Wall clock time and date at job start Wed Apr 1 2020 04:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 109.47447 * 2 1 4 4 C 1.52998 * 109.47152 * 239.99559 * 2 1 3 5 5 C 1.52998 * 109.47384 * 175.00127 * 4 2 1 6 6 H 1.09003 * 109.47082 * 305.00221 * 5 4 2 7 7 C 1.52995 * 109.47443 * 185.00170 * 5 4 2 8 8 N 1.46498 * 109.47009 * 65.00045 * 5 4 2 9 9 C 1.36935 * 120.00239 * 204.99963 * 8 5 4 10 10 H 1.08004 * 120.00069 * 0.02562 * 9 8 5 11 11 C 1.38811 * 120.00368 * 180.02562 * 9 8 5 12 12 N 1.31624 * 119.99540 * 359.72375 * 11 9 8 13 13 Si 1.86800 * 120.00451 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47364 * 179.72253 * 13 11 9 15 15 H 1.48508 * 109.46883 * 299.72375 * 13 11 9 16 16 H 1.48497 * 109.46870 * 59.72186 * 13 11 9 17 17 N 1.46502 * 109.47002 * 120.00309 * 2 1 3 18 18 C 1.34784 * 119.99713 * 274.99674 * 17 2 1 19 19 O 1.21569 * 119.99826 * 359.97438 * 18 17 2 20 20 C 1.47736 * 119.99905 * 179.97438 * 18 17 2 21 21 C 1.41227 * 126.33930 * 180.02562 * 20 18 17 22 22 C 1.36683 * 105.43678 * 179.97438 * 21 20 18 23 23 C 1.48051 * 126.59925 * 180.02562 * 22 21 20 24 24 C 1.41923 * 126.46948 * 0.02562 * 23 22 21 25 25 C 1.34592 * 107.32962 * 180.02562 * 24 23 22 26 26 N 1.36433 * 108.55874 * 359.97438 * 25 24 23 27 27 C 1.46499 * 125.48969 * 179.97438 * 26 25 24 28 28 C 1.36157 * 109.01696 * 359.73788 * 26 25 24 29 29 N 1.36319 * 106.81128 * 359.97438 * 22 21 20 30 30 H 0.96999 * 125.00365 * 180.02562 * 29 22 21 31 31 N 1.28447 * 109.99627 * 359.75016 * 29 22 21 32 32 H 1.09006 * 109.47749 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47223 * 300.00336 * 1 2 3 34 34 H 1.09004 * 109.47405 * 60.00047 * 1 2 3 35 35 H 1.08997 * 109.46877 * 55.00516 * 4 2 1 36 36 H 1.08999 * 109.47306 * 295.00668 * 4 2 1 37 37 H 1.09003 * 109.46933 * 60.00266 * 7 5 4 38 38 H 1.09004 * 109.47411 * 179.97438 * 7 5 4 39 39 H 1.08996 * 109.47329 * 300.00343 * 7 5 4 40 40 H 0.97004 * 119.99747 * 25.00702 * 8 5 4 41 41 H 0.97000 * 120.00481 * 0.27542 * 12 11 9 42 42 H 0.96995 * 120.00766 * 94.99860 * 17 2 1 43 43 H 1.08006 * 127.28505 * 0.02562 * 21 20 18 44 44 H 1.08000 * 126.33641 * 359.97438 * 24 23 22 45 45 H 1.07997 * 125.71626 * 179.97438 * 25 24 23 46 46 H 1.08997 * 109.47111 * 90.02542 * 27 26 25 47 47 H 1.08999 * 109.47125 * 210.02508 * 27 26 25 48 48 H 1.08998 * 109.46953 * 330.02750 * 27 26 25 49 49 H 1.08005 * 125.97880 * 180.27241 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2252 -2.6239 8 7 4.1535 -1.3343 -0.1824 9 6 5.3942 -0.9858 0.2807 10 1 5.9385 -0.1791 -0.1879 11 6 5.9524 -1.6691 1.3523 12 7 5.2867 -2.6486 1.9268 13 14 7.6445 -1.1932 1.9844 14 1 8.0079 -2.0645 3.1307 15 1 8.6438 -1.3612 0.8987 16 1 7.6271 0.2244 2.4262 17 7 2.0182 -0.6907 1.1962 18 6 2.1470 -0.0183 2.3572 19 8 1.8583 1.1614 2.4116 20 6 2.6389 -0.7149 3.5636 21 6 2.8238 -0.1446 4.8423 22 6 3.2886 -1.1604 5.6299 23 6 3.6381 -1.0747 7.0660 24 6 3.5535 0.0796 7.8874 25 6 3.9639 -0.2741 9.1194 26 7 4.2996 -1.5964 9.1024 27 6 4.7946 -2.3631 10.2484 28 6 4.0955 -2.0899 7.8499 29 7 3.3673 -2.2681 4.8392 30 1 3.6674 -3.1420 5.1340 31 7 2.9801 -1.9854 3.6475 32 1 -0.3635 -1.0277 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6054 -0.2618 -2.1369 36 1 1.7515 -1.7716 -1.2055 37 1 3.6263 -0.6888 -3.4657 38 1 5.1507 -1.1479 -2.6701 39 1 3.7721 -2.2742 -2.6699 40 1 3.6646 -2.0586 0.2387 41 1 4.4079 -2.8955 1.5989 42 1 2.2489 -1.6318 1.1527 43 1 2.6368 0.8778 5.1360 44 1 3.2220 1.0605 7.5804 45 1 4.0184 0.3793 9.9776 46 1 3.9522 -2.8019 10.7831 47 1 5.4548 -3.1561 9.8972 48 1 5.3449 -1.7018 10.9176 49 1 4.2691 -3.1076 7.5328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134556867.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:04 Heat of formation + Delta-G solvation = 81.848073 kcal Electronic energy + Delta-G solvation = -31007.991975 eV Core-core repulsion = 26972.298623 eV Total energy + Delta-G solvation = -4035.693352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.30830 -41.87691 -40.54890 -38.33843 -35.90109 -34.43546 -34.09041 -32.93793 -31.78467 -31.40101 -29.92029 -29.33232 -27.64243 -26.96950 -25.35593 -25.22735 -23.12850 -22.17345 -21.74761 -21.40836 -20.80657 -20.49326 -19.25821 -18.98564 -17.95272 -17.23741 -16.92311 -16.67011 -16.49784 -16.02475 -15.78728 -15.50986 -15.38165 -15.10483 -14.83764 -14.58737 -14.42760 -14.31269 -13.98749 -13.65971 -13.50761 -13.36152 -13.29079 -13.19112 -13.08169 -12.86347 -12.83500 -12.72668 -12.51971 -12.18213 -11.89435 -11.77859 -11.59962 -11.56496 -11.04949 -11.03664 -10.82023 -10.69369 -10.21907 -9.81799 -9.30415 -8.80396 -8.66951 -8.09117 -5.00157 0.66445 0.87787 1.49695 1.52428 1.61758 1.74831 2.02799 2.07890 2.40995 2.42275 2.69894 2.74083 3.57182 3.62321 3.79413 3.86292 3.93672 4.10187 4.12431 4.15513 4.30028 4.32603 4.35947 4.50783 4.51552 4.60291 4.66716 4.73751 4.76722 4.79207 4.81757 4.87028 4.91455 5.02642 5.06524 5.10453 5.14879 5.33565 5.36690 5.41960 5.51720 5.57257 5.71857 5.79459 5.86286 6.15758 6.28844 6.46856 6.63035 6.80593 7.13839 7.35509 7.39809 8.22364 8.35405 9.40520 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.003584 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.681742 B = 7809.759918 C = 9438.204423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.143 3.857 3 H 0.057 0.943 4 C -0.119 4.119 5 C 0.166 3.834 6 H 0.024 0.976 7 C -0.151 4.151 8 N -0.729 5.729 9 C -0.335 4.335 10 H 0.038 0.962 11 C -0.078 4.078 12 N -0.934 5.934 13 Si 1.104 2.896 14 H -0.291 1.291 15 H -0.287 1.287 16 H -0.305 1.305 17 N -0.681 5.681 18 C 0.606 3.394 19 O -0.588 6.588 20 C -0.043 4.043 21 C -0.203 4.203 22 C 0.100 3.900 23 C -0.137 4.137 24 C -0.201 4.201 25 C -0.002 4.002 26 N -0.445 5.445 27 C 0.066 3.934 28 C 0.002 3.998 29 N -0.363 5.363 30 H 0.451 0.549 31 N -0.217 5.217 32 H 0.067 0.933 33 H 0.039 0.961 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.026 0.974 39 H 0.047 0.953 40 H 0.360 0.640 41 H 0.254 0.746 42 H 0.402 0.598 43 H 0.151 0.849 44 H 0.138 0.862 45 H 0.200 0.800 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.104 0.896 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -2.068 13.036 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.039 3.961 3 H 0.075 0.925 4 C -0.157 4.157 5 C 0.058 3.942 6 H 0.042 0.958 7 C -0.211 4.211 8 N -0.374 5.374 9 C -0.467 4.467 10 H 0.056 0.944 11 C -0.275 4.275 12 N -0.579 5.579 13 Si 0.935 3.065 14 H -0.217 1.217 15 H -0.213 1.213 16 H -0.234 1.234 17 N -0.331 5.331 18 C 0.392 3.608 19 O -0.468 6.468 20 C -0.203 4.203 21 C -0.232 4.232 22 C -0.025 4.025 23 C -0.145 4.145 24 C -0.226 4.226 25 C -0.132 4.132 26 N -0.119 5.119 27 C -0.074 4.074 28 C -0.132 4.132 29 N -0.079 5.079 30 H 0.297 0.703 31 N -0.054 5.054 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.194 0.806 41 H 0.066 0.934 42 H 0.240 0.760 43 H 0.169 0.831 44 H 0.155 0.845 45 H 0.217 0.783 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.123 0.877 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -5.300 -2.559 13.712 14.922 hybrid contribution -0.563 0.331 -0.697 0.955 sum -5.863 -2.229 13.015 14.447 Atomic orbital electron populations 1.22105 0.93433 1.02743 1.02577 1.21029 0.94671 0.96271 0.84105 0.92480 1.22139 0.94818 1.01430 0.97355 1.20418 0.92088 0.94156 0.87579 0.95830 1.22243 0.99931 1.00711 0.98183 1.42433 1.18055 1.40291 1.36626 1.19934 0.95795 1.15980 1.14973 0.94351 1.26217 1.07146 0.97892 0.96223 1.70816 1.14096 1.29915 1.43121 0.82884 0.73679 0.74319 0.75624 1.21687 1.21346 1.23353 1.45862 1.64668 1.14046 1.08534 1.17062 0.76052 0.85174 0.82521 1.90640 1.54057 1.16340 1.85801 1.21706 1.10508 0.92174 0.95864 1.21524 1.09668 1.00356 0.91637 1.19381 1.03973 0.87184 0.91918 1.17439 1.11982 0.96640 0.88469 1.21024 1.09541 0.98495 0.93507 1.22197 1.06055 0.85190 0.99734 1.44159 1.49111 1.09324 1.09283 1.22382 1.01249 0.97347 0.86422 1.22039 1.06935 0.99446 0.84805 1.43374 1.47539 1.11973 1.05043 0.70291 1.73504 1.12896 1.16569 1.02385 0.91400 0.94139 0.89055 0.86879 0.90711 0.91021 0.95522 0.93414 0.80600 0.93443 0.76047 0.83099 0.84459 0.78326 0.89298 0.88758 0.87740 0.80041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 9.48 71.98 0.68 -3.50 16 2 C 0.14 5.02 2.57 44.99 0.12 5.13 16 3 H 0.06 2.31 7.58 -2.39 -0.02 2.29 16 4 C -0.12 -3.65 4.43 30.59 0.14 -3.51 16 5 C 0.17 6.61 2.89 44.99 0.13 6.74 16 6 H 0.02 1.05 8.08 -2.39 -0.02 1.03 16 7 C -0.15 -5.32 9.49 71.98 0.68 -4.63 16 8 N -0.73 -35.58 3.84 -322.95 -1.24 -36.82 16 9 C -0.33 -19.08 9.93 84.03 0.83 -18.25 16 10 H 0.04 2.28 7.83 -2.91 -0.02 2.26 16 11 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 12 N -0.93 -53.47 13.05 21.65 0.28 -53.19 16 13 Si 1.10 55.11 29.92 68.60 2.05 57.16 16 14 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 16 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 17 N -0.68 -28.17 3.80 -445.51 -1.69 -29.86 16 18 C 0.61 28.67 7.79 86.75 0.68 29.34 16 19 O -0.59 -30.08 16.58 -3.93 -0.07 -30.14 16 20 C -0.04 -1.97 7.11 42.39 0.30 -1.67 16 21 C -0.20 -8.59 10.57 22.64 0.24 -8.35 16 22 C 0.10 3.68 7.13 40.69 0.29 3.97 16 23 C -0.14 -4.06 6.12 -20.24 -0.12 -4.19 16 24 C -0.20 -5.29 10.65 22.35 0.24 -5.05 16 25 C 0.00 -0.04 11.40 83.14 0.95 0.91 16 26 N -0.44 -7.75 3.14 -547.03 -1.72 -9.47 16 27 C 0.07 0.50 11.10 127.77 1.42 1.92 16 28 C 0.00 0.04 11.40 83.54 0.95 0.99 16 29 N -0.36 -13.38 6.90 -48.51 -0.33 -13.71 16 30 H 0.45 13.61 8.96 -220.00 -1.97 11.64 16 31 N -0.22 -9.43 10.93 -48.33 -0.53 -9.96 16 32 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.36 17.77 4.54 -92.71 -0.42 17.34 16 41 H 0.25 14.43 6.47 -92.71 -0.60 13.83 16 42 H 0.40 16.96 6.22 -92.71 -0.58 16.39 16 43 H 0.15 6.13 8.06 -2.91 -0.02 6.11 16 44 H 0.14 3.57 8.06 -2.91 -0.02 3.54 16 45 H 0.20 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.18 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -78.98 408.49 2.93 -76.06 By element: Atomic # 1 Polarization: 55.93 SS G_CDS: -1.82 Total: 54.11 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 7.99 Total: -4.17 kcal Atomic # 7 Polarization: -147.79 SS G_CDS: -5.23 Total: -153.02 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.07 Total: -30.14 kcal Atomic # 14 Polarization: 55.11 SS G_CDS: 2.05 Total: 57.16 kcal Total: -78.98 2.93 -76.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134556867.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.905 kcal (2) G-P(sol) polarization free energy of solvation -78.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds