Wall clock time and date at job start Wed Apr 1 2020 04:10:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08999 * 109.47304 * 2 1
4 4 C 1.53001 * 109.47303 * 239.99455 * 2 1 3
5 5 C 1.52998 * 109.47516 * 175.00365 * 4 2 1
6 6 H 1.09000 * 109.46838 * 55.00146 * 5 4 2
7 7 C 1.52994 * 109.47344 * 175.00205 * 5 4 2
8 8 N 1.46505 * 109.46870 * 295.00289 * 5 4 2
9 9 C 1.34778 * 119.99808 * 154.99987 * 8 5 4
10 10 O 1.21642 * 119.99907 * 359.97438 * 9 8 5
11 11 C 1.47113 * 119.99921 * 179.97438 * 9 8 5
12 12 C 1.36698 * 126.95735 * 0.02683 * 11 9 8
13 13 N 1.34644 * 108.66042 * 179.97438 * 12 11 9
14 14 H 0.97002 * 124.74856 * 179.97438 * 13 12 11
15 15 C 1.36447 * 110.49735 * 359.97438 * 13 12 11
16 16 C 1.35604 * 108.67800 * 359.97438 * 15 13 12
17 17 C 1.48514 * 126.95812 * 180.02562 * 16 15 13
18 18 C 1.40822 * 126.21033 * 130.00545 * 17 16 15
19 19 N 1.30700 * 108.12773 * 179.97438 * 18 17 16
20 20 N 1.40026 * 108.51654 * 359.97438 * 19 18 17
21 21 C 1.46494 * 125.90620 * 179.97438 * 20 19 18
22 22 C 1.34972 * 108.17756 * 359.73537 * 20 19 18
23 23 N 1.46507 * 109.46813 * 120.00236 * 2 1 3
24 24 C 1.36942 * 119.99326 * 274.99769 * 23 2 1
25 25 H 1.07990 * 120.00410 * 359.97438 * 24 23 2
26 26 C 1.38810 * 119.99629 * 180.02562 * 24 23 2
27 27 N 1.31627 * 119.99853 * 359.97438 * 26 24 23
28 28 Si 1.86793 * 120.00130 * 179.97438 * 26 24 23
29 29 H 1.48503 * 109.47359 * 90.00010 * 28 26 24
30 30 H 1.48499 * 109.47482 * 209.99968 * 28 26 24
31 31 H 1.48501 * 109.47084 * 330.00165 * 28 26 24
32 32 H 1.09000 * 109.47070 * 300.00627 * 1 2 3
33 33 H 1.09001 * 109.46975 * 60.00258 * 1 2 3
34 34 H 1.08999 * 109.47304 * 179.97438 * 1 2 3
35 35 H 1.09004 * 109.47090 * 55.00364 * 4 2 1
36 36 H 1.09005 * 109.47231 * 295.00888 * 4 2 1
37 37 H 1.09000 * 109.47201 * 60.00163 * 7 5 4
38 38 H 1.09002 * 109.47148 * 179.97438 * 7 5 4
39 39 H 1.08996 * 109.47444 * 299.99853 * 7 5 4
40 40 H 0.96998 * 120.00181 * 334.99648 * 8 5 4
41 41 H 1.07999 * 125.66537 * 0.25534 * 12 11 9
42 42 H 1.07996 * 125.65984 * 180.02562 * 15 13 12
43 43 H 1.07996 * 125.93596 * 359.97438 * 18 17 16
44 44 H 1.08999 * 109.47424 * 89.97926 * 21 20 19
45 45 H 1.09003 * 109.47012 * 209.97680 * 21 20 19
46 46 H 1.09004 * 109.47986 * 329.97735 * 21 20 19
47 47 H 1.08003 * 126.20114 * 180.26935 * 22 20 19
48 48 H 0.96993 * 120.00474 * 94.99831 * 23 2 1
49 49 H 0.97004 * 119.99399 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0401 -0.7214 -1.2492
5 6 3.5649 -0.6135 -1.3136
6 1 3.9954 -0.9925 -0.3867
7 6 4.0852 -1.4386 -2.4923
8 7 3.9480 0.7892 -1.4924
9 6 5.1613 1.2133 -1.0867
10 8 5.9380 0.4315 -0.5716
11 6 5.5463 2.6217 -1.2667
12 6 4.7908 3.6155 -1.8237
13 7 5.5008 4.7593 -1.8031
14 1 5.1856 5.6119 -2.1418
15 6 6.7256 4.5514 -1.2389
16 6 6.8232 3.2470 -0.8813
17 6 7.9829 2.5831 -0.2332
18 6 7.9403 1.7677 0.9141
19 7 9.1576 1.3703 1.1760
20 7 10.0187 1.9114 0.2135
21 6 11.4682 1.7097 0.1472
22 6 9.2815 2.6465 -0.6454
23 7 2.0183 -0.6907 1.1962
24 6 2.1490 -0.0075 2.3758
25 1 1.8926 1.0405 2.4242
26 6 2.6122 -0.6617 3.5091
27 7 2.9251 -1.9388 3.4500
28 14 2.7912 0.2703 5.1179
29 1 1.5238 0.1793 5.8865
30 1 3.8961 -0.3228 5.9134
31 1 3.0961 1.6955 4.8331
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5138 -0.8900
34 1 -0.3634 -1.0276 -0.0005
35 1 1.6055 -0.2619 -2.1370
36 1 1.7516 -1.7716 -1.2055
37 1 3.6547 -1.0596 -3.4192
38 1 5.1715 -1.3613 -2.5385
39 1 3.8001 -2.4821 -2.3593
40 1 3.3286 1.4127 -1.9028
41 1 3.7891 3.5028 -2.2114
42 1 7.4901 5.3013 -1.0995
43 1 7.0556 1.5147 1.4794
44 1 11.6855 0.8320 -0.4615
45 1 11.9370 2.5866 -0.2994
46 1 11.8609 1.5605 1.1530
47 1 9.6530 3.1892 -1.5021
48 1 2.2489 -1.6318 1.1527
49 1 3.2491 -2.3959 4.2419
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001134361416.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:29
Heat of formation + Delta-G solvation = 67.629057 kcal
Electronic energy + Delta-G solvation = -30735.920741 eV
Core-core repulsion = 26699.610806 eV
Total energy + Delta-G solvation = -4036.309934 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-42.19546 -41.49174 -40.14764 -38.09037 -35.90366 -34.29256 -33.94770 -32.65022
-32.30353 -30.55233 -30.18904 -29.20107 -27.54368 -27.25137 -25.64438 -24.28029
-22.74783 -22.21447 -21.83865 -21.14837 -20.54889 -20.00506 -19.35678 -19.14558
-17.35670 -17.17140 -16.91342 -16.46046 -16.22741 -15.80297 -15.60764 -15.39087
-15.24754 -14.85677 -14.69827 -14.47955 -14.45020 -14.13901 -13.96511 -13.71424
-13.59440 -13.54339 -13.31076 -13.23290 -13.09628 -12.92436 -12.78195 -12.67444
-12.64270 -12.19958 -12.17265 -11.76674 -11.63833 -11.51151 -11.36110 -10.88283
-10.68859 -10.29358 -9.99231 -9.79666 -9.23859 -8.90777 -8.63949 -7.89633
-5.13928 0.89260 1.04921 1.40628 1.40958 1.44859 1.51050 1.78806
2.16536 2.45742 2.57558 2.64387 2.86850 3.45505 3.75203 3.88806
4.05270 4.07891 4.17942 4.21613 4.27458 4.39630 4.43681 4.46259
4.48708 4.60702 4.68120 4.69954 4.75847 4.83712 4.87566 4.92421
4.93385 4.99858 5.02460 5.09679 5.14290 5.28822 5.35540 5.42224
5.49856 5.56910 5.68445 5.68828 5.82867 5.88882 6.08450 6.28611
6.33823 6.80466 6.84116 6.98221 7.39467 7.70969 8.21254 8.39757
9.34520
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.008347 B = 0.003892 C = 0.003250
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3353.676773 B = 7193.438674 C = 8612.504138
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C 0.165 3.835
3 H 0.044 0.956
4 C -0.116 4.116
5 C 0.151 3.849
6 H 0.038 0.962
7 C -0.148 4.148
8 N -0.705 5.705
9 C 0.573 3.427
10 O -0.589 6.589
11 C -0.258 4.258
12 C 0.070 3.930
13 N -0.527 5.527
14 H 0.440 0.560
15 C 0.006 3.994
16 C -0.076 4.076
17 C -0.173 4.173
18 C 0.071 3.929
19 N -0.351 5.351
20 N -0.381 5.381
21 C 0.095 3.905
22 C 0.070 3.930
23 N -0.732 5.732
24 C -0.220 4.220
25 H 0.070 0.930
26 C -0.079 4.079
27 N -0.970 5.970
28 Si 0.957 3.043
29 H -0.282 1.282
30 H -0.304 1.304
31 H -0.274 1.274
32 H 0.029 0.971
33 H 0.079 0.921
34 H 0.040 0.960
35 H 0.109 0.891
36 H 0.071 0.929
37 H 0.083 0.917
38 H 0.030 0.970
39 H 0.064 0.936
40 H 0.407 0.593
41 H 0.207 0.793
42 H 0.203 0.797
43 H 0.140 0.860
44 H 0.079 0.921
45 H 0.127 0.873
46 H 0.084 0.916
47 H 0.220 0.780
48 H 0.368 0.632
49 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.313 18.484 -21.398 29.472
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.057 3.943
3 H 0.063 0.937
4 C -0.154 4.154
5 C 0.046 3.954
6 H 0.057 0.943
7 C -0.207 4.207
8 N -0.357 5.357
9 C 0.363 3.637
10 O -0.470 6.470
11 C -0.268 4.268
12 C -0.068 4.068
13 N -0.123 5.123
14 H 0.281 0.719
15 C -0.123 4.123
16 C -0.083 4.083
17 C -0.185 4.185
18 C -0.115 4.115
19 N -0.173 5.173
20 N -0.163 5.163
21 C -0.045 4.045
22 C -0.077 4.077
23 N -0.371 5.371
24 C -0.352 4.352
25 H 0.088 0.912
26 C -0.270 4.270
27 N -0.622 5.622
28 Si 0.788 3.212
29 H -0.209 1.209
30 H -0.231 1.231
31 H -0.199 1.199
32 H 0.048 0.952
33 H 0.098 0.902
34 H 0.059 0.941
35 H 0.127 0.873
36 H 0.090 0.910
37 H 0.102 0.898
38 H 0.049 0.951
39 H 0.083 0.917
40 H 0.244 0.756
41 H 0.224 0.776
42 H 0.220 0.780
43 H 0.158 0.842
44 H 0.097 0.903
45 H 0.145 0.855
46 H 0.103 0.897
47 H 0.237 0.763
48 H 0.200 0.800
49 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges 9.744 17.515 -20.190 28.449
hybrid contribution -0.706 0.129 1.031 1.256
sum 9.038 17.644 -19.159 27.569
Atomic orbital electron populations
1.22304 0.97641 1.00775 1.00781 1.20523 0.92591 0.95319 0.85882
0.93749 1.22062 0.92748 1.01995 0.98623 1.20693 0.95408 0.81579
0.97751 0.94315 1.22055 0.99984 1.00078 0.98539 1.45616 1.16174
1.10909 1.62973 1.17958 0.81477 0.87542 0.76685 1.90781 1.52858
1.57753 1.45576 1.20480 0.98399 0.92855 1.15096 1.22191 0.98421
0.84685 1.01470 1.41386 1.12620 1.11107 1.47153 0.71870 1.22060
0.90180 0.96062 1.03992 1.18490 0.92245 0.93133 1.04463 1.18304
0.92984 1.08047 0.99121 1.23586 0.94183 0.96142 0.97558 1.77175
1.01652 1.23249 1.15219 1.48725 1.08736 1.38015 1.20855 1.22185
0.72506 1.04957 1.04802 1.23035 0.90409 0.97506 0.96795 1.42613
1.78161 1.10028 1.06344 1.19492 1.33626 0.93719 0.88401 0.91203
1.25392 1.03713 0.96801 1.01127 1.69807 1.53324 1.10164 1.28879
0.85355 0.76824 0.78059 0.80967 1.20918 1.23103 1.19932 0.95200
0.90223 0.94125 0.87294 0.91017 0.89783 0.95093 0.91660 0.75609
0.77610 0.77999 0.84216 0.90294 0.85504 0.89690 0.76317 0.80033
0.94585
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -5.13 9.49 71.98 0.68 -4.45 16
2 C 0.16 6.21 2.84 44.99 0.13 6.34 16
3 H 0.04 1.69 7.56 -2.39 -0.02 1.68 16
4 C -0.12 -3.45 4.29 30.59 0.13 -3.32 16
5 C 0.15 5.24 2.52 44.99 0.11 5.35 16
6 H 0.04 1.89 7.05 -2.39 -0.02 1.87 16
7 C -0.15 -4.37 9.48 71.98 0.68 -3.69 16
8 N -0.70 -21.65 4.44 -446.10 -1.98 -23.63 16
9 C 0.57 21.72 7.77 86.57 0.67 22.39 16
10 O -0.59 -29.18 14.24 -4.16 -0.06 -29.24 16
11 C -0.26 -7.54 6.30 -18.92 -0.12 -7.66 16
12 C 0.07 1.19 11.39 83.90 0.96 2.14 16
13 N -0.53 -6.01 5.89 -193.81 -1.14 -7.15 16
14 H 0.44 1.07 8.96 -92.71 -0.83 0.24 16
15 C 0.01 0.11 11.87 83.37 0.99 1.10 16
16 C -0.08 -2.13 6.18 -18.76 -0.12 -2.24 16
17 C -0.17 -5.66 5.48 -20.33 -0.11 -5.77 16
18 C 0.07 2.97 10.39 85.49 0.89 3.86 16
19 N -0.35 -14.01 12.54 -56.46 -0.71 -14.72 16
20 N -0.38 -10.69 4.01 -368.64 -1.48 -12.17 16
21 C 0.10 1.51 11.46 127.77 1.46 2.98 16
22 C 0.07 1.72 11.45 83.78 0.96 2.68 16
23 N -0.73 -37.96 4.49 -322.93 -1.45 -39.41 16
24 C -0.22 -12.88 9.93 84.03 0.83 -12.04 16
25 H 0.07 3.96 7.83 -2.92 -0.02 3.93 16
26 C -0.08 -4.86 5.50 84.86 0.47 -4.40 16
27 N -0.97 -64.16 13.06 21.65 0.28 -63.88 16
28 Si 0.96 50.48 29.55 68.60 2.03 52.50 16
29 H -0.28 -14.24 7.11 99.48 0.71 -13.54 16
30 H -0.30 -16.48 7.11 99.48 0.71 -15.77 16
31 H -0.27 -13.84 7.11 99.48 0.71 -13.13 16
32 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16
33 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16
34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16
35 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16
36 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16
37 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16
39 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16
40 H 0.41 8.77 7.54 -92.71 -0.70 8.08 16
41 H 0.21 1.78 7.44 -2.91 -0.02 1.76 16
42 H 0.20 1.82 8.06 -2.91 -0.02 1.79 16
43 H 0.14 6.85 7.83 -2.91 -0.02 6.83 16
44 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
45 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16
46 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16
47 H 0.22 2.88 8.06 -2.91 -0.02 2.86 16
48 H 0.37 21.02 7.80 -92.71 -0.72 20.30 16
49 H 0.25 15.94 8.31 -92.71 -0.77 15.16 16
Total: -1.00 -98.47 411.86 2.85 -95.62
By element:
Atomic # 1 Polarization: 40.08 SS G_CDS: -1.27 Total: 38.81 kcal
Atomic # 6 Polarization: -5.36 SS G_CDS: 8.62 Total: 3.26 kcal
Atomic # 7 Polarization: -154.49 SS G_CDS: -6.47 Total: -160.96 kcal
Atomic # 8 Polarization: -29.18 SS G_CDS: -0.06 Total: -29.24 kcal
Atomic # 14 Polarization: 50.48 SS G_CDS: 2.03 Total: 52.50 kcal
Total: -98.47 2.85 -95.62 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001134361416.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 163.249 kcal
(2) G-P(sol) polarization free energy of solvation -98.470 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.779 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.620 kcal
(6) G-S(sol) free energy of system = (1) + (5) 67.629 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds