Wall clock time and date at job start Wed Apr 1 2020 04:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.34774 * 120.00444 * 204.99889 * 8 5 4 10 10 O 1.21282 * 119.99907 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00466 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47708 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47416 * 180.02562 * 12 11 9 14 14 N 1.30156 * 124.94306 * 304.68760 * 13 12 11 15 15 C 1.35603 * 109.59067 * 179.86730 * 14 13 12 16 16 C 1.39516 * 134.57752 * 180.10666 * 15 14 13 17 17 N 1.31666 * 120.12043 * 180.31624 * 16 15 14 18 18 C 1.32254 * 122.37823 * 359.97438 * 17 16 15 19 19 C 1.36815 * 121.42320 * 0.02562 * 18 17 16 20 20 C 1.39031 * 118.91109 * 359.96446 * 19 18 17 21 21 N 1.36171 * 124.94605 * 124.99828 * 13 12 11 22 22 H 0.97001 * 126.33319 * 359.97258 * 21 13 12 23 23 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 24 24 C 1.36934 * 119.99539 * 274.99977 * 23 2 1 25 25 H 1.07998 * 120.00501 * 359.97438 * 24 23 2 26 26 C 1.38817 * 119.99782 * 180.02562 * 24 23 2 27 27 N 1.31620 * 119.99787 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00061 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.47222 * 59.99661 * 28 26 24 30 30 H 1.48493 * 109.47343 * 179.97438 * 28 26 24 31 31 H 1.48505 * 109.47056 * 299.99729 * 28 26 24 32 32 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 33 33 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 35 35 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 36 36 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 37 37 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 38 38 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 39 39 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 40 40 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 41 41 H 1.09004 * 109.47221 * 300.00615 * 11 9 8 42 42 H 1.09002 * 109.47090 * 59.99722 * 11 9 8 43 43 H 1.09003 * 109.46561 * 299.99877 * 12 11 9 44 44 H 1.08993 * 109.47324 * 59.99633 * 12 11 9 45 45 H 1.07995 * 119.93905 * 0.33245 * 16 15 14 46 46 H 1.08002 * 119.28519 * 180.02562 * 18 17 16 47 47 H 1.07996 * 120.54144 * 180.02562 * 19 18 17 48 48 H 0.96993 * 119.99992 * 94.99462 * 23 2 1 49 49 H 0.97005 * 119.99558 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9912 0.2732 10 8 5.9859 -0.0854 -0.2530 11 6 5.9807 -1.7331 1.4365 12 6 7.3598 -1.1498 1.7509 13 6 7.9660 -1.8922 2.9138 14 7 7.4038 -2.0405 4.0783 15 6 8.2187 -2.7608 4.8882 16 6 8.1381 -3.2149 6.2050 17 7 9.1282 -3.9087 6.7263 18 6 10.2224 -4.2037 6.0445 19 6 10.3857 -3.7989 4.7478 20 6 9.3743 -3.0626 4.1412 21 7 9.1843 -2.5005 2.9012 22 1 9.8033 -2.5318 2.1551 23 7 2.0184 -0.6907 1.1962 24 6 2.1491 -0.0076 2.3757 25 1 1.8927 1.0403 2.4242 26 6 2.6123 -0.6619 3.5090 27 7 2.9254 -1.9390 3.4498 28 14 2.7914 0.2700 5.1179 29 1 1.4691 0.8069 5.5289 30 1 3.3002 -0.6484 6.1680 31 1 3.7466 1.3924 4.9362 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.7515 -1.7715 -1.2057 36 1 1.6053 -0.2617 -2.1370 37 1 3.6262 -0.6886 -3.4658 38 1 5.1508 -1.1485 -2.6699 39 1 3.7721 -2.2741 -2.6701 40 1 3.6647 -2.0585 0.2385 41 1 5.3355 -1.6301 2.3090 42 1 6.0815 -2.7882 1.1818 43 1 8.0052 -1.2526 0.8785 44 1 7.2586 -0.0950 2.0057 45 1 7.2620 -2.9970 6.7976 46 1 11.0039 -4.7765 6.5216 47 1 11.2849 -4.0481 4.2042 48 1 2.2490 -1.6319 1.1525 49 1 3.2487 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135885526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:50 Heat of formation + Delta-G solvation = 47.142159 kcal Electronic energy + Delta-G solvation = -30681.634536 eV Core-core repulsion = 26644.436223 eV Total energy + Delta-G solvation = -4037.198313 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.38762 -39.36173 -38.56403 -36.84779 -34.22370 -33.52734 -33.09470 -32.19658 -30.99202 -30.56078 -29.28379 -28.46071 -26.34645 -25.41624 -23.58439 -23.15119 -22.69370 -21.30052 -20.47628 -20.20696 -19.38206 -18.30275 -17.59403 -17.11309 -16.46188 -15.89481 -15.86625 -15.43192 -14.94282 -14.78292 -14.59020 -14.31976 -13.88826 -13.79472 -13.59402 -13.27276 -13.11503 -12.80552 -12.65615 -12.54340 -12.26210 -12.10893 -11.83541 -11.78349 -11.67559 -11.59441 -11.02963 -10.90019 -10.76489 -10.70625 -10.66026 -10.34658 -10.19818 -10.09907 -9.86705 -9.62428 -9.60298 -9.22755 -9.02596 -8.88464 -8.33741 -8.28726 -6.88444 -5.72765 -2.99223 0.72817 1.38027 2.65700 2.72455 3.33526 3.52123 3.58387 3.61022 3.83709 3.90559 4.06629 4.37929 4.52226 4.67439 4.91288 4.98997 5.04700 5.11366 5.29625 5.33413 5.37684 5.43023 5.50430 5.59473 5.63545 5.68823 5.72011 5.78913 5.90328 5.98498 6.02545 6.03204 6.16094 6.20605 6.26357 6.29837 6.35795 6.43963 6.52173 6.56622 6.62752 6.72448 6.88510 7.08130 7.14842 7.21521 7.77015 7.77131 8.03700 8.21702 8.46573 8.91733 9.58597 10.10463 10.46511 11.49443 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.003419 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.184254 B = 8187.807608 C =10117.011695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.170 3.830 3 H 0.047 0.953 4 C -0.133 4.133 5 C 0.150 3.850 6 H 0.082 0.918 7 C -0.162 4.162 8 N -0.695 5.695 9 C 0.533 3.467 10 O -0.572 6.572 11 C -0.137 4.137 12 C -0.023 4.023 13 C 0.298 3.702 14 N -0.456 5.456 15 C 0.000 4.000 16 C 0.177 3.823 17 N -0.490 5.490 18 C 0.089 3.911 19 C -0.163 4.163 20 C 0.071 3.929 21 N -0.594 5.594 22 H 0.423 0.577 23 N -0.716 5.716 24 C -0.236 4.236 25 H 0.065 0.935 26 C -0.002 4.002 27 N -0.929 5.929 28 Si 0.899 3.101 29 H -0.292 1.292 30 H -0.289 1.289 31 H -0.288 1.288 32 H 0.034 0.966 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.406 0.594 41 H 0.138 0.862 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.167 0.833 46 H 0.158 0.842 47 H 0.130 0.870 48 H 0.377 0.623 49 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.260 -4.501 -6.873 13.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.065 0.935 4 C -0.172 4.172 5 C 0.044 3.956 6 H 0.100 0.900 7 C -0.220 4.220 8 N -0.346 5.346 9 C 0.320 3.680 10 O -0.452 6.452 11 C -0.178 4.178 12 C -0.063 4.063 13 C 0.031 3.969 14 N -0.176 5.176 15 C -0.122 4.122 16 C 0.010 3.990 17 N -0.201 5.201 18 C -0.061 4.061 19 C -0.186 4.186 20 C -0.047 4.047 21 N -0.205 5.205 22 H 0.262 0.738 23 N -0.359 5.359 24 C -0.368 4.368 25 H 0.083 0.917 26 C -0.199 4.199 27 N -0.577 5.577 28 Si 0.730 3.270 29 H -0.219 1.219 30 H -0.215 1.215 31 H -0.215 1.215 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.244 0.756 41 H 0.156 0.844 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.124 0.876 45 H 0.184 0.816 46 H 0.176 0.824 47 H 0.148 0.852 48 H 0.212 0.788 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.881 -3.782 -5.933 12.958 hybrid contribution 1.025 -0.219 -0.319 1.096 sum 11.906 -4.001 -6.253 14.031 Atomic orbital electron populations 1.22431 0.99454 1.00661 0.99853 1.20264 0.91616 0.95698 0.86441 0.93516 1.22205 0.94033 1.01581 0.99398 1.20784 0.92527 0.97285 0.84959 0.89980 1.22205 1.01612 1.00781 0.97404 1.45942 1.17789 1.37513 1.33397 1.20239 0.81388 0.83174 0.83218 1.90606 1.62494 1.31730 1.60406 1.21608 0.96105 0.99401 1.00676 1.19944 0.95916 0.99613 0.90808 1.23999 0.82227 0.94736 0.95937 1.70581 1.28703 1.17881 1.00387 1.20309 0.92290 1.02539 0.97028 1.22250 0.96666 0.90693 0.89404 1.67729 1.01251 1.13685 1.37413 1.22097 0.95522 0.97904 0.90551 1.20651 0.98643 1.02398 0.96917 1.18978 0.98566 1.00015 0.87126 1.43091 1.18668 1.46442 1.12341 0.73751 1.42414 1.78076 1.10072 1.05329 1.19100 1.36632 0.93711 0.87308 0.91725 1.24534 1.02008 0.95892 0.97429 1.69527 1.50792 1.08219 1.29195 0.86404 0.77307 0.78920 0.84334 1.21927 1.21500 1.21465 0.94702 0.93660 0.92885 0.91811 0.90978 0.92239 0.92531 0.92904 0.75636 0.84380 0.89923 0.89662 0.87574 0.81612 0.82441 0.85163 0.78779 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.17 3.10 2.89 -67.93 -0.20 2.90 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.95 4.43 -26.73 -0.12 -2.07 16 5 C 0.15 2.30 2.57 -67.93 -0.17 2.13 16 6 H 0.08 1.45 7.58 -51.93 -0.39 1.05 16 7 C -0.16 -2.06 9.48 37.16 0.35 -1.71 16 8 N -0.69 -11.80 3.80 -53.81 -0.20 -12.00 16 9 C 0.53 9.66 7.79 -10.99 -0.09 9.57 16 10 O -0.57 -11.45 15.64 5.56 0.09 -11.36 16 11 C -0.14 -2.30 5.64 -27.89 -0.16 -2.46 16 12 C -0.02 -0.34 5.13 -27.88 -0.14 -0.48 16 13 C 0.30 4.46 7.37 -154.66 -1.14 3.32 16 14 N -0.46 -8.27 11.21 -8.20 -0.09 -8.36 16 15 C 0.00 0.00 7.28 -84.72 -0.62 -0.62 16 16 C 0.18 2.70 11.28 -17.15 -0.19 2.51 16 17 N -0.49 -6.89 10.33 -13.22 -0.14 -7.03 16 18 C 0.09 1.00 11.11 -17.89 -0.20 0.80 16 19 C -0.16 -1.76 10.09 -39.80 -0.40 -2.16 16 20 C 0.07 0.96 7.37 -84.05 -0.62 0.34 16 21 N -0.59 -7.00 6.21 -7.96 -0.05 -7.05 16 22 H 0.42 3.33 8.96 -40.82 -0.37 2.96 16 23 N -0.72 -15.77 3.84 -53.42 -0.21 -15.98 16 24 C -0.24 -6.08 9.93 -15.06 -0.15 -6.23 16 25 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 26 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 27 N -0.93 -24.80 12.78 55.49 0.71 -24.09 16 28 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 29 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 30 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 31 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.41 7.10 6.51 -40.82 -0.27 6.83 16 41 H 0.14 2.88 7.86 -51.93 -0.41 2.47 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 44 H 0.11 1.69 8.10 -51.93 -0.42 1.27 16 45 H 0.17 2.36 8.06 -52.49 -0.42 1.94 16 46 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 47 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 48 H 0.38 8.50 5.70 -40.82 -0.23 8.26 16 49 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -31.19 406.54 -9.92 -41.11 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -7.55 Total: 18.12 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -3.59 Total: 3.25 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: 0.02 Total: -74.51 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.19 -9.92 -41.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135885526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.257 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds