Wall clock time and date at job start Wed Apr 1 2020 03:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50700 * 119.99903 * 2 1 4 4 N 1.46500 * 109.47185 * 124.99974 * 3 2 1 5 5 C 1.34813 * 126.59554 * 125.00045 * 4 3 2 6 6 C 1.36593 * 106.84090 * 179.97438 * 5 4 3 7 7 C 1.47518 * 125.77137 * 180.02562 * 6 5 4 8 8 O 1.21602 * 120.00051 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.46500 * 119.99890 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46806 * 180.02562 * 10 9 7 12 12 C 1.53359 * 111.22912 * 297.63152 * 11 10 9 13 13 C 1.55538 * 105.83359 * 241.97347 * 12 11 10 14 14 C 1.54674 * 104.35468 * 334.35422 * 13 12 11 15 15 C 1.54573 * 111.31663 * 177.45313 * 11 10 9 16 16 H 1.09003 * 111.92262 * 18.71664 * 15 11 10 17 17 N 1.46894 * 107.36998 * 255.62092 * 15 11 10 18 18 C 1.36934 * 125.25220 * 181.65786 * 17 15 11 19 19 H 1.08005 * 119.99922 * 359.97302 * 18 17 15 20 20 C 1.38812 * 120.00037 * 179.97438 * 18 17 15 21 21 N 1.31613 * 119.99902 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99920 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47171 * 89.99938 * 22 20 18 24 24 H 1.48499 * 109.46935 * 210.00171 * 22 20 18 25 25 H 1.48504 * 109.47178 * 330.00204 * 22 20 18 26 26 C 1.46741 * 109.49836 * 1.65548 * 17 15 11 27 27 C 1.53864 * 111.25751 * 61.01479 * 11 10 9 28 28 N 1.34399 * 108.45968 * 359.97438 * 6 5 4 29 29 N 1.28761 * 109.52212 * 359.75173 * 28 6 5 30 30 H 1.08000 * 119.99390 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.00108 * 0.02562 * 1 2 3 32 32 H 1.07995 * 120.00080 * 179.72973 * 2 1 3 33 33 H 1.09000 * 109.46979 * 245.00349 * 3 2 1 34 34 H 1.08997 * 109.47064 * 5.00286 * 3 2 1 35 35 H 1.08007 * 126.57702 * 359.97438 * 5 4 3 36 36 H 0.96999 * 119.99841 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.47581 * 300.00083 * 10 9 7 38 38 H 1.08999 * 109.47348 * 60.00441 * 10 9 7 39 39 H 1.08998 * 110.05337 * 1.97779 * 12 11 10 40 40 H 1.08998 * 110.05877 * 123.47764 * 12 11 10 41 41 H 1.09007 * 110.53932 * 215.54238 * 13 12 11 42 42 H 1.09000 * 110.23737 * 93.01890 * 13 12 11 43 43 H 1.09001 * 110.61567 * 278.65427 * 14 13 12 44 44 H 1.09001 * 110.74886 * 155.72715 * 14 13 12 45 45 H 0.97005 * 119.99886 * 179.97438 * 21 20 18 46 46 H 1.08991 * 110.04527 * 221.97139 * 26 17 15 47 47 H 1.08997 * 110.07988 * 100.53252 * 26 17 15 48 48 H 1.09002 * 110.57418 * 212.50906 * 27 11 10 49 49 H 1.08994 * 110.57767 * 335.39244 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 4.3230 1.5498 1.0741 6 6 4.7899 1.4873 2.3562 7 6 6.1937 1.6670 2.7724 8 8 7.0505 1.8933 1.9397 9 7 6.5265 1.5813 4.0756 10 6 7.9207 1.7592 4.4888 11 6 8.0248 1.6135 6.0083 12 6 7.2112 2.6966 6.7271 13 6 8.2395 3.5234 7.5506 14 6 9.4071 2.5409 7.8033 15 6 9.4905 1.7308 6.4850 16 1 10.1244 2.2087 5.7380 17 7 9.9557 0.3760 6.8102 18 6 11.1956 0.0623 7.2995 19 1 11.9206 0.8435 7.4745 20 6 11.5207 -1.2598 7.5704 21 7 10.6374 -2.2117 7.3565 22 14 13.2124 -1.6878 8.2370 23 1 13.1835 -1.6506 9.7213 24 1 13.5933 -3.0495 7.7833 25 1 14.2054 -0.7035 7.7365 26 6 8.8867 -0.5894 6.5301 27 6 7.5743 0.2155 6.4668 28 7 3.7540 1.2354 3.1746 29 7 2.6719 1.1427 2.4829 30 1 -0.5399 -0.9354 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 0.0044 33 1 2.6213 1.4026 -0.9314 34 1 1.3586 2.1316 0.0896 35 1 4.9066 1.7377 0.1849 36 1 5.8430 1.4011 4.7399 37 1 8.5415 1.0030 4.0083 38 1 8.2632 2.7512 4.1943 39 1 6.6991 3.3248 5.9982 40 1 6.4869 2.2361 7.3989 41 1 7.8017 3.8469 8.4950 42 1 8.5816 4.3824 6.9733 43 1 9.1812 1.8843 8.6435 44 1 10.3363 3.0826 7.9802 45 1 10.8648 -3.1357 7.5455 46 1 8.8329 -1.3294 7.3285 47 1 9.0687 -1.0828 5.5754 48 1 7.1087 0.2668 7.4510 49 1 6.8903 -0.2238 5.7408 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094531440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:22 Heat of formation + Delta-G solvation = 84.446795 kcal Electronic energy + Delta-G solvation = -30211.478951 eV Core-core repulsion = 26175.898288 eV Total energy + Delta-G solvation = -4035.580663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.22348 -41.29076 -39.99201 -36.91188 -36.32203 -35.38923 -33.77763 -33.42945 -32.30180 -31.66270 -29.34344 -28.32612 -28.00729 -26.06500 -25.67351 -24.20031 -23.28980 -22.15212 -21.59082 -21.25808 -20.85378 -19.86004 -19.15884 -18.68391 -17.32085 -17.12894 -16.92041 -16.82767 -16.28234 -16.20687 -16.07962 -15.68662 -15.51214 -15.13616 -14.93133 -14.60370 -14.55125 -14.33237 -14.06377 -13.51874 -13.41649 -13.19628 -13.06398 -12.90660 -12.82919 -12.61689 -12.50901 -12.40890 -12.28803 -12.01295 -11.85716 -11.60253 -11.57103 -11.42984 -11.36769 -11.33404 -11.15982 -11.02027 -10.66067 -10.58180 -10.37639 -10.01758 -8.81151 -7.74737 -5.15101 0.15330 0.62173 0.79497 1.46024 1.47796 1.56198 1.59381 2.10732 2.24439 2.51983 3.18419 3.35803 3.42411 3.54040 3.67764 3.72770 3.80079 3.84138 3.96810 4.00646 4.12527 4.29696 4.39395 4.45179 4.46169 4.54719 4.55178 4.60920 4.68368 4.69702 4.80614 4.87239 4.94402 4.95210 5.06082 5.17853 5.19837 5.29668 5.36971 5.40837 5.43026 5.48121 5.55092 5.57575 5.63260 5.67515 5.73266 5.88700 6.32882 6.42295 6.91133 7.12767 7.16668 7.86725 8.48621 9.29250 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.002268 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.828107 B =12344.081704 C =13061.807950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.200 4.200 3 C 0.142 3.858 4 N -0.347 5.347 5 C 0.111 3.889 6 C -0.125 4.125 7 C 0.602 3.398 8 O -0.572 6.572 9 N -0.700 5.700 10 C 0.152 3.848 11 C -0.068 4.068 12 C -0.103 4.103 13 C -0.110 4.110 14 C -0.125 4.125 15 C 0.159 3.841 16 H 0.042 0.958 17 N -0.614 5.614 18 C -0.225 4.225 19 H 0.080 0.920 20 C -0.072 4.072 21 N -0.952 5.952 22 Si 0.975 3.025 23 H -0.286 1.286 24 H -0.298 1.298 25 H -0.271 1.271 26 C 0.170 3.830 27 C -0.119 4.119 28 N -0.225 5.225 29 N -0.082 5.082 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.238 0.762 36 H 0.414 0.586 37 H 0.041 0.959 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.053 0.947 45 H 0.243 0.757 46 H 0.056 0.944 47 H -0.026 1.026 48 H 0.072 0.928 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.771 11.684 -15.164 28.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.218 4.218 3 C 0.024 3.976 4 N -0.131 5.131 5 C -0.047 4.047 6 C -0.265 4.265 7 C 0.388 3.612 8 O -0.451 6.451 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.069 4.069 12 C -0.141 4.141 13 C -0.148 4.148 14 C -0.164 4.164 15 C 0.052 3.948 16 H 0.060 0.940 17 N -0.338 5.338 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.264 4.264 21 N -0.602 5.602 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.225 1.225 25 H -0.196 1.196 26 C 0.045 3.955 27 C -0.157 4.157 28 N -0.099 5.099 29 N -0.062 5.062 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.124 0.876 33 H 0.166 0.834 34 H 0.139 0.861 35 H 0.254 0.746 36 H 0.251 0.749 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.074 0.926 47 H -0.008 1.008 48 H 0.090 0.910 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.194 11.391 -14.727 28.970 hybrid contribution 1.719 -1.056 -0.069 2.019 sum -20.475 10.334 -14.796 27.294 Atomic orbital electron populations 1.24206 0.95296 1.03785 0.94664 1.22879 0.96798 0.97336 1.04830 1.21604 0.92190 0.98432 0.85329 1.50848 1.06973 1.46376 1.08900 1.23874 0.84842 0.95418 1.00546 1.21383 0.94433 1.18660 0.91983 1.17001 0.85548 0.76152 0.82545 1.90791 1.50418 1.51539 1.52338 1.45737 1.10527 1.71096 1.07673 1.21147 0.81423 1.01105 0.93494 1.21756 0.95719 0.96417 0.93034 1.22359 0.97209 0.95830 0.98702 1.22470 0.94782 0.97315 1.00237 1.22817 0.98363 0.97440 0.97810 1.21813 0.92131 0.86011 0.94804 0.94013 1.44596 1.11852 1.02234 1.75074 1.19385 0.89971 0.92341 1.33694 0.90175 1.25601 1.01765 0.95834 1.03235 1.70151 1.34749 0.99330 1.55979 0.85111 0.79767 0.76804 0.77887 1.21270 1.22473 1.19567 1.21148 0.85569 0.91902 0.96889 1.22633 0.97373 0.94786 1.00904 1.74629 0.96804 1.10480 1.27938 1.81924 1.16667 1.22667 0.84978 0.87075 0.86422 0.87627 0.83368 0.86113 0.74603 0.74870 0.94065 0.90472 0.89966 0.90603 0.90446 0.90617 0.93444 0.92804 0.94704 0.92597 1.00839 0.90974 0.91104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 14.32 67.78 0.97 0.12 16 2 C -0.20 -1.60 9.72 25.64 0.25 -1.35 16 3 C 0.14 0.80 6.98 85.63 0.60 1.39 16 4 N -0.35 -5.17 3.68 -350.83 -1.29 -6.46 16 5 C 0.11 1.83 11.27 83.85 0.95 2.78 16 6 C -0.12 -3.06 6.99 40.81 0.29 -2.77 16 7 C 0.60 17.75 7.82 86.69 0.68 18.43 16 8 O -0.57 -19.76 16.86 -4.04 -0.07 -19.83 16 9 N -0.70 -20.07 4.64 -466.27 -2.17 -22.23 16 10 C 0.15 4.95 4.43 86.38 0.38 5.33 16 11 C -0.07 -2.27 0.53 -51.23 -0.03 -2.29 16 12 C -0.10 -2.66 5.75 31.59 0.18 -2.48 16 13 C -0.11 -2.85 6.88 32.04 0.22 -2.63 16 14 C -0.12 -4.43 6.23 31.83 0.20 -4.23 16 15 C 0.16 6.46 3.60 46.12 0.17 6.63 16 16 H 0.04 1.75 7.93 -2.39 -0.02 1.73 16 17 N -0.61 -31.75 2.99 -667.76 -1.99 -33.75 16 18 C -0.22 -12.73 9.96 84.03 0.84 -11.90 16 19 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 20 C -0.07 -4.21 5.48 84.86 0.47 -3.75 16 21 N -0.95 -58.68 10.14 21.65 0.22 -58.46 16 22 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 23 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 25 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 26 C 0.17 8.72 5.65 86.70 0.49 9.21 16 27 C -0.12 -4.48 5.77 31.25 0.18 -4.30 16 28 N -0.22 -5.85 12.04 -50.00 -0.60 -6.45 16 29 N -0.08 -1.88 13.64 37.02 0.50 -1.37 16 30 H 0.11 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.12 0.34 7.84 -2.91 -0.02 0.32 16 32 H 0.11 1.11 8.06 -2.91 -0.02 1.08 16 33 H 0.15 -0.17 8.08 -2.39 -0.02 -0.19 16 34 H 0.12 0.29 7.79 -2.39 -0.02 0.27 16 35 H 0.24 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.41 10.87 7.24 -92.71 -0.67 10.20 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.08 1.83 7.51 -2.39 -0.02 1.81 16 40 H 0.08 1.85 7.28 -2.39 -0.02 1.83 16 41 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 44 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.24 14.66 8.31 -92.70 -0.77 13.89 16 46 H 0.06 3.26 6.16 -2.39 -0.01 3.25 16 47 H -0.03 -1.52 8.14 -2.39 -0.02 -1.54 16 48 H 0.07 2.59 7.42 -2.39 -0.02 2.57 16 49 H 0.07 2.48 7.03 -2.39 -0.02 2.46 16 Total: -1.00 -77.46 397.74 3.74 -73.72 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.29 Total: 17.51 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 6.82 Total: 8.19 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -5.33 Total: -128.71 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.07 Total: -19.83 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -77.46 3.74 -73.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094531440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.168 kcal (2) G-P(sol) polarization free energy of solvation -77.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds