827 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.185276 B = 9900.815994 C =11428.396648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 H 0.047 0.953 4 C 0.149 3.851 5 H 0.089 0.911 6 N -0.684 5.684 7 C 0.575 3.425 8 O -0.556 6.556 9 C 0.047 3.953 10 C 0.079 3.921 11 N -0.431 5.431 12 C 0.089 3.911 13 C 0.251 3.749 14 N -0.454 5.454 15 C 0.036 3.964 16 C -0.123 4.123 17 C -0.127 4.127 18 C 0.039 3.961 19 N -0.459 5.459 20 C -0.138 4.138 21 C 0.158 3.842 22 N -0.613 5.613 23 C -0.226 4.226 24 H 0.085 0.915 25 C -0.068 4.068 26 N -0.950 5.950 27 Si 0.978 3.022 28 H -0.265 1.265 29 H -0.296 1.296 30 H -0.292 1.292 31 H 0.048 0.952 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.415 0.585 35 H 0.186 0.814 36 H 0.210 0.790 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.047 0.953 44 H 0.115 0.885 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.079 0.921 48 H -0.011 1.011 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.141 17.005 -20.612 27.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.065 0.935 4 C 0.044 3.956 5 H 0.107 0.893 6 N -0.333 5.333 7 C 0.360 3.640 8 O -0.434 6.434 9 C -0.094 4.094 10 C -0.079 4.079 11 N -0.144 5.144 12 C -0.078 4.078 13 C 0.012 3.988 14 N -0.173 5.173 15 C -0.091 4.091 16 C -0.161 4.161 17 C -0.165 4.165 18 C -0.086 4.086 19 N -0.181 5.181 20 C -0.178 4.178 21 C 0.033 3.967 22 N -0.338 5.338 23 C -0.355 4.355 24 H 0.103 0.897 25 C -0.260 4.260 26 N -0.600 5.600 27 Si 0.807 3.193 28 H -0.189 1.189 29 H -0.224 1.224 30 H -0.220 1.220 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.203 0.797 36 H 0.227 0.773 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.007 0.993 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.605 16.465 -20.872 26.980 hybrid contribution 0.165 -0.523 1.855 1.935 sum 4.770 15.941 -19.017 25.269 Atomic orbital electron populations 1.22121 0.96420 1.00922 1.01097 1.21157 0.93617 0.94891 0.85813 0.93494 1.21877 0.96722 0.90737 0.86271 0.89264 1.45725 1.65977 1.16593 1.05033 1.17893 0.77528 0.86126 0.82474 1.90790 1.49635 1.20406 1.82609 1.21743 1.01344 0.91644 0.94640 1.23730 0.94955 1.01277 0.87954 1.68642 1.07715 1.02821 1.35233 1.24177 0.94925 0.93520 0.95211 1.21358 0.96025 0.89908 0.91473 1.62228 1.20674 1.14923 1.19492 1.23257 1.01756 0.98628 0.85410 1.22540 0.95437 0.97585 1.00530 1.22441 0.97859 1.00212 0.96028 1.23152 0.83193 0.99790 1.02464 1.68240 1.10982 1.01785 1.37126 1.23220 0.97357 1.00001 0.97225 1.21672 0.95793 0.87837 0.91405 1.44722 1.59732 1.28583 1.00794 1.19420 1.26368 1.08043 0.81677 0.89742 1.25597 1.00798 0.97724 1.01869 1.70039 1.40382 1.18967 1.30618 0.85011 0.77016 0.77422 0.79887 1.18935 1.22359 1.21959 0.93272 0.94166 0.91460 0.74793 0.79680 0.77335 0.89923 0.92266 0.89958 0.89682 0.90922 0.88456 0.93431 0.86660 0.91430 0.91071 0.90356 0.99324 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.31 9.14 71.98 0.66 -4.65 16 2 C 0.15 6.01 3.48 45.34 0.16 6.17 16 3 H 0.05 1.78 7.72 -2.39 -0.02 1.77 16 4 C 0.15 5.39 2.84 46.18 0.13 5.52 16 5 H 0.09 3.42 7.26 -2.38 -0.02 3.41 16 6 N -0.68 -20.58 5.17 -439.53 -2.27 -22.85 16 7 C 0.58 17.48 7.81 86.87 0.68 18.16 16 8 O -0.56 -19.90 15.98 -3.77 -0.06 -19.96 16 9 C 0.05 1.18 6.75 41.82 0.28 1.46 16 10 C 0.08 1.80 10.76 84.88 0.91 2.71 16 11 N -0.43 -8.75 10.48 -193.59 -2.03 -10.78 16 12 C 0.09 1.42 10.72 85.02 0.91 2.33 16 13 C 0.25 4.64 6.00 133.22 0.80 5.43 16 14 N -0.45 -6.70 5.29 -688.86 -3.65 -10.34 16 15 C 0.04 0.57 6.02 86.65 0.52 1.09 16 16 C -0.12 -1.33 7.06 31.80 0.22 -1.10 16 17 C -0.13 -1.07 6.93 31.47 0.22 -0.85 16 18 C 0.04 0.39 6.30 86.44 0.54 0.93 16 19 N -0.46 -10.46 7.80 -181.79 -1.42 -11.88 16 20 C -0.14 -5.49 6.77 31.99 0.22 -5.28 16 21 C 0.16 7.90 5.89 86.86 0.51 8.41 16 22 N -0.61 -30.62 3.13 -668.26 -2.09 -32.71 16 23 C -0.23 -12.26 9.87 84.03 0.83 -11.43 16 24 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 25 C -0.07 -3.77 5.49 84.86 0.47 -3.30 16 26 N -0.95 -56.19 10.09 21.65 0.22 -55.98 16 27 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 29 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 30 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 31 H 0.05 1.83 8.03 -2.38 -0.02 1.81 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.41 11.31 7.72 -92.70 -0.72 10.60 16 35 H 0.19 4.02 7.64 -2.91 -0.02 4.00 16 36 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.14 7.15 -2.39 -0.02 1.12 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.05 0.56 7.75 -2.38 -0.02 0.54 16 44 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 47 H 0.08 4.42 5.87 -2.39 -0.01 4.41 16 48 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 49 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -67.39 393.54 -0.96 -68.34 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.25 Total: 23.44 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 8.06 Total: 25.61 kcal Atomic # 7 Polarization: -133.31 SS G_CDS: -11.24 Total: -144.54 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -67.39 -0.96 -68.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088900677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.449 kcal (2) G-P(sol) polarization free energy of solvation -67.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds