Wall clock time and date at job start Wed Apr 1 2020 04:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46901 * 2 1 4 4 C 1.52993 * 109.47133 * 240.00061 * 2 1 3 5 5 C 1.52998 * 109.47302 * 175.00153 * 4 2 1 6 6 H 1.09001 * 109.46926 * 54.99752 * 5 4 2 7 7 C 1.53004 * 109.47110 * 174.99777 * 5 4 2 8 8 N 1.46504 * 109.46864 * 294.99860 * 5 4 2 9 9 C 1.34774 * 119.99920 * 155.00185 * 8 5 4 10 10 O 1.21660 * 119.99977 * 359.97438 * 9 8 5 11 11 C 1.47015 * 120.00199 * 180.02562 * 9 8 5 12 12 C 1.41370 * 126.48217 * 0.02562 * 11 9 8 13 13 N 1.30362 * 108.16243 * 180.02562 * 12 11 9 14 14 N 1.39907 * 109.14416 * 0.02562 * 13 12 11 15 15 C 1.46502 * 125.75574 * 179.97438 * 14 13 12 16 16 C 1.34741 * 108.48627 * 359.72244 * 14 13 12 17 17 N 1.38987 * 126.41317 * 180.30319 * 16 14 13 18 18 C 1.36729 * 125.69216 * 134.84114 * 17 16 14 19 19 C 1.34786 * 108.18715 * 179.86925 * 18 17 16 20 20 C 1.41023 * 107.50371 * 0.39525 * 19 18 17 21 21 C 1.34786 * 107.50478 * 359.75164 * 20 19 18 22 22 N 1.46493 * 109.46887 * 119.99683 * 2 1 3 23 23 C 1.36936 * 120.00314 * 274.99849 * 22 2 1 24 24 H 1.08001 * 120.00159 * 0.02562 * 23 22 2 25 25 C 1.38811 * 119.99842 * 180.02562 * 23 22 2 26 26 N 1.31624 * 119.99540 * 179.72505 * 25 23 22 27 27 Si 1.86800 * 120.00451 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.46758 * 269.72270 * 27 25 23 29 29 H 1.48499 * 109.47026 * 29.72118 * 27 25 23 30 30 H 1.48496 * 109.47474 * 149.72153 * 27 25 23 31 31 H 1.08997 * 109.47326 * 300.00178 * 1 2 3 32 32 H 1.09003 * 109.47067 * 60.00275 * 1 2 3 33 33 H 1.08995 * 109.47185 * 180.02562 * 1 2 3 34 34 H 1.09006 * 109.47383 * 294.99883 * 4 2 1 35 35 H 1.09007 * 109.47501 * 54.99867 * 4 2 1 36 36 H 1.08992 * 109.47192 * 299.99633 * 7 5 4 37 37 H 1.09001 * 109.47246 * 60.00170 * 7 5 4 38 38 H 1.09008 * 109.46288 * 179.97438 * 7 5 4 39 39 H 0.97001 * 119.99979 * 334.99667 * 8 5 4 40 40 H 1.08001 * 125.92318 * 0.02562 * 12 11 9 41 41 H 1.09008 * 109.47104 * 90.01795 * 15 14 13 42 42 H 1.08994 * 109.47196 * 210.01890 * 15 14 13 43 43 H 1.08998 * 109.46830 * 330.02523 * 15 14 13 44 44 H 1.07998 * 125.90522 * 0.02562 * 18 17 16 45 45 H 1.08005 * 126.24834 * 180.18612 * 19 18 17 46 46 H 1.08000 * 126.24660 * 179.78272 * 20 19 18 47 47 H 1.07991 * 125.90922 * 179.97438 * 21 20 19 48 48 H 0.97000 * 120.00040 * 94.99981 * 22 2 1 49 49 H 0.96999 * 119.99889 * 180.27497 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3867 7 6 4.0851 -1.4384 -2.4924 8 7 3.9480 0.7894 -1.4924 9 6 5.1612 1.2135 -1.0867 10 8 5.9380 0.4317 -0.5717 11 6 5.5455 2.6213 -1.2656 12 6 4.7550 3.6416 -1.8423 13 7 5.4429 4.7488 -1.8224 14 7 6.6918 4.5027 -1.2417 15 6 7.7518 5.4934 -1.0389 16 6 6.7530 3.2019 -0.8955 17 7 7.8241 2.5603 -0.2848 18 6 7.7390 1.6936 0.7693 19 6 8.9848 1.2799 1.0753 20 6 9.8741 1.9186 0.1866 21 6 9.1392 2.6952 -0.6341 22 7 2.0183 -0.6905 1.1962 23 6 2.1491 -0.0074 2.3757 24 1 1.8919 1.0404 2.4243 25 6 2.6123 -0.6617 3.5090 26 7 2.7431 -0.0037 4.6414 27 14 3.0578 -2.4738 3.4249 28 1 1.8628 -3.2929 3.7507 29 1 3.5267 -2.8052 2.0554 30 1 4.1381 -2.7639 4.4016 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 1.7517 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1370 36 1 3.8001 -2.4819 -2.3594 37 1 3.6546 -1.0594 -3.4194 38 1 5.1715 -1.3610 -2.5385 39 1 3.3285 1.4129 -1.9028 40 1 3.7546 3.5243 -2.2320 41 1 7.6286 5.9627 -0.0628 42 1 8.7230 5.0010 -1.0854 43 1 7.6922 6.2537 -1.8176 44 1 6.8305 1.3907 1.2685 45 1 9.2532 0.5884 1.8604 46 1 10.9480 1.8056 0.1668 47 1 9.5227 3.3169 -1.4295 48 1 2.2490 -1.6317 1.1527 49 1 3.0706 -0.4598 5.4323 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135148815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:34 Heat of formation + Delta-G solvation = 117.005156 kcal Electronic energy + Delta-G solvation = -31365.268160 eV Core-core repulsion = 27331.099334 eV Total energy + Delta-G solvation = -4034.168826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.21898 -40.53431 -39.22629 -36.86610 -34.54111 -33.96773 -32.76068 -32.10474 -30.87291 -29.23280 -28.89651 -28.65323 -27.32191 -26.37556 -23.50484 -23.15847 -22.07875 -21.45982 -20.54162 -20.16732 -19.75552 -19.51096 -18.50151 -17.58620 -16.93745 -16.17257 -15.84234 -15.37027 -14.81602 -14.71263 -14.49301 -14.21490 -14.16039 -13.99166 -13.63648 -13.60777 -13.23610 -13.07497 -12.94942 -12.74676 -12.59510 -12.37342 -12.25384 -12.06145 -12.00510 -11.94563 -11.66996 -11.27005 -11.18359 -10.89824 -10.63670 -10.44653 -10.23871 -10.08758 -9.91966 -9.59844 -9.52078 -9.19257 -8.86684 -8.72696 -8.37121 -8.10829 -7.19788 -5.70093 -3.04728 0.95983 1.68271 1.98425 2.40320 2.85765 3.12921 3.43991 3.45309 3.47171 3.52168 3.62221 4.10601 4.62822 4.66408 4.69484 4.78588 4.86258 5.02751 5.04966 5.09618 5.26136 5.29130 5.37941 5.43595 5.56364 5.56990 5.63152 5.69348 5.80479 5.86033 5.91298 6.04023 6.06743 6.21438 6.25042 6.29814 6.30317 6.32328 6.35773 6.46059 6.59174 6.78473 6.88210 6.93474 7.01521 7.07813 7.28287 7.41120 7.82631 8.05320 8.48674 8.58567 9.27614 10.00601 10.19819 11.48507 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009851 B = 0.004012 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2841.613618 B = 6977.617870 C = 8035.954943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.177 3.823 3 H 0.055 0.945 4 C -0.135 4.135 5 C 0.147 3.853 6 H 0.101 0.899 7 C -0.161 4.161 8 N -0.710 5.710 9 C 0.593 3.407 10 O -0.532 6.532 11 C -0.279 4.279 12 C 0.096 3.904 13 N -0.278 5.278 14 N -0.365 5.365 15 C 0.089 3.911 16 C 0.360 3.640 17 N -0.392 5.392 18 C 0.072 3.928 19 C -0.208 4.208 20 C -0.167 4.167 21 C -0.046 4.046 22 N -0.745 5.745 23 C -0.236 4.236 24 H 0.087 0.913 25 C 0.006 3.994 26 N -0.936 5.936 27 Si 0.882 3.118 28 H -0.287 1.287 29 H -0.276 1.276 30 H -0.292 1.292 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.393 0.607 40 H 0.198 0.802 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.174 0.826 45 H 0.144 0.856 46 H 0.140 0.860 47 H 0.159 0.841 48 H 0.360 0.640 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.754 7.787 -17.496 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.173 4.173 5 C 0.043 3.957 6 H 0.119 0.881 7 C -0.220 4.220 8 N -0.361 5.361 9 C 0.380 3.620 10 O -0.409 6.409 11 C -0.295 4.295 12 C -0.092 4.092 13 N -0.098 5.098 14 N -0.147 5.147 15 C -0.051 4.051 16 C 0.137 3.863 17 N -0.071 5.071 18 C -0.054 4.054 19 C -0.231 4.231 20 C -0.193 4.193 21 C -0.169 4.169 22 N -0.388 5.388 23 C -0.366 4.366 24 H 0.105 0.895 25 C -0.190 4.190 26 N -0.584 5.584 27 Si 0.712 3.288 28 H -0.214 1.214 29 H -0.202 1.202 30 H -0.219 1.219 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.227 0.773 40 H 0.215 0.785 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.192 0.808 45 H 0.162 0.838 46 H 0.158 0.842 47 H 0.176 0.824 48 H 0.192 0.808 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.214 8.893 -17.361 21.573 hybrid contribution -0.031 -1.753 0.104 1.756 sum 9.183 7.141 -17.257 20.812 Atomic orbital electron populations 1.22426 0.99048 1.00807 1.00302 1.20194 0.91689 0.95867 0.85516 0.92733 1.22221 0.93864 1.02117 0.99126 1.20979 0.94900 0.80213 0.99644 0.88123 1.22192 1.01694 0.99950 0.98133 1.45655 1.16040 1.11405 1.62957 1.16890 0.82004 0.85351 0.77778 1.90838 1.50898 1.55664 1.43497 1.19978 0.95951 0.96570 1.17021 1.23943 0.99729 0.88791 0.96700 1.77242 0.90048 1.22556 1.19919 1.48566 1.13678 1.05311 1.47182 1.22151 0.87435 0.91390 1.04155 1.17875 0.89233 0.83918 0.95266 1.40586 1.03371 1.36027 1.27112 1.22220 1.00430 0.93412 0.89359 1.20989 0.91905 1.05994 1.04259 1.20959 0.99104 1.00862 0.98327 1.21763 0.81469 1.08525 1.05131 1.42771 1.79564 1.09344 1.07137 1.18996 1.36702 0.95370 0.85540 0.89521 1.24625 1.01442 0.97325 0.95594 1.69701 1.52775 1.35477 1.00421 0.86585 0.77951 0.87042 0.77188 1.21366 1.20189 1.21855 0.92462 0.94364 0.93664 0.90761 0.91546 0.91936 0.92979 0.92411 0.77330 0.78531 0.89836 0.88997 0.88335 0.80839 0.83848 0.84189 0.82387 0.80764 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 9.49 37.16 0.35 -2.37 16 2 C 0.18 3.13 2.84 -67.93 -0.19 2.94 16 3 H 0.05 1.01 7.56 -51.93 -0.39 0.62 16 4 C -0.13 -1.86 4.29 -26.74 -0.11 -1.98 16 5 C 0.15 2.21 2.52 -67.93 -0.17 2.04 16 6 H 0.10 1.98 7.05 -51.93 -0.37 1.61 16 7 C -0.16 -2.08 9.48 37.16 0.35 -1.73 16 8 N -0.71 -9.94 4.44 -55.01 -0.24 -10.18 16 9 C 0.59 9.85 7.74 -12.70 -0.10 9.75 16 10 O -0.53 -10.66 13.00 5.22 0.07 -10.59 16 11 C -0.28 -4.09 6.13 -104.86 -0.64 -4.73 16 12 C 0.10 1.13 11.49 -16.98 -0.20 0.94 16 13 N -0.28 -3.49 12.48 30.86 0.39 -3.11 16 14 N -0.37 -4.44 3.99 -66.65 -0.27 -4.71 16 15 C 0.09 0.70 11.30 59.85 0.68 1.38 16 16 C 0.36 5.22 7.11 -153.05 -1.09 4.13 16 17 N -0.39 -5.78 2.79 -62.23 -0.17 -5.95 16 18 C 0.07 1.20 8.95 -16.59 -0.15 1.05 16 19 C -0.21 -3.09 10.86 -39.75 -0.43 -3.52 16 20 C -0.17 -2.09 10.86 -39.75 -0.43 -2.52 16 21 C -0.05 -0.55 9.93 -16.59 -0.16 -0.72 16 22 N -0.74 -17.01 4.30 -53.43 -0.23 -17.24 16 23 C -0.24 -6.58 10.41 -15.06 -0.16 -6.73 16 24 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 25 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 26 N -0.94 -29.67 13.97 55.49 0.78 -28.89 16 27 Si 0.88 22.59 27.74 -169.99 -4.72 17.87 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 H -0.28 -6.68 6.51 56.52 0.37 -6.31 16 30 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 39 H 0.39 4.25 7.55 -40.82 -0.31 3.94 16 40 H 0.20 1.54 7.50 -52.49 -0.39 1.15 16 41 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.09 0.60 5.41 -51.93 -0.28 0.32 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.17 3.31 7.14 -52.49 -0.37 2.94 16 45 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 46 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 47 H 0.16 1.40 6.91 -52.49 -0.36 1.04 16 48 H 0.36 8.23 5.65 -40.82 -0.23 8.00 16 49 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -35.99 401.02 -8.28 -44.28 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -7.37 Total: 14.47 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.55 Total: -2.00 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: 0.25 Total: -70.08 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.72 Total: 17.87 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.99 -8.28 -44.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135148815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.282 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds