Wall clock time and date at job start Wed Apr 1 2020 04:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46495 * 109.46956 * 2 1 4 4 C 1.36936 * 120.00320 * 275.73026 * 3 2 1 5 5 H 1.07999 * 119.99658 * 33.27938 * 4 3 2 6 6 C 1.38812 * 119.99999 * 213.27084 * 4 3 2 7 7 N 1.31619 * 120.00050 * 17.28024 * 6 4 3 8 8 Si 1.86796 * 119.99836 * 197.27443 * 6 4 3 9 9 H 1.48502 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47467 * 120.00479 * 8 6 4 11 11 H 1.48505 * 109.47373 * 240.00629 * 8 6 4 12 12 C 1.46509 * 119.99823 * 95.73622 * 3 2 1 13 13 H 1.08994 * 109.47191 * 180.02562 * 12 3 2 14 14 C 1.52997 * 109.47013 * 60.07769 * 12 3 2 15 15 C 1.52996 * 109.46790 * 300.07831 * 12 3 2 16 16 N 1.46502 * 109.47175 * 304.99730 * 15 12 3 17 17 C 1.34779 * 119.99539 * 180.02562 * 16 15 12 18 18 O 1.21278 * 120.00260 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99536 * 180.02562 * 17 16 15 20 20 N 1.46504 * 109.46649 * 179.97438 * 19 17 16 21 21 N 1.39826 * 125.38708 * 269.95145 * 20 19 17 22 22 C 1.30235 * 110.09574 * 180.02562 * 21 20 19 23 23 C 1.50692 * 126.17600 * 180.02562 * 22 21 20 24 24 C 1.45858 * 107.65528 * 0.02562 * 22 21 20 25 25 C 1.39993 * 134.26734 * 180.30664 * 24 22 21 26 26 C 1.37018 * 118.16098 * 180.15171 * 25 24 22 27 27 C 1.38807 * 119.64188 * 359.50804 * 26 25 24 28 28 N 1.31500 * 121.58991 * 0.25633 * 27 26 25 29 29 C 1.32761 * 121.47477 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46650 * 59.99835 * 1 2 3 31 31 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46777 * 299.99600 * 1 2 3 33 33 H 1.09002 * 109.46777 * 240.00400 * 2 1 3 34 34 H 1.09000 * 109.46992 * 120.00820 * 2 1 3 35 35 H 0.96999 * 119.99726 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.47340 * 299.99888 * 14 12 3 37 37 H 1.09006 * 109.47414 * 59.99921 * 14 12 3 38 38 H 1.08996 * 109.47185 * 180.02562 * 14 12 3 39 39 H 1.09003 * 109.46803 * 184.99619 * 15 12 3 40 40 H 1.08999 * 109.47291 * 64.99892 * 15 12 3 41 41 H 0.96995 * 120.00085 * 0.02562 * 16 15 12 42 42 H 1.09001 * 109.47137 * 59.99715 * 19 17 16 43 43 H 1.08999 * 109.46849 * 299.99622 * 19 17 16 44 44 H 1.09001 * 109.47251 * 269.97325 * 23 22 21 45 45 H 1.09001 * 109.47251 * 29.98031 * 23 22 21 46 46 H 1.09010 * 109.47500 * 149.97653 * 23 22 21 47 47 H 1.08006 * 120.92050 * 359.93233 * 25 24 22 48 48 H 1.07994 * 120.17582 * 179.78549 * 26 25 24 49 49 H 1.08005 * 119.20350 * 180.23143 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0662 -1.1799 5 1 1.4370 1.8811 -1.9830 6 6 3.1502 2.9987 -1.3438 7 7 4.1873 2.9916 -0.5333 8 14 3.0445 4.2633 -2.7145 9 1 1.7882 4.0601 -3.4797 10 1 3.0524 5.6285 -2.1302 11 1 4.2087 4.1070 -3.6231 12 6 2.3821 2.0295 1.2625 13 1 2.7201 3.0466 1.0644 14 6 3.5077 1.2411 1.9349 15 6 1.1631 2.0668 2.1863 16 7 0.0468 2.7175 1.4958 17 6 -1.1384 2.8641 2.1205 18 8 -1.2810 2.4569 3.2539 19 6 -2.2869 3.5330 1.4100 20 7 -3.4541 3.5687 2.2947 21 7 -4.4377 2.5784 2.3780 22 6 -5.3368 2.9136 3.2585 23 6 -6.5545 2.1104 3.6365 24 6 -4.9526 4.2069 3.8128 25 6 -5.5027 5.0587 4.7779 26 6 -4.8514 6.2329 5.0508 27 6 -3.6749 6.5373 4.3800 28 7 -3.1660 5.7260 3.4789 29 6 -3.7547 4.5769 3.1695 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 4.8968 3.6430 -0.6481 36 1 3.1706 0.2235 2.1329 37 1 4.3762 1.2145 1.2767 38 1 3.7780 1.7231 2.8744 39 1 1.4082 2.6268 3.0888 40 1 0.8801 1.0492 2.4557 41 1 0.1607 3.0428 0.5891 42 1 -2.5322 2.9724 0.5079 43 1 -2.0040 4.5504 1.1399 44 1 -7.3893 2.3921 2.9946 45 1 -6.3424 1.0485 3.5118 46 1 -6.8128 2.3096 4.6766 47 1 -6.4172 4.7992 5.2908 48 1 -5.2489 6.9158 5.7870 49 1 -3.1654 7.4631 4.6033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154415745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:24 Heat of formation + Delta-G solvation = 88.336851 kcal Electronic energy + Delta-G solvation = -30874.556021 eV Core-core repulsion = 26839.144044 eV Total energy + Delta-G solvation = -4035.411977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66852 -39.31238 -38.15001 -36.92026 -34.37424 -33.68331 -32.02128 -31.88628 -31.17603 -30.29308 -29.79871 -28.19377 -26.71659 -24.85574 -23.96897 -23.92077 -22.70244 -21.71377 -20.32986 -19.78243 -19.26732 -17.66801 -17.32194 -17.10310 -16.74731 -16.31248 -15.43236 -15.33480 -15.08394 -14.69495 -14.33362 -14.23028 -13.70736 -13.55035 -13.53546 -13.36952 -13.14480 -12.86047 -12.74694 -12.70010 -12.45831 -12.29532 -12.16372 -11.85960 -11.82720 -11.48661 -11.08890 -10.96457 -10.93758 -10.83721 -10.70475 -10.65481 -10.29776 -10.09891 -9.65797 -9.61584 -9.54624 -9.45214 -9.03050 -8.55062 -8.44151 -8.27905 -6.69425 -5.90710 -3.39573 0.68319 1.18844 1.98283 2.33441 2.94753 3.28885 3.38974 3.39389 3.58818 3.76196 4.03294 4.15814 4.38710 4.39714 4.62808 4.84276 5.03257 5.08561 5.13755 5.16789 5.21212 5.24530 5.31885 5.37774 5.45240 5.55687 5.66073 5.88426 5.97920 6.04365 6.14039 6.16732 6.24514 6.36855 6.42852 6.47031 6.53612 6.60609 6.66890 6.71230 6.82190 6.89939 7.01896 7.14884 7.41510 7.46162 7.55526 7.75157 7.84073 8.06083 8.40652 8.64164 9.13571 9.75029 10.32420 11.15854 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002906 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.423027 B = 9632.731196 C =10235.406803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.264 4.264 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.290 1.290 12 C 0.177 3.823 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.696 5.696 17 C 0.492 3.508 18 O -0.544 6.544 19 C 0.122 3.878 20 N -0.369 5.369 21 N -0.225 5.225 22 C 0.101 3.899 23 C -0.072 4.072 24 C -0.224 4.224 25 C 0.005 3.995 26 C -0.222 4.222 27 C 0.168 3.832 28 N -0.499 5.499 29 C 0.327 3.673 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.254 0.746 36 H 0.029 0.971 37 H 0.079 0.921 38 H 0.032 0.968 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.412 0.588 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.137 0.863 48 H 0.139 0.861 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.654 4.136 9.107 21.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.393 4.393 5 H 0.082 0.918 6 C -0.189 4.189 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.217 1.217 12 C 0.070 3.930 13 H 0.118 0.882 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.347 5.347 17 C 0.275 3.725 18 O -0.422 6.422 19 C -0.003 4.003 20 N -0.158 5.158 21 N -0.039 5.039 22 C -0.078 4.078 23 C -0.130 4.130 24 C -0.234 4.234 25 C -0.024 4.024 26 C -0.244 4.244 27 C -0.001 4.001 28 N -0.214 5.214 29 C 0.089 3.911 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.098 0.902 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.249 0.751 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.101 0.899 45 H 0.099 0.901 46 H 0.099 0.901 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.260 3.178 8.434 19.471 hybrid contribution -0.575 1.209 -0.207 1.355 sum -17.835 4.387 8.227 20.125 Atomic orbital electron populations 1.22448 1.00023 0.99070 1.01427 1.20756 0.91664 0.87441 0.98719 1.43901 1.75985 1.08287 1.02268 1.19126 1.08644 1.18178 0.93375 0.91772 1.25165 0.94526 1.01365 0.97810 1.70015 1.07847 1.35876 1.39498 0.86343 0.77641 0.81600 0.81862 1.20176 1.21504 1.21700 1.20491 0.88805 0.99570 0.84165 0.88184 1.22023 1.01131 0.97953 0.99251 1.22179 0.87935 0.96178 0.95787 1.45881 1.10629 1.59098 1.19101 1.20641 0.84232 0.80423 0.87160 1.90692 1.82991 1.50153 1.18399 1.21504 0.82041 1.04515 0.92274 1.47517 1.20487 1.13412 1.34350 1.76691 0.98029 1.09772 1.19387 1.23454 0.96718 0.93042 0.94536 1.20234 0.91518 0.99145 1.02135 1.20362 0.99788 0.98543 1.04719 1.20714 0.97905 0.91577 0.92185 1.21605 0.98804 0.99186 1.04834 1.22728 0.92018 0.96574 0.88828 1.66743 1.33651 1.02770 1.18190 1.18936 0.91288 0.89713 0.91194 0.93440 0.94840 0.93070 0.94088 0.94564 0.93575 0.95168 0.90230 0.94856 0.93003 0.92848 0.75137 0.85915 0.85880 0.89897 0.90055 0.90057 0.84522 0.84280 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 9.87 37.16 0.37 -2.73 16 2 C 0.14 2.85 5.67 -4.04 -0.02 2.83 16 3 N -0.58 -13.01 1.85 -165.66 -0.31 -13.32 16 4 C -0.26 -6.46 9.26 -15.06 -0.14 -6.60 16 5 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 6 C 0.01 0.29 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -23.49 10.60 55.49 0.59 -22.90 16 8 Si 0.90 20.11 29.59 -169.99 -5.03 15.08 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 C 0.18 3.80 1.92 -67.93 -0.13 3.67 16 13 H 0.10 2.43 6.03 -51.93 -0.31 2.12 16 14 C -0.14 -2.98 9.05 37.16 0.34 -2.65 16 15 C 0.10 2.06 4.34 -4.04 -0.02 2.04 16 16 N -0.70 -12.74 3.99 -60.29 -0.24 -12.98 16 17 C 0.49 9.08 7.66 -10.98 -0.08 8.99 16 18 O -0.54 -12.09 16.43 5.56 0.09 -11.99 16 19 C 0.12 1.86 6.89 -5.19 -0.04 1.82 16 20 N -0.37 -6.09 3.13 -61.60 -0.19 -6.28 16 21 N -0.23 -3.58 12.40 34.82 0.43 -3.14 16 22 C 0.10 1.31 7.44 -80.23 -0.60 0.72 16 23 C -0.07 -0.57 10.48 36.00 0.38 -0.19 16 24 C -0.22 -3.00 6.35 -105.18 -0.67 -3.67 16 25 C 0.00 0.04 10.18 -39.37 -0.40 -0.36 16 26 C -0.22 -1.97 10.04 -39.81 -0.40 -2.37 16 27 C 0.17 1.83 11.15 -17.48 -0.19 1.64 16 28 N -0.50 -7.52 10.40 -12.34 -0.13 -7.65 16 29 C 0.33 5.23 7.97 -156.12 -1.24 3.99 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.97 4.99 -51.93 -0.26 0.71 16 33 H 0.04 0.86 8.09 -51.93 -0.42 0.44 16 34 H 0.04 0.72 6.45 -51.93 -0.33 0.38 16 35 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 36 H 0.03 0.58 6.67 -51.92 -0.35 0.23 16 37 H 0.08 1.86 7.40 -51.93 -0.38 1.47 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.09 7.05 -51.93 -0.37 0.72 16 41 H 0.41 7.48 7.90 -40.82 -0.32 7.16 16 42 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 44 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 48 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 49 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 401.03 15.07 6.04 6.04 Total: -1.00 -32.56 401.03 -9.05 -41.61 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.37 Total: 8.19 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -2.94 Total: 7.34 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: 0.15 Total: -66.27 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.08 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.56 -9.05 -41.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154415745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.949 kcal (2) G-P(sol) polarization free energy of solvation -32.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds