Wall clock time and date at job start Wed Apr 1 2020 04:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 H 1.09004 * 109.47346 * 305.00346 * 5 4 2 7 7 C 1.52997 * 109.47504 * 185.00270 * 5 4 2 8 8 N 1.46497 * 109.47195 * 64.99866 * 5 4 2 9 9 C 1.34774 * 120.00444 * 204.99889 * 8 5 4 10 10 O 1.21282 * 119.99907 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00466 * 180.02562 * 9 8 5 12 12 C 1.52999 * 109.47708 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47416 * 180.02562 * 12 11 9 14 14 N 1.30156 * 124.94306 * 304.68760 * 13 12 11 15 15 C 1.35603 * 109.59067 * 179.86730 * 14 13 12 16 16 C 1.39516 * 134.57752 * 180.10666 * 15 14 13 17 17 N 1.31666 * 120.12043 * 180.31624 * 16 15 14 18 18 C 1.32254 * 122.37823 * 359.97438 * 17 16 15 19 19 C 1.36815 * 121.42320 * 0.02562 * 18 17 16 20 20 C 1.39031 * 118.91109 * 359.96446 * 19 18 17 21 21 N 1.36171 * 124.94605 * 124.99828 * 13 12 11 22 22 H 0.97001 * 126.33319 * 359.97258 * 21 13 12 23 23 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 24 24 C 1.36934 * 119.99539 * 274.99977 * 23 2 1 25 25 H 1.07998 * 120.00501 * 359.97438 * 24 23 2 26 26 C 1.38817 * 119.99782 * 180.02562 * 24 23 2 27 27 N 1.31620 * 119.99787 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00061 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.47222 * 59.99661 * 28 26 24 30 30 H 1.48493 * 109.47343 * 179.97438 * 28 26 24 31 31 H 1.48505 * 109.47056 * 299.99729 * 28 26 24 32 32 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 33 33 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 35 35 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 36 36 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 37 37 H 1.09002 * 109.47016 * 59.99741 * 7 5 4 38 38 H 1.09000 * 109.47400 * 180.02562 * 7 5 4 39 39 H 1.09004 * 109.46881 * 300.00361 * 7 5 4 40 40 H 0.97001 * 119.99762 * 25.00311 * 8 5 4 41 41 H 1.09004 * 109.47221 * 300.00615 * 11 9 8 42 42 H 1.09002 * 109.47090 * 59.99722 * 11 9 8 43 43 H 1.09003 * 109.46561 * 299.99877 * 12 11 9 44 44 H 1.08993 * 109.47324 * 59.99633 * 12 11 9 45 45 H 1.07995 * 119.93905 * 0.33245 * 16 15 14 46 46 H 1.08002 * 119.28519 * 180.02562 * 18 17 16 47 47 H 1.07996 * 120.54144 * 180.02562 * 19 18 17 48 48 H 0.96993 * 119.99992 * 94.99462 * 23 2 1 49 49 H 0.97005 * 119.99558 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 1 3.8570 0.4358 -1.2678 7 6 4.0644 -1.2250 -2.6241 8 7 4.1536 -1.3342 -0.1825 9 6 5.3747 -0.9912 0.2732 10 8 5.9859 -0.0854 -0.2530 11 6 5.9807 -1.7331 1.4365 12 6 7.3598 -1.1498 1.7509 13 6 7.9660 -1.8922 2.9138 14 7 7.4038 -2.0405 4.0783 15 6 8.2187 -2.7608 4.8882 16 6 8.1381 -3.2149 6.2050 17 7 9.1282 -3.9087 6.7263 18 6 10.2224 -4.2037 6.0445 19 6 10.3857 -3.7989 4.7478 20 6 9.3743 -3.0626 4.1412 21 7 9.1843 -2.5005 2.9012 22 1 9.8033 -2.5318 2.1551 23 7 2.0184 -0.6907 1.1962 24 6 2.1491 -0.0076 2.3757 25 1 1.8927 1.0403 2.4242 26 6 2.6123 -0.6619 3.5090 27 7 2.9254 -1.9390 3.4498 28 14 2.7914 0.2700 5.1179 29 1 1.4691 0.8069 5.5289 30 1 3.3002 -0.6484 6.1680 31 1 3.7466 1.3924 4.9362 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0277 0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.7515 -1.7715 -1.2057 36 1 1.6053 -0.2617 -2.1370 37 1 3.6262 -0.6886 -3.4658 38 1 5.1508 -1.1485 -2.6699 39 1 3.7721 -2.2741 -2.6701 40 1 3.6647 -2.0585 0.2385 41 1 5.3355 -1.6301 2.3090 42 1 6.0815 -2.7882 1.1818 43 1 8.0052 -1.2526 0.8785 44 1 7.2586 -0.0950 2.0057 45 1 7.2620 -2.9970 6.7976 46 1 11.0039 -4.7765 6.5216 47 1 11.2849 -4.0481 4.2042 48 1 2.2490 -1.6319 1.1525 49 1 3.2487 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135885526.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:49 Heat of formation + Delta-G solvation = 26.972081 kcal Electronic energy + Delta-G solvation = -30682.509177 eV Core-core repulsion = 26644.436223 eV Total energy + Delta-G solvation = -4038.072953 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.45279 -40.75627 -39.59505 -38.30930 -35.78419 -34.71477 -34.26985 -33.93277 -32.16355 -31.79334 -30.49777 -30.05653 -27.57107 -26.64561 -25.50264 -24.17737 -23.75087 -22.53561 -21.68412 -21.61802 -20.81687 -19.31530 -19.03836 -18.67230 -17.78628 -17.22651 -16.92084 -16.65737 -16.51338 -16.27079 -15.57630 -15.55370 -15.40743 -15.24681 -15.01457 -14.54839 -14.31167 -14.10054 -14.01578 -13.83030 -13.50973 -13.28473 -13.25458 -13.13120 -12.93693 -12.84512 -12.75223 -12.54982 -12.27064 -12.15025 -12.13652 -11.91881 -11.66641 -11.54523 -11.36149 -11.23770 -10.81696 -10.67126 -10.63838 -10.04501 -9.74668 -9.36246 -8.76279 -7.80533 -5.01545 -0.29863 0.35373 1.46832 1.51886 1.55741 1.59603 1.68062 1.89362 2.56211 2.64963 2.85264 2.97710 3.38247 3.54424 3.55867 3.81596 3.90905 3.94792 4.04429 4.06137 4.12856 4.22770 4.28040 4.33906 4.44087 4.46536 4.57839 4.61891 4.75069 4.75157 4.87390 4.91092 4.94137 4.97132 5.04233 5.12273 5.17314 5.19345 5.20140 5.30193 5.41796 5.46305 5.58030 5.64979 5.67683 5.87213 6.26537 6.41544 6.70378 6.80194 7.01266 7.49200 7.52361 8.24276 8.51200 9.39443 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011379 B = 0.003419 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.184254 B = 8187.807608 C =10117.011695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.162 3.838 3 H 0.029 0.971 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.056 0.944 7 C -0.150 4.150 8 N -0.693 5.693 9 C 0.527 3.473 10 O -0.593 6.593 11 C -0.128 4.128 12 C -0.014 4.014 13 C 0.298 3.702 14 N -0.510 5.510 15 C -0.037 4.037 16 C 0.154 3.846 17 N -0.503 5.503 18 C 0.085 3.915 19 C -0.146 4.146 20 C 0.071 3.929 21 N -0.573 5.573 22 H 0.444 0.556 23 N -0.718 5.718 24 C -0.231 4.231 25 H 0.054 0.946 26 C -0.039 4.039 27 N -0.934 5.934 28 Si 0.934 3.066 29 H -0.289 1.289 30 H -0.300 1.300 31 H -0.296 1.296 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.066 0.934 40 H 0.404 0.596 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.157 0.843 46 H 0.198 0.802 47 H 0.175 0.825 48 H 0.375 0.625 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.660 -5.687 -9.234 16.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.054 3.946 3 H 0.047 0.953 4 C -0.158 4.158 5 C 0.041 3.959 6 H 0.075 0.925 7 C -0.209 4.209 8 N -0.343 5.343 9 C 0.315 3.685 10 O -0.476 6.476 11 C -0.169 4.169 12 C -0.053 4.053 13 C 0.030 3.970 14 N -0.231 5.231 15 C -0.158 4.158 16 C -0.013 4.013 17 N -0.213 5.213 18 C -0.064 4.064 19 C -0.169 4.169 20 C -0.048 4.048 21 N -0.186 5.186 22 H 0.287 0.713 23 N -0.361 5.361 24 C -0.363 4.363 25 H 0.072 0.928 26 C -0.234 4.234 27 N -0.584 5.584 28 Si 0.767 3.233 29 H -0.216 1.216 30 H -0.226 1.226 31 H -0.224 1.224 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.241 0.759 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.174 0.826 46 H 0.215 0.785 47 H 0.193 0.807 48 H 0.210 0.790 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.265 -4.957 -8.342 15.639 hybrid contribution 0.607 0.173 0.398 0.746 sum 12.871 -4.784 -7.944 15.864 Atomic orbital electron populations 1.22286 0.97942 1.00912 1.00305 1.20484 0.92566 0.94933 0.86656 0.95315 1.22118 0.93219 1.01965 0.98535 1.20919 0.93175 0.95991 0.85792 0.92544 1.22092 1.00784 1.01711 0.96265 1.46027 1.17346 1.37252 1.33687 1.20454 0.81734 0.82964 0.83348 1.90584 1.63140 1.32594 1.61268 1.21452 0.96507 1.00521 0.98409 1.19843 0.95377 0.98223 0.91877 1.23848 0.83197 0.94834 0.95155 1.70479 1.30866 1.19712 1.02074 1.20540 0.93727 1.03728 0.97804 1.22196 0.97364 0.92200 0.89563 1.67739 1.01887 1.13527 1.38157 1.22834 0.95224 0.97372 0.90971 1.21110 0.98997 1.00127 0.96658 1.19263 0.98283 1.00078 0.87139 1.42871 1.17902 1.45285 1.12588 0.71307 1.42462 1.78203 1.09922 1.05525 1.19188 1.35160 0.93348 0.88636 0.92789 1.24854 1.03232 0.96489 0.98817 1.69590 1.51727 1.08476 1.28603 0.85833 0.76850 0.77754 0.82846 1.21640 1.22642 1.22373 0.91312 0.93438 0.95389 0.90705 0.87539 0.89849 0.93841 0.91503 0.75911 0.88395 0.88224 0.86517 0.89503 0.82591 0.78481 0.80713 0.79035 0.94367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.16 5.75 2.89 44.99 0.13 5.88 16 3 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 4 C -0.12 -3.19 4.43 30.59 0.14 -3.06 16 5 C 0.15 4.29 2.57 44.99 0.12 4.40 16 6 H 0.06 1.97 7.58 -2.39 -0.02 1.95 16 7 C -0.15 -3.44 9.48 71.98 0.68 -2.75 16 8 N -0.69 -23.39 3.80 -442.55 -1.68 -25.07 16 9 C 0.53 19.36 7.79 87.66 0.68 20.04 16 10 O -0.59 -23.94 15.64 -3.03 -0.05 -23.99 16 11 C -0.13 -4.42 5.64 29.85 0.17 -4.25 16 12 C -0.01 -0.41 5.13 29.85 0.15 -0.25 16 13 C 0.30 9.03 7.37 137.86 1.02 10.04 16 14 N -0.51 -19.48 11.21 -179.84 -2.02 -21.50 16 15 C -0.04 -1.26 7.28 39.52 0.29 -0.98 16 16 C 0.15 4.93 11.28 85.03 0.96 5.88 16 17 N -0.50 -13.96 10.33 -195.75 -2.02 -15.98 16 18 C 0.09 1.70 11.11 84.30 0.94 2.64 16 19 C -0.15 -2.68 10.09 22.13 0.22 -2.46 16 20 C 0.07 1.82 7.37 39.10 0.29 2.10 16 21 N -0.57 -12.67 6.21 -179.10 -1.11 -13.78 16 22 H 0.44 5.77 8.96 -92.71 -0.83 4.94 16 23 N -0.72 -31.82 3.84 -322.93 -1.24 -33.06 16 24 C -0.23 -12.14 9.93 84.04 0.83 -11.30 16 25 H 0.05 2.92 7.83 -2.91 -0.02 2.90 16 26 C -0.04 -2.13 5.50 84.86 0.47 -1.67 16 27 N -0.93 -51.48 12.78 21.65 0.28 -51.21 16 28 Si 0.93 47.42 29.55 68.60 2.03 49.45 16 29 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 30 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 31 H -0.30 -15.29 7.11 99.48 0.71 -14.58 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.40 14.09 6.51 -92.71 -0.60 13.48 16 41 H 0.10 4.31 7.86 -2.39 -0.02 4.29 16 42 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.12 2.64 8.10 -2.39 -0.02 2.62 16 44 H 0.09 2.90 8.10 -2.39 -0.02 2.88 16 45 H 0.16 4.98 8.06 -2.91 -0.02 4.96 16 46 H 0.20 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.37 16.96 5.70 -92.71 -0.53 16.43 16 49 H 0.25 14.00 8.31 -92.70 -0.77 13.23 16 Total: -1.00 -71.60 406.54 0.97 -70.63 By element: Atomic # 1 Polarization: 45.51 SS G_CDS: -0.98 Total: 44.54 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: 7.76 Total: 19.98 kcal Atomic # 7 Polarization: -152.81 SS G_CDS: -7.80 Total: -160.60 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -71.60 0.97 -70.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135885526.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.601 kcal (2) G-P(sol) polarization free energy of solvation -71.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds