Wall clock time and date at job start Wed Apr 1 2020 03:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.08996 * 110.72159 * 336.75915 * 4 2 1 6 6 N 1.46504 * 110.87059 * 99.95734 * 4 2 1 7 7 C 1.34774 * 119.99811 * 200.06457 * 6 4 2 8 8 O 1.21553 * 120.00252 * 0.02562 * 7 6 4 9 9 C 1.47865 * 119.99797 * 179.97438 * 7 6 4 10 10 C 1.40074 * 120.09289 * 180.02562 * 9 7 6 11 11 C 1.38286 * 117.99011 * 180.02562 * 10 9 7 12 12 C 1.39602 * 118.02713 * 0.02562 * 11 10 9 13 13 N 1.38509 * 120.04411 * 180.02562 * 12 11 10 14 14 C 1.48539 * 110.99996 * 62.60479 * 13 12 11 15 15 C 1.54933 * 103.22521 * 159.72066 * 14 13 12 16 16 C 1.54600 * 102.92379 * 322.58430 * 15 14 13 17 17 C 1.47903 * 110.99982 * 179.97438 * 13 12 11 18 18 N 1.32857 * 119.90670 * 359.97438 * 12 11 10 19 19 N 1.28356 * 122.15833 * 359.71030 * 18 12 11 20 20 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 21 21 C 1.54912 * 101.57968 * 35.50272 * 20 4 2 22 22 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 23 23 C 1.36941 * 125.64618 * 298.62174 * 22 2 1 24 24 H 1.08001 * 120.00063 * 359.71616 * 23 22 2 25 25 C 1.38810 * 119.99930 * 179.71580 * 23 22 2 26 26 N 1.31617 * 120.00219 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00125 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47105 * 89.99764 * 27 25 23 29 29 H 1.48498 * 109.47318 * 210.00148 * 27 25 23 30 30 H 1.48496 * 109.46962 * 329.99931 * 27 25 23 31 31 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 32 32 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 33 33 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 34 34 H 0.96999 * 119.99843 * 20.06564 * 6 4 2 35 35 H 1.07994 * 121.00310 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.98454 * 180.02562 * 11 10 9 37 37 H 1.09005 * 110.66154 * 278.15500 * 14 13 12 38 38 H 1.08998 * 110.66634 * 41.28539 * 14 13 12 39 39 H 1.09002 * 110.72132 * 204.22931 * 15 14 13 40 40 H 1.08995 * 110.72712 * 80.94063 * 15 14 13 41 41 H 1.09001 * 110.31127 * 263.04536 * 16 15 14 42 42 H 1.08997 * 110.30995 * 140.87269 * 16 15 14 43 43 H 1.09000 * 109.91663 * 333.50965 * 17 13 12 44 44 H 1.08999 * 109.91807 * 94.80184 * 17 13 12 45 45 H 1.08997 * 111.00368 * 277.43464 * 20 4 2 46 46 H 1.08992 * 111.03872 * 153.58929 * 20 4 2 47 47 H 1.09002 * 110.36496 * 204.15483 * 21 20 4 48 48 H 1.08997 * 110.36790 * 81.83118 * 21 20 4 49 49 H 0.97004 * 120.00482 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4550 0.1929 -2.2904 7 6 2.5531 -0.2224 -3.5688 8 8 2.3091 -1.3789 -3.8526 9 6 2.9564 0.7290 -4.6264 10 6 3.0584 0.2996 -5.9558 11 6 3.4396 1.2256 -6.9095 12 6 3.6998 2.5311 -6.4891 13 7 4.0840 3.4924 -7.4093 14 6 3.0156 3.7236 -8.4150 15 6 3.3664 5.1187 -8.9904 16 6 3.8736 5.8873 -7.7486 17 6 4.3062 4.7978 -6.7505 18 7 3.5775 2.8504 -5.2052 19 7 3.2180 1.9938 -4.3195 20 6 3.2877 -1.5143 -0.6923 21 6 2.8145 -1.8794 0.7369 22 7 2.0300 -0.7141 1.1840 23 6 1.8001 -0.3588 2.4863 24 1 1.2092 0.5169 2.7110 25 6 2.3264 -1.1242 3.5178 26 7 3.0469 -2.1911 3.2441 27 14 2.0123 -0.6401 5.2944 28 1 0.7698 -1.2968 5.7741 29 1 3.1572 -1.0726 6.1353 30 1 1.8600 0.8342 5.3861 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3633 -1.0276 0.0064 34 1 2.6494 1.1159 -2.0641 35 1 2.8466 -0.7239 -6.2275 36 1 3.5332 0.9470 -7.9487 37 1 3.0524 2.9647 -9.1966 38 1 2.0355 3.7393 -7.9384 39 1 2.4801 5.5986 -9.4056 40 1 4.1516 5.0396 -9.7422 41 1 3.0719 6.4918 -7.3243 42 1 4.7231 6.5166 -8.0140 43 1 3.7040 4.8638 -5.8444 44 1 5.3621 4.9160 -6.5071 45 1 4.1654 -0.8689 -0.6602 46 1 3.4859 -2.4111 -1.2792 47 1 3.6716 -2.0338 1.3924 48 1 2.1886 -2.7715 0.7130 49 1 3.4145 -2.7263 3.9649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088972359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:58 Heat of formation + Delta-G solvation = 69.863816 kcal Electronic energy + Delta-G solvation = -29852.302017 eV Core-core repulsion = 25816.088989 eV Total energy + Delta-G solvation = -4036.213028 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70583 -39.85478 -38.94257 -37.51612 -34.30880 -33.80806 -33.41653 -32.02794 -30.45014 -30.18728 -29.57718 -28.52646 -25.69195 -24.97005 -24.20945 -23.95695 -22.10223 -21.37232 -21.06402 -20.13910 -19.84389 -18.29424 -17.91180 -17.43902 -16.75288 -16.44594 -15.90559 -15.62594 -14.88307 -14.80404 -14.71504 -14.46880 -14.24772 -13.96668 -13.73472 -13.61650 -13.30733 -13.17096 -12.78164 -12.73643 -12.15589 -12.11125 -11.99693 -11.86840 -11.66127 -11.54954 -11.12816 -11.09594 -10.88577 -10.84881 -10.82345 -10.57804 -10.52041 -10.45727 -10.08842 -10.04613 -9.91373 -9.73371 -9.55069 -8.95498 -8.68156 -8.60675 -6.85694 -5.63761 -3.06360 0.19376 0.46333 2.49171 2.93484 3.13305 3.41386 3.46147 3.47375 3.48294 3.70967 3.95730 4.06875 4.24993 4.36881 4.41711 4.51018 4.56005 4.72769 4.75042 4.88475 5.05327 5.14914 5.24939 5.26858 5.34866 5.41150 5.43608 5.44255 5.51917 5.55239 5.64443 5.68152 5.72088 5.82531 6.07646 6.14833 6.25695 6.31976 6.35126 6.41479 6.53419 6.61655 6.72657 6.87200 7.10362 7.52733 7.63896 7.64461 7.86828 8.19570 8.30747 8.36921 9.22344 9.83189 10.46984 11.39790 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.002050 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.362131 B =13657.782884 C =14350.582018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.039 0.961 4 C 0.133 3.867 5 H 0.094 0.906 6 N -0.691 5.691 7 C 0.575 3.425 8 O -0.533 6.533 9 C 0.008 3.992 10 C -0.045 4.045 11 C -0.133 4.133 12 C 0.257 3.743 13 N -0.456 5.456 14 C 0.041 3.959 15 C -0.123 4.123 16 C -0.133 4.133 17 C 0.030 3.970 18 N -0.278 5.278 19 N -0.185 5.185 20 C -0.153 4.153 21 C 0.153 3.847 22 N -0.595 5.595 23 C -0.219 4.219 24 H 0.078 0.922 25 C -0.011 4.011 26 N -0.921 5.921 27 Si 0.914 3.086 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.038 0.962 33 H 0.052 0.948 34 H 0.409 0.591 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.109 0.891 48 H 0.015 0.985 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 12.535 -26.837 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.056 0.944 4 C 0.029 3.971 5 H 0.112 0.888 6 N -0.340 5.340 7 C 0.357 3.643 8 O -0.409 6.409 9 C -0.141 4.141 10 C -0.074 4.074 11 C -0.164 4.164 12 C 0.020 3.980 13 N -0.174 5.174 14 C -0.084 4.084 15 C -0.161 4.161 16 C -0.171 4.171 17 C -0.096 4.096 18 N -0.127 5.127 19 N -0.031 5.031 20 C -0.193 4.193 21 C 0.028 3.972 22 N -0.320 5.320 23 C -0.347 4.347 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.569 5.569 27 Si 0.745 3.255 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.183 0.817 36 H 0.175 0.825 37 H 0.112 0.888 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.127 0.873 48 H 0.033 0.967 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.174 12.629 -25.882 28.823 hybrid contribution -0.696 -0.260 0.230 0.778 sum 0.478 12.369 -25.652 28.482 Atomic orbital electron populations 1.22243 0.97800 1.01396 1.00054 1.20989 0.92626 0.94960 0.86730 0.94354 1.22260 0.97868 0.90750 0.86231 0.88781 1.45958 1.66823 1.14886 1.06365 1.17409 0.78269 0.86366 0.82215 1.90803 1.50471 1.17494 1.82146 1.22842 1.02231 0.94118 0.94904 1.22339 0.91917 1.01886 0.91262 1.21921 1.00680 0.91666 1.02138 1.21682 0.91112 0.93145 0.92060 1.61699 1.36656 1.07492 1.11585 1.23403 0.92025 0.98978 0.94036 1.22520 1.01897 0.93784 0.97931 1.22455 1.01744 0.97703 0.95214 1.23001 1.03612 0.85333 0.97693 1.73304 1.13858 1.26116 0.99384 1.73072 1.04160 0.99700 1.26209 1.23415 0.96679 0.99361 0.99817 1.21950 0.97385 0.88385 0.89440 1.44490 1.59183 1.28293 1.00036 1.19024 1.27127 1.08099 0.80455 0.90420 1.24791 1.00407 0.97426 0.98055 1.69796 1.39192 1.17811 1.30149 0.86074 0.77213 0.77723 0.84489 1.21684 1.21699 1.20709 0.92588 0.94318 0.92903 0.75501 0.81704 0.82533 0.88786 0.92278 0.90141 0.90133 0.90840 0.90392 0.89612 0.89396 0.91857 0.91826 0.87305 0.96684 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.14 37.16 0.34 -2.58 16 2 C 0.16 3.17 3.48 -66.95 -0.23 2.94 16 3 H 0.04 0.78 7.70 -51.93 -0.40 0.38 16 4 C 0.13 2.48 2.76 -66.09 -0.18 2.30 16 5 H 0.09 1.82 7.40 -51.93 -0.38 1.44 16 6 N -0.69 -11.09 5.20 -52.96 -0.28 -11.36 16 7 C 0.58 9.07 7.80 -12.32 -0.10 8.97 16 8 O -0.53 -9.62 16.11 5.32 0.09 -9.53 16 9 C 0.01 0.11 6.83 -82.84 -0.57 -0.46 16 10 C -0.04 -0.47 9.71 -38.88 -0.38 -0.84 16 11 C -0.13 -1.15 9.57 -39.06 -0.37 -1.52 16 12 C 0.26 2.62 6.27 -154.93 -0.97 1.65 16 13 N -0.46 -3.72 5.29 -169.14 -0.90 -4.62 16 14 C 0.04 0.23 6.06 -1.90 -0.01 0.21 16 15 C -0.12 -0.52 7.06 -24.87 -0.18 -0.69 16 16 C -0.13 -0.68 6.93 -25.39 -0.18 -0.86 16 17 C 0.03 0.23 6.35 -2.77 -0.02 0.22 16 18 N -0.28 -3.50 9.32 31.21 0.29 -3.21 16 19 N -0.19 -2.55 10.73 33.32 0.36 -2.19 16 20 C -0.15 -3.10 6.77 -24.58 -0.17 -3.26 16 21 C 0.15 3.76 5.88 -2.53 -0.01 3.75 16 22 N -0.59 -14.94 3.13 -162.56 -0.51 -15.45 16 23 C -0.22 -5.98 9.86 -15.06 -0.15 -6.13 16 24 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 25 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 26 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 27 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.06 1.08 8.02 -51.93 -0.42 0.66 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.41 6.12 7.67 -40.82 -0.31 5.81 16 35 H 0.17 1.48 7.71 -52.49 -0.40 1.07 16 36 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.36 7.99 -51.93 -0.42 -0.06 16 39 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.09 0.80 6.50 -51.93 -0.34 0.46 16 44 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.11 2.99 5.89 -51.93 -0.31 2.68 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -31.99 393.34 -10.34 -42.33 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -7.60 Total: 4.00 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -3.27 Total: 3.28 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.47 Total: -63.04 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.99 -10.34 -42.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088972359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.194 kcal (2) G-P(sol) polarization free energy of solvation -31.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds