Wall clock time and date at job start Wed Apr 1 2020 04:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46495 * 109.46956 * 2 1 4 4 C 1.36936 * 120.00320 * 275.73026 * 3 2 1 5 5 H 1.07999 * 119.99658 * 33.27938 * 4 3 2 6 6 C 1.38812 * 119.99999 * 213.27084 * 4 3 2 7 7 N 1.31619 * 120.00050 * 17.28024 * 6 4 3 8 8 Si 1.86796 * 119.99836 * 197.27443 * 6 4 3 9 9 H 1.48502 * 109.47234 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47467 * 120.00479 * 8 6 4 11 11 H 1.48505 * 109.47373 * 240.00629 * 8 6 4 12 12 C 1.46509 * 119.99823 * 95.73622 * 3 2 1 13 13 H 1.08994 * 109.47191 * 180.02562 * 12 3 2 14 14 C 1.52997 * 109.47013 * 60.07769 * 12 3 2 15 15 C 1.52996 * 109.46790 * 300.07831 * 12 3 2 16 16 N 1.46502 * 109.47175 * 304.99730 * 15 12 3 17 17 C 1.34779 * 119.99539 * 180.02562 * 16 15 12 18 18 O 1.21278 * 120.00260 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.99536 * 180.02562 * 17 16 15 20 20 N 1.46504 * 109.46649 * 179.97438 * 19 17 16 21 21 N 1.39826 * 125.38708 * 269.95145 * 20 19 17 22 22 C 1.30235 * 110.09574 * 180.02562 * 21 20 19 23 23 C 1.50692 * 126.17600 * 180.02562 * 22 21 20 24 24 C 1.45858 * 107.65528 * 0.02562 * 22 21 20 25 25 C 1.39993 * 134.26734 * 180.30664 * 24 22 21 26 26 C 1.37018 * 118.16098 * 180.15171 * 25 24 22 27 27 C 1.38807 * 119.64188 * 359.50804 * 26 25 24 28 28 N 1.31500 * 121.58991 * 0.25633 * 27 26 25 29 29 C 1.32761 * 121.47477 * 359.97438 * 28 27 26 30 30 H 1.08996 * 109.46650 * 59.99835 * 1 2 3 31 31 H 1.08998 * 109.47007 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46777 * 299.99600 * 1 2 3 33 33 H 1.09002 * 109.46777 * 240.00400 * 2 1 3 34 34 H 1.09000 * 109.46992 * 120.00820 * 2 1 3 35 35 H 0.96999 * 119.99726 * 179.97438 * 7 6 4 36 36 H 1.09007 * 109.47340 * 299.99888 * 14 12 3 37 37 H 1.09006 * 109.47414 * 59.99921 * 14 12 3 38 38 H 1.08996 * 109.47185 * 180.02562 * 14 12 3 39 39 H 1.09003 * 109.46803 * 184.99619 * 15 12 3 40 40 H 1.08999 * 109.47291 * 64.99892 * 15 12 3 41 41 H 0.96995 * 120.00085 * 0.02562 * 16 15 12 42 42 H 1.09001 * 109.47137 * 59.99715 * 19 17 16 43 43 H 1.08999 * 109.46849 * 299.99622 * 19 17 16 44 44 H 1.09001 * 109.47251 * 269.97325 * 23 22 21 45 45 H 1.09001 * 109.47251 * 29.98031 * 23 22 21 46 46 H 1.09010 * 109.47500 * 149.97653 * 23 22 21 47 47 H 1.08006 * 120.92050 * 359.93233 * 25 24 22 48 48 H 1.07994 * 120.17582 * 179.78549 * 26 25 24 49 49 H 1.08005 * 119.20350 * 180.23143 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1350 2.0662 -1.1799 5 1 1.4370 1.8811 -1.9830 6 6 3.1502 2.9987 -1.3438 7 7 4.1873 2.9916 -0.5333 8 14 3.0445 4.2633 -2.7145 9 1 1.7882 4.0601 -3.4797 10 1 3.0524 5.6285 -2.1302 11 1 4.2087 4.1070 -3.6231 12 6 2.3821 2.0295 1.2625 13 1 2.7201 3.0466 1.0644 14 6 3.5077 1.2411 1.9349 15 6 1.1631 2.0668 2.1863 16 7 0.0468 2.7175 1.4958 17 6 -1.1384 2.8641 2.1205 18 8 -1.2810 2.4569 3.2539 19 6 -2.2869 3.5330 1.4100 20 7 -3.4541 3.5687 2.2947 21 7 -4.4377 2.5784 2.3780 22 6 -5.3368 2.9136 3.2585 23 6 -6.5545 2.1104 3.6365 24 6 -4.9526 4.2069 3.8128 25 6 -5.5027 5.0587 4.7779 26 6 -4.8514 6.2329 5.0508 27 6 -3.6749 6.5373 4.3800 28 7 -3.1660 5.7260 3.4789 29 6 -3.7547 4.5769 3.1695 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5140 0.8899 35 1 4.8968 3.6430 -0.6481 36 1 3.1706 0.2235 2.1329 37 1 4.3762 1.2145 1.2767 38 1 3.7780 1.7231 2.8744 39 1 1.4082 2.6268 3.0888 40 1 0.8801 1.0492 2.4557 41 1 0.1607 3.0428 0.5891 42 1 -2.5322 2.9724 0.5079 43 1 -2.0040 4.5504 1.1399 44 1 -7.3893 2.3921 2.9946 45 1 -6.3424 1.0485 3.5118 46 1 -6.8128 2.3096 4.6766 47 1 -6.4172 4.7992 5.2908 48 1 -5.2489 6.9158 5.7870 49 1 -3.1654 7.4631 4.6033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154415745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:23 Heat of formation + Delta-G solvation = 68.963039 kcal Electronic energy + Delta-G solvation = -30875.396132 eV Core-core repulsion = 26839.144044 eV Total energy + Delta-G solvation = -4036.252089 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.60703 -40.79076 -39.10440 -38.59419 -35.39129 -35.28777 -33.74505 -33.03142 -32.63421 -31.23542 -30.71967 -29.94120 -27.91010 -26.20580 -25.79013 -24.80384 -23.67981 -23.33968 -21.63953 -21.07348 -20.76586 -18.95995 -18.52958 -18.31509 -18.18659 -17.18748 -16.93268 -16.62119 -16.55132 -16.19802 -15.92426 -15.37594 -15.17389 -14.69110 -14.51359 -14.35223 -14.27028 -14.14567 -14.02781 -13.95247 -13.56410 -13.49635 -13.44196 -13.25753 -13.06577 -13.00926 -12.83514 -12.72527 -12.57572 -12.43295 -12.03289 -11.89555 -11.86080 -11.55961 -11.39496 -11.20098 -11.03274 -10.45598 -10.43463 -10.03093 -10.00152 -9.24049 -8.55024 -7.83127 -5.33546 -0.16531 0.34475 0.99305 1.41084 1.48394 1.49752 1.54280 1.61084 2.26579 2.54026 2.83262 3.16460 3.25720 3.31590 3.54969 3.60308 3.73601 3.85513 4.03166 4.05730 4.14376 4.20184 4.33379 4.42587 4.50870 4.56577 4.62920 4.76089 4.76741 4.81834 4.83706 4.90149 4.90649 4.93310 4.98109 5.02945 5.18887 5.23892 5.29431 5.40002 5.42437 5.55236 5.60721 5.66979 5.74482 5.81641 5.84648 6.45798 6.48470 6.56472 6.95051 7.15424 7.23444 7.90539 8.43765 9.21169 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.002906 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.423027 B = 9632.731196 C =10235.406803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.261 4.261 5 H 0.064 0.936 6 C -0.032 4.032 7 N -0.915 5.915 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.293 1.293 11 H -0.300 1.300 12 C 0.185 3.815 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.119 3.881 16 N -0.691 5.691 17 C 0.496 3.504 18 O -0.584 6.584 19 C 0.128 3.872 20 N -0.390 5.390 21 N -0.271 5.271 22 C 0.107 3.893 23 C -0.070 4.070 24 C -0.245 4.245 25 C 0.009 3.991 26 C -0.210 4.210 27 C 0.157 3.843 28 N -0.542 5.542 29 C 0.291 3.709 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.248 0.752 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.413 0.587 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.180 0.820 48 H 0.183 0.817 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.571 4.888 10.313 24.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.014 3.986 3 N -0.313 5.313 4 C -0.391 4.391 5 H 0.081 0.919 6 C -0.229 4.229 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.220 1.220 11 H -0.228 1.228 12 C 0.078 3.922 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.007 4.007 16 N -0.342 5.342 17 C 0.281 3.719 18 O -0.464 6.464 19 C 0.003 3.997 20 N -0.179 5.179 21 N -0.085 5.085 22 C -0.071 4.071 23 C -0.128 4.128 24 C -0.255 4.255 25 C -0.019 4.019 26 C -0.232 4.232 27 C -0.010 4.010 28 N -0.258 5.258 29 C 0.054 3.946 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.250 0.750 42 H 0.157 0.843 43 H 0.153 0.847 44 H 0.123 0.877 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.197 0.803 48 H 0.201 0.799 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -20.210 3.932 9.636 22.732 hybrid contribution 0.266 1.020 -0.464 1.151 sum -19.943 4.952 9.172 22.503 Atomic orbital electron populations 1.22256 0.98149 1.00227 1.00809 1.20825 0.92946 0.86262 0.98569 1.44013 1.76118 1.09133 1.02006 1.19293 1.08016 1.17959 0.93869 0.91876 1.25729 0.94477 1.02990 0.99725 1.70144 1.08383 1.36372 1.40997 0.85448 0.77366 0.79395 0.79580 1.19085 1.21965 1.22781 1.20314 0.89593 0.98061 0.84267 0.91001 1.21891 0.99699 0.98722 0.99173 1.21882 0.87649 0.95964 0.95177 1.45822 1.10521 1.58866 1.18990 1.21194 0.84598 0.79499 0.86624 1.90657 1.83652 1.51897 1.20217 1.21460 0.81052 1.04873 0.92363 1.47577 1.20807 1.14180 1.35307 1.76624 0.99272 1.10846 1.21745 1.24301 0.96928 0.93095 0.92788 1.20472 0.89981 0.98261 1.04134 1.20769 0.99530 0.99350 1.05805 1.21281 0.98969 0.90855 0.90774 1.22097 0.97394 0.99313 1.04356 1.23442 0.92968 0.96827 0.87774 1.66737 1.35269 1.03461 1.20290 1.19375 0.92820 0.90302 0.92145 0.93690 0.92796 0.93935 0.94844 0.94060 0.94235 0.94016 0.93043 0.93341 0.93366 0.93321 0.74968 0.84307 0.84727 0.87684 0.90238 0.87384 0.80314 0.79939 0.79128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.50 9.87 71.99 0.71 -4.79 16 2 C 0.14 5.60 5.67 86.38 0.49 6.09 16 3 N -0.59 -26.53 1.85 -678.03 -1.25 -27.79 16 4 C -0.26 -12.85 9.26 84.03 0.78 -12.07 16 5 H 0.06 3.09 7.89 -2.91 -0.02 3.07 16 6 C -0.03 -1.61 4.85 84.86 0.41 -1.20 16 7 N -0.91 -49.32 10.60 21.65 0.23 -49.09 16 8 Si 0.95 41.82 29.59 68.60 2.03 43.85 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.30 -13.61 7.11 99.48 0.71 -12.91 16 12 C 0.19 8.06 1.92 44.99 0.09 8.15 16 13 H 0.07 3.59 6.03 -2.39 -0.01 3.58 16 14 C -0.14 -5.66 9.05 71.98 0.65 -5.01 16 15 C 0.12 4.75 4.34 86.38 0.37 5.13 16 16 N -0.69 -25.74 3.99 -463.05 -1.85 -27.58 16 17 C 0.50 18.71 7.66 87.66 0.67 19.38 16 18 O -0.58 -26.62 16.43 -3.02 -0.05 -26.67 16 19 C 0.13 4.00 6.89 85.63 0.59 4.59 16 20 N -0.39 -13.13 3.13 -348.79 -1.09 -14.22 16 21 N -0.27 -8.72 12.40 -43.75 -0.54 -9.26 16 22 C 0.11 2.69 7.44 44.77 0.33 3.02 16 23 C -0.07 -0.94 10.48 71.23 0.75 -0.19 16 24 C -0.24 -6.24 6.35 -20.23 -0.13 -6.37 16 25 C 0.01 0.15 10.18 22.41 0.23 0.37 16 26 C -0.21 -2.95 10.04 22.12 0.22 -2.73 16 27 C 0.16 3.15 11.15 84.88 0.95 4.10 16 28 N -0.54 -16.29 10.40 -192.96 -2.01 -18.30 16 29 C 0.29 9.36 7.97 134.12 1.07 10.43 16 30 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.04 1.58 4.99 -2.39 -0.01 1.57 16 33 H 0.03 1.38 8.09 -2.39 -0.02 1.36 16 34 H 0.04 1.60 6.45 -2.39 -0.02 1.59 16 35 H 0.25 13.22 8.31 -92.71 -0.77 12.45 16 36 H 0.04 1.60 6.67 -2.38 -0.02 1.59 16 37 H 0.05 2.44 7.40 -2.38 -0.02 2.42 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.99 7.05 -2.39 -0.02 1.98 16 41 H 0.41 15.24 7.90 -92.71 -0.73 14.51 16 42 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 43 H 0.14 3.75 8.14 -2.39 -0.02 3.74 16 44 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 48 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 49 H 0.19 2.42 8.06 -2.91 -0.02 2.39 16 Total: -1.00 -73.70 401.03 3.89 -69.81 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.24 Total: 30.34 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 8.18 Total: 28.91 kcal Atomic # 7 Polarization: -139.73 SS G_CDS: -6.51 Total: -146.24 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.85 kcal Total: -73.70 3.89 -69.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154415745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.774 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds