Wall clock time and date at job start Wed Apr 1 2020 04:10:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08998 * 109.46593 * 2 1
4 4 C 1.52999 * 109.47155 * 119.99967 * 2 1 3
5 5 C 1.52995 * 109.47075 * 185.00263 * 4 2 1
6 6 H 1.09007 * 109.47080 * 304.99674 * 5 4 2
7 7 C 1.53000 * 109.47023 * 185.00349 * 5 4 2
8 8 N 1.46499 * 109.47455 * 65.00270 * 5 4 2
9 9 C 1.34777 * 120.00199 * 205.00257 * 8 5 4
10 10 O 1.21283 * 119.99750 * 359.97438 * 9 8 5
11 11 C 1.50702 * 119.99928 * 180.27479 * 9 8 5
12 12 C 1.52996 * 109.47159 * 179.72352 * 11 9 8
13 13 C 1.50697 * 109.47491 * 179.97438 * 12 11 9
14 14 N 1.30158 * 124.94275 * 304.69537 * 13 12 11
15 15 C 1.35603 * 109.59065 * 179.86587 * 14 13 12
16 16 C 1.39522 * 134.57625 * 180.10543 * 15 14 13
17 17 N 1.31662 * 120.11938 * 180.30667 * 16 15 14
18 18 C 1.32252 * 122.37840 * 0.02562 * 17 16 15
19 19 C 1.36813 * 121.42358 * 0.02562 * 18 17 16
20 20 C 1.39041 * 118.91220 * 359.96821 * 19 18 17
21 21 N 1.36174 * 124.94757 * 124.99580 * 13 12 11
22 22 H 0.96991 * 126.32871 * 359.97438 * 21 13 12
23 23 N 1.46499 * 109.47167 * 240.00174 * 2 1 3
24 24 C 1.36945 * 119.99927 * 84.99995 * 23 2 1
25 25 H 1.08000 * 119.99664 * 0.02562 * 24 23 2
26 26 C 1.38807 * 119.99795 * 179.97438 * 24 23 2
27 27 N 1.31621 * 119.99699 * 180.02562 * 26 24 23
28 28 Si 1.86793 * 120.00231 * 359.97438 * 26 24 23
29 29 H 1.48502 * 109.47231 * 90.00119 * 28 26 24
30 30 H 1.48503 * 109.47487 * 210.00144 * 28 26 24
31 31 H 1.48499 * 109.47464 * 330.00144 * 28 26 24
32 32 H 1.09003 * 109.46811 * 60.00039 * 1 2 3
33 33 H 1.08997 * 109.46818 * 179.97438 * 1 2 3
34 34 H 1.08996 * 109.47411 * 299.99748 * 1 2 3
35 35 H 1.09000 * 109.46867 * 65.00330 * 4 2 1
36 36 H 1.09000 * 109.47154 * 305.00463 * 4 2 1
37 37 H 1.08998 * 109.47598 * 59.99967 * 7 5 4
38 38 H 1.09005 * 109.47473 * 179.97438 * 7 5 4
39 39 H 1.08998 * 109.46925 * 299.99562 * 7 5 4
40 40 H 0.97000 * 119.99484 * 24.99354 * 8 5 4
41 41 H 1.09004 * 109.46965 * 299.72211 * 11 9 8
42 42 H 1.08994 * 109.46990 * 59.72065 * 11 9 8
43 43 H 1.09004 * 109.47066 * 299.99797 * 12 11 9
44 44 H 1.09000 * 109.47234 * 59.99288 * 12 11 9
45 45 H 1.08002 * 119.93934 * 0.32731 * 16 15 14
46 46 H 1.07999 * 119.28690 * 180.02562 * 18 17 16
47 47 H 1.07999 * 120.54347 * 180.02562 * 19 18 17
48 48 H 0.96996 * 120.00072 * 264.99517 * 23 2 1
49 49 H 0.97001 * 119.99915 * 180.02562 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0401 -0.7212 1.2492
5 6 3.5648 -0.6132 1.3137
6 1 3.9954 -0.9922 0.3868
7 6 4.0852 -1.4383 2.4924
8 7 3.9480 0.7894 1.4925
9 6 5.1612 1.2137 1.0868
10 8 5.9359 0.4340 0.5740
11 6 5.5576 2.6552 1.2764
12 6 6.9746 2.8691 0.7406
13 6 7.3709 4.3107 0.9296
14 7 6.6987 5.3330 0.4855
15 6 7.3331 6.4800 0.8330
16 6 7.0801 7.8377 0.6348
17 7 7.9149 8.7408 1.1048
18 6 9.0093 8.4146 1.7719
19 6 9.3359 7.1077 2.0111
20 6 8.4932 6.1071 1.5399
21 7 8.4872 4.7334 1.5849
22 1 9.1551 4.1693 2.0049
23 7 2.0184 -0.6906 -1.1962
24 6 2.1492 -0.0073 -2.3758
25 1 1.8927 1.0406 -2.4241
26 6 2.6124 -0.6616 -3.5090
27 7 2.7386 -0.0048 -4.6426
28 14 3.0580 -2.4736 -3.4249
29 1 1.8614 -3.2930 -3.7442
30 1 4.1337 -2.7650 -4.4063
31 1 3.5332 -2.8036 -2.0572
32 1 -0.3633 0.5138 -0.8900
33 1 -0.3633 -1.0277 -0.0005
34 1 -0.3634 0.5138 0.8900
35 1 1.7517 -1.7715 1.2055
36 1 1.6054 -0.2618 2.1370
37 1 3.8002 -2.4819 2.3594
38 1 5.1716 -1.3617 2.5382
39 1 3.6546 -1.0593 3.4193
40 1 3.3284 1.4128 1.9029
41 1 4.8634 3.2972 0.7342
42 1 5.5290 2.9033 2.3373
43 1 7.6689 2.2271 1.2828
44 1 7.0033 2.6209 -0.3204
45 1 6.1976 8.1484 0.0953
46 1 9.6592 9.1967 2.1356
47 1 10.2330 6.8574 2.5578
48 1 2.2492 -1.6317 -1.1526
49 1 3.0619 -0.4620 -5.4347
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001135885528.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:10:59
Heat of formation + Delta-G solvation = 43.024660 kcal
Electronic energy + Delta-G solvation = -29546.598915 eV
Core-core repulsion = 25509.222054 eV
Total energy + Delta-G solvation = -4037.376861 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-42.69382 -39.73771 -38.83939 -37.07012 -34.63391 -33.92272 -33.45879 -32.14634
-31.28994 -30.83494 -29.58863 -29.18583 -26.46189 -25.83377 -23.45259 -23.28884
-22.97239 -21.55134 -20.83966 -20.20651 -19.81693 -18.58585 -17.96404 -17.61164
-16.88670 -16.15976 -16.14755 -15.72299 -15.42702 -14.88029 -14.76471 -14.58251
-14.21132 -14.13047 -13.72761 -13.55001 -13.32110 -13.08973 -12.87721 -12.63537
-12.55006 -12.38759 -12.22459 -12.08868 -11.97761 -11.69696 -11.43851 -11.21596
-11.12394 -10.91536 -10.65612 -10.49209 -10.47302 -10.26443 -9.94398 -9.89934
-9.64048 -9.52523 -9.31355 -8.87690 -8.79346 -8.58647 -7.20810 -5.70240
-3.05253 0.45425 1.11316 2.35628 2.39539 2.87691 3.36637 3.42684
3.44923 3.50573 3.61650 3.72845 4.10012 4.25925 4.61653 4.64188
4.65433 4.75231 4.80494 4.94781 4.99709 5.08121 5.12606 5.24536
5.28640 5.38191 5.45763 5.51372 5.60106 5.69578 5.76031 5.79443
5.81356 5.81744 5.86400 6.00559 6.01677 6.18700 6.22544 6.26714
6.32884 6.43350 6.53892 6.73844 6.83522 6.85213 7.00070 7.42789
7.71801 7.76257 8.05037 8.46342 8.48517 9.26909 9.99771 10.18720
11.48291
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.012238 B = 0.002350 C = 0.002213
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2287.362130 B =11912.257333 C =12650.140288
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.176 3.824
3 H 0.055 0.945
4 C -0.135 4.135
5 C 0.142 3.858
6 H 0.100 0.900
7 C -0.161 4.161
8 N -0.716 5.716
9 C 0.518 3.482
10 O -0.538 6.538
11 C -0.131 4.131
12 C -0.028 4.028
13 C 0.298 3.702
14 N -0.468 5.468
15 C -0.003 4.003
16 C 0.177 3.823
17 N -0.488 5.488
18 C 0.092 3.908
19 C -0.161 4.161
20 C 0.073 3.927
21 N -0.592 5.592
22 H 0.426 0.574
23 N -0.745 5.745
24 C -0.237 4.237
25 H 0.088 0.912
26 C 0.005 3.995
27 N -0.934 5.934
28 Si 0.882 3.118
29 H -0.286 1.286
30 H -0.292 1.292
31 H -0.277 1.277
32 H 0.057 0.943
33 H 0.044 0.956
34 H 0.037 0.963
35 H 0.073 0.927
36 H 0.066 0.934
37 H 0.062 0.938
38 H 0.056 0.944
39 H 0.051 0.949
40 H 0.397 0.603
41 H 0.111 0.889
42 H 0.090 0.910
43 H 0.092 0.908
44 H 0.113 0.887
45 H 0.168 0.832
46 H 0.160 0.840
47 H 0.133 0.867
48 H 0.359 0.641
49 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.416 9.438 20.934 25.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.067 3.933
3 H 0.073 0.927
4 C -0.173 4.173
5 C 0.038 3.962
6 H 0.118 0.882
7 C -0.219 4.219
8 N -0.367 5.367
9 C 0.304 3.696
10 O -0.415 6.415
11 C -0.172 4.172
12 C -0.067 4.067
13 C 0.031 3.969
14 N -0.189 5.189
15 C -0.124 4.124
16 C 0.009 3.991
17 N -0.198 5.198
18 C -0.057 4.057
19 C -0.184 4.184
20 C -0.045 4.045
21 N -0.203 5.203
22 H 0.265 0.735
23 N -0.388 5.388
24 C -0.367 4.367
25 H 0.106 0.894
26 C -0.191 4.191
27 N -0.582 5.582
28 Si 0.713 3.287
29 H -0.213 1.213
30 H -0.219 1.219
31 H -0.203 1.203
32 H 0.076 0.924
33 H 0.063 0.937
34 H 0.056 0.944
35 H 0.092 0.908
36 H 0.084 0.916
37 H 0.081 0.919
38 H 0.075 0.925
39 H 0.070 0.930
40 H 0.230 0.770
41 H 0.129 0.871
42 H 0.109 0.891
43 H 0.110 0.890
44 H 0.132 0.868
45 H 0.185 0.815
46 H 0.178 0.822
47 H 0.151 0.849
48 H 0.192 0.808
49 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 10.104 9.977 19.800 24.365
hybrid contribution 1.324 -2.209 0.897 2.728
sum 11.429 7.767 20.697 24.886
Atomic orbital electron populations
1.22424 0.99004 1.00799 1.00356 1.20201 0.91757 0.95880 0.85476
0.92670 1.22218 0.93835 1.02102 0.99180 1.21002 0.95045 0.80580
0.99582 0.88184 1.22187 1.01524 1.00067 0.98169 1.45930 1.16594
1.11482 1.62660 1.20343 0.81998 0.89673 0.77631 1.90722 1.51252
1.56665 1.42883 1.21529 0.97321 0.95092 1.03286 1.19966 0.96810
0.84442 1.05512 1.23896 0.83743 0.97409 0.91900 1.70451 1.29113
0.95946 1.23365 1.20277 0.94246 0.95283 1.02634 1.22247 0.97531
0.85002 0.94323 1.67735 1.04194 1.36978 1.10943 1.22144 0.94084
0.94049 0.95452 1.20707 1.00820 0.91871 1.05036 1.18986 0.99091
0.84358 1.02042 1.43066 1.23561 1.05235 1.48430 0.73475 1.42776
1.79577 1.09319 1.07162 1.19009 1.36722 0.95446 0.85523 0.89385
1.24641 1.01456 0.97329 0.95640 1.69699 1.52822 1.35453 1.00252
0.86579 0.77950 0.87086 0.77086 1.21333 1.21892 1.20297 0.92383
0.93682 0.94372 0.90822 0.91571 0.91917 0.92498 0.92966 0.76979
0.87060 0.89141 0.88963 0.86840 0.81531 0.82235 0.84949 0.80813
0.93187
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.72 9.49 37.16 0.35 -2.37 16
2 C 0.18 3.12 2.84 -67.93 -0.19 2.92 16
3 H 0.06 1.01 7.56 -51.93 -0.39 0.62 16
4 C -0.13 -1.84 4.29 -26.73 -0.11 -1.95 16
5 C 0.14 2.06 2.52 -67.93 -0.17 1.89 16
6 H 0.10 1.93 7.06 -51.93 -0.37 1.56 16
7 C -0.16 -1.94 9.48 37.16 0.35 -1.59 16
8 N -0.72 -9.19 4.45 -53.81 -0.24 -9.43 16
9 C 0.52 7.33 7.79 -10.98 -0.09 7.25 16
10 O -0.54 -9.85 15.65 5.55 0.09 -9.76 16
11 C -0.13 -1.38 5.64 -27.88 -0.16 -1.54 16
12 C -0.03 -0.29 5.13 -27.89 -0.14 -0.43 16
13 C 0.30 3.21 7.37 -154.66 -1.14 2.07 16
14 N -0.47 -6.18 11.21 -8.20 -0.09 -6.27 16
15 C 0.00 -0.04 7.28 -84.73 -0.62 -0.66 16
16 C 0.18 1.98 11.28 -17.15 -0.19 1.79 16
17 N -0.49 -5.31 10.33 -13.22 -0.14 -5.44 16
18 C 0.09 0.78 11.10 -17.89 -0.20 0.58 16
19 C -0.16 -1.29 10.09 -39.80 -0.40 -1.69 16
20 C 0.07 0.74 7.37 -84.05 -0.62 0.13 16
21 N -0.59 -5.03 6.21 -7.96 -0.05 -5.08 16
22 H 0.43 2.14 8.96 -40.82 -0.37 1.78 16
23 N -0.75 -17.00 4.30 -53.42 -0.23 -17.22 16
24 C -0.24 -6.62 10.41 -15.06 -0.16 -6.77 16
25 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16
26 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16
27 N -0.93 -29.76 13.97 55.49 0.78 -28.99 16
28 Si 0.88 22.60 27.73 -169.99 -4.71 17.89 16
29 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
30 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16
31 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16
32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16
35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16
36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16
37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.40 3.94 8.60 -40.82 -0.35 3.59 16
41 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16
42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
43 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16
44 H 0.11 1.41 8.10 -51.93 -0.42 0.99 16
45 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16
46 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16
47 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16
48 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16
49 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16
LS Contribution 408.17 15.07 6.15 6.15
Total: -1.00 -37.05 408.17 -9.67 -46.72
By element:
Atomic # 1 Polarization: 19.40 SS G_CDS: -7.64 Total: 11.77 kcal
Atomic # 6 Polarization: 3.25 SS G_CDS: -3.58 Total: -0.33 kcal
Atomic # 7 Polarization: -72.47 SS G_CDS: 0.03 Total: -72.44 kcal
Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal
Atomic # 14 Polarization: 22.60 SS G_CDS: -4.71 Total: 17.89 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -37.05 -9.67 -46.72 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001135885528.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.744 kcal
(2) G-P(sol) polarization free energy of solvation -37.054 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.720 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.025 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds