Wall clock time and date at job start Wed Apr 1 2020 04:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21569 * 119.99826 * 359.97438 * 18 17 2 20 20 C 1.47736 * 119.99905 * 179.97438 * 18 17 2 21 21 C 1.41227 * 126.33930 * 180.02562 * 20 18 17 22 22 C 1.36683 * 105.43678 * 179.97438 * 21 20 18 23 23 C 1.48051 * 126.59925 * 180.02562 * 22 21 20 24 24 C 1.41923 * 126.46948 * 0.02562 * 23 22 21 25 25 C 1.34592 * 107.32962 * 180.02562 * 24 23 22 26 26 N 1.36433 * 108.55874 * 359.97438 * 25 24 23 27 27 C 1.46499 * 125.48969 * 179.97438 * 26 25 24 28 28 C 1.36157 * 109.01696 * 359.73788 * 26 25 24 29 29 N 1.36319 * 106.81128 * 359.97438 * 22 21 20 30 30 H 0.96999 * 125.00365 * 180.02562 * 29 22 21 31 31 N 1.28447 * 109.99627 * 359.75016 * 29 22 21 32 32 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 34 34 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 35 35 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 36 36 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 37 37 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 38 38 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 39 39 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 40 40 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 41 41 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 42 42 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 43 43 H 1.08006 * 127.28505 * 0.02562 * 21 20 18 44 44 H 1.08000 * 126.33641 * 359.97438 * 24 23 22 45 45 H 1.07997 * 125.71626 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47111 * 90.02542 * 27 26 25 47 47 H 1.08999 * 109.47125 * 210.02508 * 27 26 25 48 48 H 1.08998 * 109.46953 * 330.02750 * 27 26 25 49 49 H 1.08005 * 125.97880 * 180.27241 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8583 1.1614 2.4116 20 6 2.6389 -0.7149 3.5636 21 6 2.8238 -0.1446 4.8423 22 6 3.2886 -1.1604 5.6299 23 6 3.6381 -1.0747 7.0660 24 6 3.5535 0.0796 7.8874 25 6 3.9639 -0.2741 9.1194 26 7 4.2996 -1.5964 9.1024 27 6 4.7946 -2.3631 10.2484 28 6 4.0955 -2.0899 7.8499 29 7 3.3673 -2.2681 4.8392 30 1 3.6674 -3.1420 5.1340 31 7 2.9801 -1.9854 3.6475 32 1 -0.3635 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6054 -0.2618 -2.1369 36 1 1.7515 -1.7716 -1.2055 37 1 3.6263 -0.6888 -3.4657 38 1 5.1507 -1.1479 -2.6701 39 1 3.7721 -2.2742 -2.6699 40 1 3.6646 -2.0586 0.2387 41 1 4.4079 -2.8955 1.5989 42 1 2.2489 -1.6318 1.1527 43 1 2.6368 0.8778 5.1360 44 1 3.2220 1.0605 7.5804 45 1 4.0184 0.3793 9.9776 46 1 3.9522 -2.8019 10.7831 47 1 5.4548 -3.1561 9.8972 48 1 5.3449 -1.7018 10.9176 49 1 4.2691 -3.1076 7.5328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134556867.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:05 Heat of formation + Delta-G solvation = 103.817475 kcal Electronic energy + Delta-G solvation = -31007.039310 eV Core-core repulsion = 26972.298623 eV Total energy + Delta-G solvation = -4034.740687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.87501 -40.92364 -38.91388 -36.65178 -34.13899 -33.45831 -32.32610 -31.37354 -30.42445 -30.04991 -28.37284 -28.04869 -26.27807 -26.17296 -23.67743 -23.27264 -21.87643 -20.77869 -20.19046 -20.17756 -19.65546 -18.98686 -17.95884 -17.19552 -16.44801 -15.88637 -15.55145 -15.43932 -14.93546 -14.75638 -14.16642 -13.91791 -13.85557 -13.52426 -13.35636 -13.21127 -13.03246 -12.93136 -12.80408 -12.76523 -12.53915 -12.35843 -12.04874 -11.93296 -11.78876 -11.62518 -11.45615 -10.96076 -10.66622 -10.35964 -10.30293 -10.04391 -9.99502 -9.88575 -9.50919 -9.32857 -8.99402 -8.79835 -8.62664 -8.39341 -8.20557 -7.48981 -6.79672 -5.88582 -2.85918 1.85966 2.42509 2.55618 2.80906 3.44715 3.58013 3.63637 3.64122 3.76369 3.93661 4.34372 4.51304 4.79029 4.86678 4.87895 5.00607 5.10921 5.13629 5.22272 5.27346 5.46426 5.50964 5.55498 5.72342 5.80599 5.88041 5.95583 6.01376 6.04620 6.06311 6.15463 6.21042 6.27275 6.29942 6.43514 6.49724 6.53755 6.60174 6.64756 6.88579 6.92416 7.03155 7.10098 7.11427 7.25128 7.27973 7.65580 7.99796 8.28164 8.68371 8.96357 9.05374 9.43233 10.26322 10.42114 11.59565 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.003584 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.681742 B = 7809.759918 C = 9438.204423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.175 3.825 6 H 0.047 0.953 7 C -0.162 4.162 8 N -0.725 5.725 9 C -0.327 4.327 10 H 0.057 0.943 11 C -0.036 4.036 12 N -0.929 5.929 13 Si 1.068 2.932 14 H -0.290 1.290 15 H -0.300 1.300 16 H -0.299 1.299 17 N -0.688 5.688 18 C 0.617 3.383 19 O -0.558 6.558 20 C -0.018 4.018 21 C -0.169 4.169 22 C 0.075 3.925 23 C -0.091 4.091 24 C -0.170 4.170 25 C -0.017 4.017 26 N -0.450 5.450 27 C 0.075 3.925 28 C -0.008 4.008 29 N -0.370 5.370 30 H 0.440 0.560 31 N -0.198 5.198 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.062 0.938 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.362 0.638 41 H 0.258 0.742 42 H 0.405 0.595 43 H 0.152 0.848 44 H 0.142 0.858 45 H 0.164 0.836 46 H 0.071 0.929 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.456 -0.884 11.999 13.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.045 3.955 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.065 3.935 6 H 0.065 0.935 7 C -0.222 4.222 8 N -0.369 5.369 9 C -0.458 4.458 10 H 0.075 0.925 11 C -0.235 4.235 12 N -0.574 5.574 13 Si 0.902 3.098 14 H -0.216 1.216 15 H -0.228 1.228 16 H -0.227 1.227 17 N -0.340 5.340 18 C 0.402 3.598 19 O -0.436 6.436 20 C -0.178 4.178 21 C -0.197 4.197 22 C -0.049 4.049 23 C -0.100 4.100 24 C -0.195 4.195 25 C -0.146 4.146 26 N -0.126 5.126 27 C -0.067 4.067 28 C -0.140 4.140 29 N -0.084 5.084 30 H 0.283 0.717 31 N -0.033 5.033 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.197 0.803 41 H 0.070 0.930 42 H 0.242 0.758 43 H 0.170 0.830 44 H 0.160 0.840 45 H 0.181 0.819 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.169 -1.345 12.707 13.784 hybrid contribution -0.629 -0.034 -0.492 0.800 sum -5.799 -1.379 12.215 13.592 Atomic orbital electron populations 1.22210 0.96252 1.01607 1.01964 1.20812 0.92509 0.97753 0.84435 0.89819 1.22221 0.97931 1.00471 0.96651 1.20192 0.89474 0.95852 0.87987 0.93474 1.22413 1.01543 1.00139 0.98153 1.42417 1.19041 1.40008 1.35463 1.19863 0.94353 1.16619 1.14992 0.92542 1.25346 1.04961 0.97546 0.95633 1.70776 1.14113 1.29592 1.42932 0.83393 0.75570 0.75110 0.75755 1.21616 1.22801 1.22706 1.45797 1.65518 1.14308 1.08365 1.16787 0.76074 0.85297 0.81607 1.90686 1.52445 1.15249 1.85202 1.21594 1.09367 0.91452 0.95373 1.21398 1.07274 0.99514 0.91545 1.19066 1.06781 0.88311 0.90774 1.17319 1.08536 0.94557 0.89562 1.20846 1.07743 0.98685 0.92238 1.21713 1.08409 0.84669 0.99806 1.43787 1.50711 1.09194 1.08929 1.22013 1.00145 0.96920 0.87639 1.21736 1.08831 0.99195 0.84258 1.43338 1.48186 1.11270 1.05644 0.71685 1.73597 1.11828 1.16885 1.01034 0.92870 0.92280 0.92136 0.90785 0.91951 0.94628 0.92906 0.93845 0.80350 0.92994 0.75783 0.83020 0.83996 0.81911 0.91025 0.89853 0.89846 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.15 0.35 -2.01 16 2 C 0.15 2.63 2.57 -67.93 -0.17 2.46 16 3 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 4 C -0.13 -2.18 4.43 -26.73 -0.12 -2.30 16 5 C 0.17 3.51 2.89 -67.93 -0.20 3.31 16 6 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 7 C -0.16 -2.98 9.49 37.16 0.35 -2.63 16 8 N -0.72 -17.39 3.84 -53.43 -0.21 -17.60 16 9 C -0.33 -9.10 9.93 -15.06 -0.15 -9.25 16 10 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 11 C -0.04 -1.01 5.50 -17.43 -0.10 -1.10 16 12 N -0.93 -26.29 13.05 55.49 0.72 -25.56 16 13 Si 1.07 26.86 29.92 -169.99 -5.09 21.78 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 17 N -0.69 -13.81 3.80 -54.79 -0.21 -14.01 16 18 C 0.62 13.84 7.79 -12.38 -0.10 13.75 16 19 O -0.56 -13.47 16.58 5.30 0.09 -13.38 16 20 C -0.02 -0.39 7.11 -82.86 -0.59 -0.97 16 21 C -0.17 -3.36 10.57 -39.01 -0.41 -3.77 16 22 C 0.07 1.33 7.13 -82.41 -0.59 0.74 16 23 C -0.09 -1.36 6.12 -105.21 -0.64 -2.00 16 24 C -0.17 -2.26 10.65 -39.46 -0.42 -2.68 16 25 C -0.02 -0.19 11.40 -16.79 -0.19 -0.38 16 26 N -0.45 -4.59 3.14 -124.25 -0.39 -4.98 16 27 C 0.07 0.43 11.10 59.85 0.66 1.10 16 28 C -0.01 -0.10 11.40 -16.38 -0.19 -0.29 16 29 N -0.37 -6.65 6.90 33.32 0.23 -6.42 16 30 H 0.44 6.61 8.96 -190.45 -1.71 4.90 16 31 N -0.20 -4.13 10.93 33.37 0.36 -3.77 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.36 8.80 4.54 -40.82 -0.19 8.62 16 41 H 0.26 7.20 6.47 -40.82 -0.26 6.94 16 42 H 0.40 8.31 6.22 -40.82 -0.25 8.05 16 43 H 0.15 2.82 8.06 -52.48 -0.42 2.40 16 44 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.16 1.60 8.06 -52.48 -0.42 1.17 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -34.75 408.49 -9.59 -44.34 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -8.77 Total: 19.48 kcal Atomic # 6 Polarization: -3.53 SS G_CDS: -2.49 Total: -6.03 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: 0.51 Total: -72.35 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.09 Total: -13.38 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -5.09 Total: 21.78 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.75 -9.59 -44.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134556867.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.158 kcal (2) G-P(sol) polarization free energy of solvation -34.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds