Wall clock time and date at job start Wed Apr 1 2020 03:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.00066 * 2 1 4 4 C 1.54327 * 109.88475 * 238.89941 * 2 1 3 5 5 H 1.08996 * 110.72159 * 336.75915 * 4 2 1 6 6 N 1.46504 * 110.87059 * 99.95734 * 4 2 1 7 7 C 1.34774 * 119.99811 * 200.06457 * 6 4 2 8 8 O 1.21553 * 120.00252 * 0.02562 * 7 6 4 9 9 C 1.47865 * 119.99797 * 179.97438 * 7 6 4 10 10 C 1.40074 * 120.09289 * 180.02562 * 9 7 6 11 11 C 1.38286 * 117.99011 * 180.02562 * 10 9 7 12 12 C 1.39602 * 118.02713 * 0.02562 * 11 10 9 13 13 N 1.38509 * 120.04411 * 180.02562 * 12 11 10 14 14 C 1.48539 * 110.99996 * 62.60479 * 13 12 11 15 15 C 1.54933 * 103.22521 * 159.72066 * 14 13 12 16 16 C 1.54600 * 102.92379 * 322.58430 * 15 14 13 17 17 C 1.47903 * 110.99982 * 179.97438 * 13 12 11 18 18 N 1.32857 * 119.90670 * 359.97438 * 12 11 10 19 19 N 1.28356 * 122.15833 * 359.71030 * 18 12 11 20 20 C 1.55155 * 102.94571 * 218.39122 * 4 2 1 21 21 C 1.54912 * 101.57968 * 35.50272 * 20 4 2 22 22 N 1.47024 * 109.88112 * 121.09472 * 2 1 3 23 23 C 1.36941 * 125.64618 * 298.62174 * 22 2 1 24 24 H 1.08001 * 120.00063 * 359.71616 * 23 22 2 25 25 C 1.38810 * 119.99930 * 179.71580 * 23 22 2 26 26 N 1.31617 * 120.00219 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 120.00125 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47105 * 89.99764 * 27 25 23 29 29 H 1.48498 * 109.47318 * 210.00148 * 27 25 23 30 30 H 1.48496 * 109.46962 * 329.99931 * 27 25 23 31 31 H 1.08993 * 109.46793 * 300.36247 * 1 2 3 32 32 H 1.09005 * 109.46593 * 60.35810 * 1 2 3 33 33 H 1.08995 * 109.46984 * 180.35793 * 1 2 3 34 34 H 0.96999 * 119.99843 * 20.06564 * 6 4 2 35 35 H 1.07994 * 121.00310 * 359.97438 * 10 9 7 36 36 H 1.07997 * 120.98454 * 180.02562 * 11 10 9 37 37 H 1.09005 * 110.66154 * 278.15500 * 14 13 12 38 38 H 1.08998 * 110.66634 * 41.28539 * 14 13 12 39 39 H 1.09002 * 110.72132 * 204.22931 * 15 14 13 40 40 H 1.08995 * 110.72712 * 80.94063 * 15 14 13 41 41 H 1.09001 * 110.31127 * 263.04536 * 16 15 14 42 42 H 1.08997 * 110.30995 * 140.87269 * 16 15 14 43 43 H 1.09000 * 109.91663 * 333.50965 * 17 13 12 44 44 H 1.08999 * 109.91807 * 94.80184 * 17 13 12 45 45 H 1.08997 * 111.00368 * 277.43464 * 20 4 2 46 46 H 1.08992 * 111.03872 * 153.58929 * 20 4 2 47 47 H 1.09002 * 110.36496 * 204.15483 * 21 20 4 48 48 H 1.08997 * 110.36790 * 81.83118 * 21 20 4 49 49 H 0.97004 * 120.00482 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7496 -1.2427 5 1 1.3052 -1.4460 -1.6182 6 7 2.4550 0.1929 -2.2904 7 6 2.5531 -0.2224 -3.5688 8 8 2.3091 -1.3789 -3.8526 9 6 2.9564 0.7290 -4.6264 10 6 3.0584 0.2996 -5.9558 11 6 3.4396 1.2256 -6.9095 12 6 3.6998 2.5311 -6.4891 13 7 4.0840 3.4924 -7.4093 14 6 3.0156 3.7236 -8.4150 15 6 3.3664 5.1187 -8.9904 16 6 3.8736 5.8873 -7.7486 17 6 4.3062 4.7978 -6.7505 18 7 3.5775 2.8504 -5.2052 19 7 3.2180 1.9938 -4.3195 20 6 3.2877 -1.5143 -0.6923 21 6 2.8145 -1.8794 0.7369 22 7 2.0300 -0.7141 1.1840 23 6 1.8001 -0.3588 2.4863 24 1 1.2092 0.5169 2.7110 25 6 2.3264 -1.1242 3.5178 26 7 3.0469 -2.1911 3.2441 27 14 2.0123 -0.6401 5.2944 28 1 0.7698 -1.2968 5.7741 29 1 3.1572 -1.0726 6.1353 30 1 1.8600 0.8342 5.3861 31 1 -0.3633 0.5194 0.8867 32 1 -0.3633 0.5083 -0.8932 33 1 -0.3633 -1.0276 0.0064 34 1 2.6494 1.1159 -2.0641 35 1 2.8466 -0.7239 -6.2275 36 1 3.5332 0.9470 -7.9487 37 1 3.0524 2.9647 -9.1966 38 1 2.0355 3.7393 -7.9384 39 1 2.4801 5.5986 -9.4056 40 1 4.1516 5.0396 -9.7422 41 1 3.0719 6.4918 -7.3243 42 1 4.7231 6.5166 -8.0140 43 1 3.7040 4.8638 -5.8444 44 1 5.3621 4.9160 -6.5071 45 1 4.1654 -0.8689 -0.6602 46 1 3.4859 -2.4111 -1.2792 47 1 3.6716 -2.0338 1.3924 48 1 2.1886 -2.7715 0.7130 49 1 3.4145 -2.7263 3.9649 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088972359.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:56 Heat of formation + Delta-G solvation = 48.846379 kcal Electronic energy + Delta-G solvation = -29853.213402 eV Core-core repulsion = 25816.088989 eV Total energy + Delta-G solvation = -4037.124412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54272 -41.02691 -39.80411 -39.07640 -35.74316 -34.71166 -34.26763 -33.77790 -32.08514 -31.19248 -30.23487 -30.05488 -26.98547 -26.01320 -25.80863 -25.25467 -22.85254 -22.33391 -21.90249 -21.61308 -21.50804 -19.38703 -18.72954 -18.58565 -18.36088 -17.42670 -17.01219 -16.66939 -16.48203 -15.93064 -15.80402 -15.65365 -15.44013 -15.19942 -14.96941 -14.56140 -14.32963 -14.16956 -14.00496 -13.77266 -13.69045 -13.28955 -13.24679 -12.94443 -12.92485 -12.75957 -12.61699 -12.28778 -12.24718 -12.15847 -12.11361 -11.97832 -11.62979 -11.58094 -11.50427 -11.47219 -11.37171 -11.21974 -10.87358 -10.72946 -10.13996 -9.62550 -8.89927 -7.74542 -5.19362 -0.68840 -0.32253 1.45822 1.48399 1.50008 1.58458 1.84838 2.25782 2.49225 2.52999 2.85494 3.23314 3.35897 3.50026 3.54851 3.64442 3.70087 3.81047 3.86302 3.87691 3.93427 4.09771 4.17759 4.27422 4.36614 4.48861 4.49269 4.59741 4.63351 4.66982 4.69430 4.79938 4.85400 4.86608 4.91872 4.96276 5.03184 5.05868 5.09353 5.13927 5.22835 5.32379 5.50057 5.53513 5.56312 5.60279 5.73777 5.80159 6.30672 6.35237 6.96541 7.11610 7.40336 7.78768 8.42369 9.27548 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.002050 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.362131 B =13657.782884 C =14350.582018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.150 3.850 3 H 0.047 0.953 4 C 0.151 3.849 5 H 0.090 0.910 6 N -0.688 5.688 7 C 0.580 3.420 8 O -0.558 6.558 9 C -0.009 4.009 10 C -0.045 4.045 11 C -0.115 4.115 12 C 0.256 3.744 13 N -0.456 5.456 14 C 0.037 3.963 15 C -0.117 4.117 16 C -0.130 4.130 17 C 0.026 3.974 18 N -0.302 5.302 19 N -0.205 5.205 20 C -0.139 4.139 21 C 0.158 3.842 22 N -0.613 5.613 23 C -0.226 4.226 24 H 0.084 0.916 25 C -0.070 4.070 26 N -0.950 5.950 27 Si 0.979 3.021 28 H -0.289 1.289 29 H -0.296 1.296 30 H -0.268 1.268 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.415 0.585 35 H 0.180 0.820 36 H 0.197 0.803 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.077 0.923 48 H -0.009 1.009 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.267 14.235 -29.800 33.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.043 3.957 3 H 0.064 0.936 4 C 0.046 3.954 5 H 0.108 0.892 6 N -0.338 5.338 7 C 0.364 3.636 8 O -0.435 6.435 9 C -0.159 4.159 10 C -0.073 4.073 11 C -0.146 4.146 12 C 0.019 3.981 13 N -0.175 5.175 14 C -0.088 4.088 15 C -0.155 4.155 16 C -0.168 4.168 17 C -0.101 4.101 18 N -0.151 5.151 19 N -0.051 5.051 20 C -0.179 4.179 21 C 0.033 3.967 22 N -0.339 5.339 23 C -0.355 4.355 24 H 0.102 0.898 25 C -0.262 4.262 26 N -0.600 5.600 27 Si 0.808 3.192 28 H -0.216 1.216 29 H -0.223 1.223 30 H -0.193 1.193 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.252 0.748 35 H 0.197 0.803 36 H 0.214 0.786 37 H 0.134 0.866 38 H 0.072 0.928 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.009 0.991 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.718 14.384 -28.891 32.282 hybrid contribution -0.516 -0.697 1.001 1.324 sum 0.202 13.688 -27.891 31.069 Atomic orbital electron populations 1.22116 0.96175 1.01010 1.01221 1.21177 0.93787 0.94908 0.85821 0.93572 1.21862 0.96623 0.90677 0.86234 0.89189 1.45793 1.67153 1.14667 1.06149 1.17701 0.77211 0.86436 0.82264 1.90785 1.51509 1.18682 1.82544 1.22552 1.04209 0.93848 0.95273 1.22519 0.91650 1.02932 0.90241 1.22290 0.98493 0.90276 1.03536 1.22040 0.89996 0.94450 0.91645 1.61788 1.37150 1.07239 1.11314 1.23599 0.90890 1.00597 0.93667 1.22549 1.02820 0.92735 0.97419 1.22454 1.02260 0.97058 0.95027 1.23016 1.02919 0.86257 0.97878 1.73262 1.15110 1.26091 1.00600 1.72996 1.04874 0.99963 1.27241 1.23215 0.97372 1.00023 0.97242 1.21671 0.95775 0.87873 0.91382 1.44722 1.59690 1.28672 1.00782 1.19382 1.26402 1.08019 0.81683 0.89771 1.25623 1.00866 0.97788 1.01961 1.70041 1.40394 1.18870 1.30713 0.85059 0.76543 0.77948 0.79667 1.21591 1.22257 1.19316 0.93295 0.91230 0.94019 0.74758 0.80265 0.78634 0.86562 0.92773 0.88531 0.89304 0.90595 0.89423 0.91552 0.90062 0.91677 0.90969 0.90472 0.99146 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.14 71.98 0.66 -4.70 16 2 C 0.15 6.10 3.48 45.34 0.16 6.25 16 3 H 0.05 1.83 7.70 -2.39 -0.02 1.81 16 4 C 0.15 5.59 2.76 46.18 0.13 5.72 16 5 H 0.09 3.45 7.40 -2.39 -0.02 3.44 16 6 N -0.69 -21.64 5.20 -439.76 -2.29 -23.93 16 7 C 0.58 17.86 7.80 86.79 0.68 18.53 16 8 O -0.56 -19.69 16.11 -3.88 -0.06 -19.75 16 9 C -0.01 -0.24 6.83 42.00 0.29 0.05 16 10 C -0.04 -0.84 9.71 22.73 0.22 -0.62 16 11 C -0.12 -1.64 9.57 22.61 0.22 -1.42 16 12 C 0.26 4.73 6.27 133.21 0.84 5.57 16 13 N -0.46 -6.42 5.29 -689.02 -3.65 -10.07 16 14 C 0.04 0.29 6.06 86.65 0.53 0.82 16 15 C -0.12 -0.61 7.06 31.80 0.22 -0.39 16 16 C -0.13 -1.06 6.93 31.46 0.22 -0.84 16 17 C 0.03 0.37 6.35 86.43 0.55 0.92 16 18 N -0.30 -7.39 9.32 -55.16 -0.51 -7.91 16 19 N -0.20 -5.53 10.73 -48.50 -0.52 -6.05 16 20 C -0.14 -5.69 6.77 31.99 0.22 -5.47 16 21 C 0.16 8.07 5.88 86.86 0.51 8.58 16 22 N -0.61 -31.35 3.13 -668.23 -2.09 -33.45 16 23 C -0.23 -12.50 9.86 84.03 0.83 -11.67 16 24 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 25 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 26 N -0.95 -57.13 10.09 21.65 0.22 -56.91 16 27 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 28 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 30 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 31 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 32 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.42 12.18 7.67 -92.71 -0.71 11.47 16 35 H 0.18 2.78 7.71 -2.91 -0.02 2.76 16 36 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.05 0.51 7.99 -2.39 -0.02 0.49 16 39 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 1.23 6.50 -2.39 -0.02 1.21 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 46 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 47 H 0.08 4.44 5.89 -2.39 -0.01 4.43 16 48 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 49 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -71.10 393.34 0.10 -71.01 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.25 Total: 21.24 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 6.72 Total: 17.80 kcal Atomic # 7 Polarization: -129.47 SS G_CDS: -8.84 Total: -138.31 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -0.06 Total: -19.75 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -71.10 0.10 -71.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088972359.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.853 kcal (2) G-P(sol) polarization free energy of solvation -71.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds