Wall clock time and date at job start Wed Apr 1 2020 03:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46500 * 109.47185 * 124.99974 * 3 2 1 5 5 C 1.34813 * 126.59554 * 125.00045 * 4 3 2 6 6 C 1.36593 * 106.84090 * 179.97438 * 5 4 3 7 7 C 1.47518 * 125.77137 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00051 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99890 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.53359 * 111.22912 * 297.63152 * 11 10 9 13 13 C 1.55538 * 105.83359 * 241.97347 * 12 11 10 14 14 C 1.54674 * 104.35468 * 334.35422 * 13 12 11 15 15 C 1.54573 * 111.31663 * 177.45313 * 11 10 9 16 16 H 1.09003 * 111.92262 * 18.71664 * 15 11 10 17 17 N 1.46894 * 107.36998 * 255.62092 * 15 11 10 18 18 C 1.36934 * 125.25220 * 181.65786 * 17 15 11 19 19 H 1.08005 * 119.99922 * 359.97302 * 18 17 15 20 20 C 1.38812 * 120.00037 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99902 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47171 * 89.99938 * 22 20 18 24 24 H 1.48499 * 109.46935 * 210.00171 * 22 20 18 25 25 H 1.48504 * 109.47178 * 330.00204 * 22 20 18 26 26 C 1.46741 * 109.49836 * 1.65548 * 17 15 11 27 27 C 1.53864 * 111.25751 * 61.01479 * 11 10 9 28 28 N 1.34399 * 108.45968 * 359.97438 * 6 5 4 29 29 N 1.28761 * 109.52212 * 359.75173 * 28 6 5 30 30 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 33 33 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 34 34 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 35 35 H 1.08007 * 126.57702 * 359.97438 * 5 4 3 36 36 H 0.96999 * 119.99841 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47581 * 300.00083 * 10 9 7 38 38 H 1.08999 * 109.47348 * 60.00441 * 10 9 7 39 39 H 1.08998 * 110.05337 * 1.97779 * 12 11 10 40 40 H 1.08998 * 110.05877 * 123.47764 * 12 11 10 41 41 H 1.09007 * 110.53932 * 215.54238 * 13 12 11 42 42 H 1.09000 * 110.23737 * 93.01890 * 13 12 11 43 43 H 1.09001 * 110.61567 * 278.65427 * 14 13 12 44 44 H 1.09001 * 110.74886 * 155.72715 * 14 13 12 45 45 H 0.97005 * 119.99886 * 179.97438 * 21 20 18 46 46 H 1.08991 * 110.04527 * 221.97139 * 26 17 15 47 47 H 1.08997 * 110.07988 * 100.53252 * 26 17 15 48 48 H 1.09002 * 110.57418 * 212.50906 * 27 11 10 49 49 H 1.08994 * 110.57767 * 335.39244 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3230 1.5498 1.0741 6 6 4.7899 1.4873 2.3562 7 6 6.1937 1.6670 2.7724 8 8 7.0505 1.8933 1.9397 9 7 6.5265 1.5813 4.0756 10 6 7.9207 1.7592 4.4888 11 6 8.0248 1.6135 6.0083 12 6 7.2112 2.6966 6.7271 13 6 8.2395 3.5234 7.5506 14 6 9.4071 2.5409 7.8033 15 6 9.4905 1.7308 6.4850 16 1 10.1244 2.2087 5.7380 17 7 9.9557 0.3760 6.8102 18 6 11.1956 0.0623 7.2995 19 1 11.9206 0.8435 7.4745 20 6 11.5207 -1.2598 7.5704 21 7 10.6374 -2.2117 7.3565 22 14 13.2124 -1.6878 8.2370 23 1 13.1835 -1.6506 9.7213 24 1 13.5933 -3.0495 7.7833 25 1 14.2054 -0.7035 7.7365 26 6 8.8867 -0.5894 6.5301 27 6 7.5743 0.2155 6.4668 28 7 3.7540 1.2354 3.1746 29 7 2.6719 1.1427 2.4829 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 0.0044 33 1 2.6213 1.4026 -0.9314 34 1 1.3586 2.1316 0.0896 35 1 4.9066 1.7377 0.1849 36 1 5.8430 1.4011 4.7399 37 1 8.5415 1.0030 4.0083 38 1 8.2632 2.7512 4.1943 39 1 6.6991 3.3248 5.9982 40 1 6.4869 2.2361 7.3989 41 1 7.8017 3.8469 8.4950 42 1 8.5816 4.3824 6.9733 43 1 9.1812 1.8843 8.6435 44 1 10.3363 3.0826 7.9802 45 1 10.8648 -3.1357 7.5455 46 1 8.8329 -1.3294 7.3285 47 1 9.0687 -1.0828 5.5754 48 1 7.1087 0.2668 7.4510 49 1 6.8903 -0.2238 5.7408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094531440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:23 Heat of formation + Delta-G solvation = 106.521924 kcal Electronic energy + Delta-G solvation = -30210.521701 eV Core-core repulsion = 26175.898288 eV Total energy + Delta-G solvation = -4034.623413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.40277 -39.87774 -38.66989 -36.41453 -34.72054 -33.90496 -33.15893 -31.70330 -31.12075 -30.17887 -28.03446 -27.32226 -26.62278 -24.77017 -23.78530 -23.11610 -22.56113 -21.01509 -20.44976 -19.98790 -19.70162 -18.70890 -17.85712 -16.90892 -16.36030 -16.32333 -15.76180 -15.70682 -15.13948 -14.85481 -14.76266 -14.68371 -14.25507 -13.96497 -13.70105 -13.45633 -13.03513 -12.97172 -12.79274 -12.45269 -12.35218 -12.05408 -11.76967 -11.55992 -11.42517 -11.21393 -11.06326 -10.77431 -10.71407 -10.68114 -10.58258 -10.24405 -10.18760 -10.15456 -10.05232 -9.80198 -9.77352 -9.53213 -9.49319 -9.39021 -8.79509 -8.53774 -6.75308 -5.59924 -2.98683 0.90182 1.26332 1.61023 2.06841 3.23607 3.32865 3.44025 3.49269 3.51064 3.93127 4.03537 4.14594 4.41490 4.54092 4.56483 4.77134 4.81975 4.99803 5.07426 5.07813 5.11345 5.23583 5.54252 5.56973 5.63973 5.64646 5.82962 5.89168 5.92332 5.92603 5.95902 6.09373 6.11290 6.15761 6.16249 6.25742 6.39195 6.45849 6.52206 6.55849 6.68582 6.78513 6.84621 6.93135 7.18889 7.54339 7.63182 7.74597 7.82288 7.94081 8.27547 8.42009 9.30609 9.91833 10.55580 11.45576 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.002268 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.828107 B =12344.081704 C =13061.807950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.182 4.182 3 C 0.152 3.848 4 N -0.361 5.361 5 C 0.091 3.909 6 C -0.097 4.097 7 C 0.600 3.400 8 O -0.543 6.543 9 N -0.705 5.705 10 C 0.141 3.859 11 C -0.082 4.082 12 C -0.111 4.111 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.047 0.953 17 N -0.596 5.596 18 C -0.218 4.218 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.163 3.837 27 C -0.134 4.134 28 N -0.204 5.204 29 N -0.060 5.060 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.205 0.795 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.054 0.946 45 H 0.250 0.750 46 H 0.092 0.908 47 H 0.012 0.988 48 H 0.061 0.939 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.936 9.223 -14.145 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.201 4.201 3 C 0.031 3.969 4 N -0.147 5.147 5 C -0.066 4.066 6 C -0.236 4.236 7 C 0.384 3.616 8 O -0.419 6.419 9 N -0.355 5.355 10 C 0.018 3.982 11 C -0.083 4.083 12 C -0.149 4.149 13 C -0.160 4.160 14 C -0.170 4.170 15 C 0.065 3.935 16 H 0.065 0.935 17 N -0.320 5.320 18 C -0.346 4.346 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C 0.038 3.962 27 C -0.172 4.172 28 N -0.078 5.078 29 N -0.040 5.040 30 H 0.127 0.873 31 H 0.121 0.879 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.222 0.778 36 H 0.244 0.756 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.110 0.890 47 H 0.030 0.970 48 H 0.080 0.920 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.306 8.892 -13.710 26.064 hybrid contribution 1.214 -0.272 -0.257 1.270 sum -19.092 8.620 -13.967 25.177 Atomic orbital electron populations 1.24003 0.95458 1.02866 0.96245 1.22881 0.96397 0.97425 1.03402 1.21103 0.91939 0.98209 0.85624 1.50546 1.06633 1.48388 1.09084 1.23407 0.84570 0.97845 1.00746 1.21557 0.95567 1.15984 0.90512 1.16739 0.84734 0.77144 0.83017 1.90814 1.49277 1.50115 1.51740 1.45861 1.11328 1.71024 1.07272 1.21417 0.80736 1.01791 0.94281 1.21871 0.97426 0.96549 0.92419 1.22384 0.97479 0.96697 0.98371 1.22519 0.96650 0.97957 0.98870 1.22988 0.96438 0.97269 1.00309 1.21521 0.90354 0.88030 0.93572 0.93499 1.44340 1.12257 1.00075 1.75304 1.19030 0.88790 0.92163 1.34663 0.90554 1.24777 0.98185 0.95711 1.02052 1.69892 1.33114 0.99524 1.54515 0.86124 0.83636 0.77469 0.78585 1.21731 1.21805 1.20793 1.21432 0.82687 0.91678 1.00382 1.22805 1.00238 0.94431 0.99764 1.74667 0.96426 1.09753 1.26943 1.82015 1.16884 1.21843 0.83264 0.87332 0.87898 0.86351 0.86803 0.88014 0.77842 0.75618 0.90660 0.91418 0.92180 0.91691 0.92548 0.92437 0.90988 0.92767 0.93892 0.88989 0.96985 0.92018 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 14.32 29.01 0.42 -0.18 16 2 C -0.18 -0.91 9.72 -36.03 -0.35 -1.26 16 3 C 0.15 0.66 6.98 -5.19 -0.04 0.63 16 4 N -0.36 -3.14 3.68 -62.24 -0.23 -3.36 16 5 C 0.09 0.86 11.27 -16.84 -0.19 0.67 16 6 C -0.10 -1.25 6.99 -83.55 -0.58 -1.83 16 7 C 0.60 9.06 7.82 -12.48 -0.10 8.96 16 8 O -0.54 -9.51 16.86 5.28 0.09 -9.42 16 9 N -0.70 -10.38 4.64 -61.35 -0.28 -10.67 16 10 C 0.14 2.31 4.43 -4.04 -0.02 2.29 16 11 C -0.08 -1.39 0.53 -153.05 -0.08 -1.47 16 12 C -0.11 -1.60 5.75 -25.20 -0.14 -1.75 16 13 C -0.12 -1.78 6.88 -24.50 -0.17 -1.95 16 14 C -0.13 -2.38 6.23 -24.82 -0.15 -2.53 16 15 C 0.17 3.51 3.60 -65.86 -0.24 3.27 16 16 H 0.05 0.97 7.93 -51.93 -0.41 0.56 16 17 N -0.60 -14.88 2.99 -162.42 -0.49 -15.36 16 18 C -0.22 -6.00 9.96 -15.06 -0.15 -6.15 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.33 5.48 -17.43 -0.10 -0.43 16 21 N -0.92 -27.10 10.14 55.49 0.56 -26.53 16 22 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.16 3.96 5.65 -3.34 -0.02 3.94 16 27 C -0.13 -2.51 5.77 -25.72 -0.15 -2.66 16 28 N -0.20 -2.76 12.04 32.84 0.40 -2.36 16 29 N -0.06 -0.73 13.64 60.35 0.82 0.10 16 30 H 0.11 0.37 8.06 -52.49 -0.42 -0.05 16 31 H 0.10 0.29 7.84 -52.49 -0.41 -0.12 16 32 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.11 0.17 8.08 -51.93 -0.42 -0.25 16 34 H 0.10 0.31 7.79 -51.93 -0.40 -0.10 16 35 H 0.20 1.27 8.06 -52.48 -0.42 0.85 16 36 H 0.41 5.62 7.24 -40.82 -0.30 5.32 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 0.79 7.51 -51.93 -0.39 0.40 16 40 H 0.06 0.91 7.28 -51.93 -0.38 0.53 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.09 2.53 6.16 -51.93 -0.32 2.21 16 47 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 1.13 7.42 -51.93 -0.39 0.74 16 49 H 0.06 1.01 7.03 -51.93 -0.36 0.64 16 LS Contribution 397.74 15.07 5.99 5.99 Total: -1.00 -33.56 397.74 -7.77 -41.33 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.55 Total: 3.44 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -2.06 Total: -0.44 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.78 Total: -58.20 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.56 -7.77 -41.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094531440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.851 kcal (2) G-P(sol) polarization free energy of solvation -33.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds