Wall clock time and date at job start Wed Apr 1 2020 04:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46932 * 2 1 4 4 C 1.36935 * 120.00077 * 84.27424 * 3 2 1 5 5 H 1.08006 * 119.99928 * 28.84482 * 4 3 2 6 6 C 1.38815 * 120.00271 * 209.11154 * 4 3 2 7 7 N 1.31626 * 119.99324 * 18.62176 * 6 4 3 8 8 Si 1.86795 * 120.00255 * 198.62303 * 6 4 3 9 9 H 1.48497 * 109.47297 * 90.00494 * 8 6 4 10 10 H 1.48510 * 109.46754 * 210.00229 * 8 6 4 11 11 H 1.48502 * 109.47081 * 330.00047 * 8 6 4 12 12 C 1.46503 * 119.99953 * 264.27081 * 3 2 1 13 13 H 1.08997 * 109.47125 * 183.53665 * 12 3 2 14 14 C 1.52996 * 109.46915 * 63.53523 * 12 3 2 15 15 C 1.53004 * 109.47140 * 303.53344 * 12 3 2 16 16 N 1.46504 * 109.47121 * 305.00067 * 15 12 3 17 17 C 1.34772 * 119.99561 * 180.02562 * 16 15 12 18 18 O 1.21524 * 120.00321 * 359.97438 * 17 16 15 19 19 C 1.48114 * 119.99782 * 179.97438 * 17 16 15 20 20 C 1.39859 * 119.35856 * 179.97438 * 19 17 16 21 21 C 1.36852 * 119.59329 * 179.97438 * 20 19 17 22 22 C 1.40170 * 118.30926 * 359.97438 * 21 20 19 23 23 C 1.41406 * 133.78568 * 180.02562 * 22 21 20 24 24 C 1.50703 * 125.70292 * 359.95230 * 23 22 21 25 25 N 1.30160 * 108.59533 * 179.97438 * 23 22 21 26 26 N 1.39975 * 109.85777 * 0.02562 * 25 23 22 27 27 C 1.46501 * 125.89214 * 180.02562 * 26 25 23 28 28 C 1.37104 * 108.21604 * 359.97438 * 26 25 23 29 29 N 1.32265 * 133.49079 * 180.32240 * 28 26 25 30 30 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47146 * 300.00499 * 1 2 3 32 32 H 1.09004 * 109.47024 * 59.99904 * 1 2 3 33 33 H 1.08998 * 109.47186 * 240.00284 * 2 1 3 34 34 H 1.09002 * 109.47326 * 119.99650 * 2 1 3 35 35 H 0.97002 * 119.99592 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47148 * 180.02562 * 14 12 3 37 37 H 1.08999 * 109.47081 * 299.99533 * 14 12 3 38 38 H 1.08996 * 109.47304 * 60.00079 * 14 12 3 39 39 H 1.09003 * 109.47092 * 65.00209 * 15 12 3 40 40 H 1.09001 * 109.46940 * 185.00032 * 15 12 3 41 41 H 0.96995 * 119.99776 * 359.97438 * 16 15 12 42 42 H 1.07993 * 120.20358 * 359.95988 * 20 19 17 43 43 H 1.08008 * 120.84550 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47359 * 89.99431 * 24 23 22 45 45 H 1.08998 * 109.46668 * 209.99440 * 24 23 22 46 46 H 1.09001 * 109.46630 * 329.98912 * 24 23 22 47 47 H 1.09001 * 109.46974 * 269.97245 * 27 26 25 48 48 H 1.09001 * 109.47601 * 29.97094 * 27 26 25 49 49 H 1.09004 * 109.47267 * 149.97392 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0662 1.1800 5 1 2.3293 1.5313 2.0979 6 6 1.9980 3.4475 1.1972 7 7 1.4074 4.0627 0.1946 8 14 2.6517 4.4329 2.6431 9 1 4.0596 4.8247 2.3791 10 1 1.8243 5.6527 2.8253 11 1 2.5908 3.6050 3.8744 12 6 2.3819 2.0296 -1.2624 13 1 2.7793 3.0240 -1.0589 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1927 -1.9783 16 7 4.5830 0.9789 -1.0822 17 6 5.6456 0.2640 -1.5019 18 8 5.6587 -0.2037 -2.6235 19 6 6.7975 0.0483 -0.5961 20 6 7.8930 -0.6962 -1.0453 21 6 8.9601 -0.8980 -0.2126 22 6 8.9135 -0.3435 1.0739 23 6 9.8036 -0.3446 2.1727 24 6 11.1515 -1.0176 2.2120 25 7 9.2640 0.3324 3.1446 26 7 8.0087 0.8107 2.7513 27 6 7.1000 1.6145 3.5725 28 6 7.7768 0.3981 1.4646 29 7 6.7726 0.5689 0.6209 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3114 5.0279 0.2068 36 1 1.4123 2.6300 -3.0900 37 1 0.7444 1.1536 -2.3541 38 1 0.3851 2.7443 -1.6406 39 1 3.0182 0.2298 -2.2609 40 1 3.7788 1.7183 -2.8726 41 1 4.5727 1.3525 -0.1871 42 1 7.8967 -1.1094 -2.0430 43 1 9.8167 -1.4693 -0.5387 44 1 11.9155 -0.3212 1.8665 45 1 11.3747 -1.3243 3.2338 46 1 11.1389 -1.8941 1.5641 47 1 6.4357 0.9550 4.1311 48 1 7.6795 2.2209 4.2686 49 1 6.5084 2.2656 2.9289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157132524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:32 Heat of formation + Delta-G solvation = 89.352969 kcal Electronic energy + Delta-G solvation = -31118.457668 eV Core-core repulsion = 27083.089753 eV Total energy + Delta-G solvation = -4035.367915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.89776 -39.58579 -37.80679 -36.82571 -34.69036 -33.81934 -32.02112 -31.82593 -30.94931 -30.24059 -29.71969 -28.31244 -26.12143 -25.74149 -24.32706 -23.80651 -22.60538 -21.60389 -20.37982 -19.95443 -19.31411 -17.75273 -17.49622 -17.11852 -16.78504 -16.09939 -15.41621 -14.99384 -14.83613 -14.65502 -14.20631 -14.04770 -13.80267 -13.72627 -13.54318 -13.32869 -13.21017 -12.94830 -12.84923 -12.67093 -12.38358 -12.36470 -11.95552 -11.79976 -11.56837 -11.42331 -11.29698 -11.10565 -11.03372 -10.83647 -10.63247 -10.50556 -10.29574 -10.07908 -9.90683 -9.58801 -9.50959 -9.37961 -9.03163 -8.53083 -8.42341 -8.37256 -6.73652 -5.86257 -3.29086 0.31787 1.16439 2.00290 2.18551 2.98581 3.30827 3.38325 3.40253 3.49125 3.91167 3.95282 4.10735 4.42187 4.43357 4.69361 4.89380 5.03771 5.10005 5.23334 5.25602 5.28041 5.29478 5.38532 5.42772 5.56910 5.59227 5.65307 5.88168 5.99714 6.04996 6.10464 6.14768 6.31894 6.37886 6.44578 6.50185 6.56287 6.66735 6.70972 6.73781 6.78868 6.97425 7.02841 7.27542 7.28552 7.52057 7.60723 7.68104 7.79172 8.13685 8.41383 8.62421 9.16864 9.79302 10.33674 11.21073 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010942 B = 0.003845 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.384166 B = 7280.160197 C = 8979.166009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.143 3.857 3 N -0.583 5.583 4 C -0.254 4.254 5 H 0.065 0.935 6 C 0.008 3.992 7 N -0.893 5.893 8 Si 0.894 3.106 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.103 0.897 14 C -0.143 4.143 15 C 0.097 3.903 16 N -0.676 5.676 17 C 0.558 3.442 18 O -0.547 6.547 19 C 0.164 3.836 20 C -0.163 4.163 21 C -0.003 4.003 22 C -0.210 4.210 23 C 0.098 3.902 24 C -0.074 4.074 25 N -0.238 5.238 26 N -0.386 5.386 27 C 0.109 3.891 28 C 0.312 3.688 29 N -0.466 5.466 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.035 0.965 35 H 0.253 0.747 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.422 0.578 42 H 0.154 0.846 43 H 0.145 0.855 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.145 -8.381 0.937 17.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.016 3.984 3 N -0.304 5.304 4 C -0.383 4.383 5 H 0.083 0.917 6 C -0.191 4.191 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.205 1.205 12 C 0.070 3.930 13 H 0.121 0.879 14 C -0.202 4.202 15 C -0.028 4.028 16 N -0.326 5.326 17 C 0.341 3.659 18 O -0.425 6.425 19 C 0.012 3.988 20 C -0.186 4.186 21 C -0.032 4.032 22 C -0.221 4.221 23 C -0.078 4.078 24 C -0.133 4.133 25 N -0.054 5.054 26 N -0.176 5.176 27 C -0.032 4.032 28 C 0.071 3.929 29 N -0.183 5.183 30 H 0.046 0.954 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.260 0.740 42 H 0.172 0.828 43 H 0.162 0.838 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.106 0.894 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.363 -7.459 1.815 16.286 hybrid contribution 0.505 0.219 0.282 0.619 sum 14.869 -7.240 2.097 16.670 Atomic orbital electron populations 1.22394 0.99763 0.98342 1.02103 1.20783 0.91911 0.87561 0.98107 1.43999 1.73732 1.09742 1.02972 1.19143 1.42683 0.89227 0.87262 0.91683 1.25009 0.98980 0.97804 0.97354 1.70012 1.42925 1.08496 1.32250 0.86416 0.78659 0.79860 0.82620 1.21470 1.21903 1.20484 1.20524 0.90882 0.96655 0.84980 0.87887 1.22120 1.00525 0.99580 0.98001 1.22257 0.87062 1.00799 0.92718 1.45904 1.16345 1.50847 1.19512 1.17823 0.82280 0.79911 0.85882 1.90749 1.80769 1.51492 1.19492 1.21300 0.94843 0.93379 0.89242 1.21540 0.93347 1.01434 1.02242 1.20746 0.97796 0.94511 0.90109 1.19568 0.97327 1.07717 0.97441 1.22278 0.97434 0.97946 0.90108 1.20271 0.89277 0.99800 1.03961 1.76720 0.92755 1.13414 1.22533 1.48273 1.14395 1.46093 1.08838 1.21939 0.91364 0.94509 0.95365 1.18950 0.91387 0.95011 0.87571 1.66549 1.26726 1.22361 1.02650 0.95376 0.92913 0.93115 0.94451 0.94645 0.93659 0.95128 0.95136 0.90039 0.92463 0.92329 0.73964 0.82844 0.83753 0.89886 0.90231 0.89958 0.90598 0.89391 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 10.02 37.16 0.37 -2.85 16 2 C 0.14 2.90 5.73 -4.04 -0.02 2.87 16 3 N -0.58 -13.10 1.84 -165.66 -0.30 -13.40 16 4 C -0.25 -6.30 9.50 -15.06 -0.14 -6.44 16 5 H 0.07 1.64 7.90 -52.48 -0.41 1.23 16 6 C 0.01 0.20 4.84 -17.43 -0.08 0.11 16 7 N -0.89 -23.53 10.24 55.49 0.57 -22.96 16 8 Si 0.89 20.30 29.59 -169.99 -5.03 15.27 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 12 C 0.18 3.79 1.93 -67.93 -0.13 3.66 16 13 H 0.10 2.52 5.93 -51.93 -0.31 2.22 16 14 C -0.14 -2.92 8.25 37.16 0.31 -2.62 16 15 C 0.10 1.87 4.86 -4.04 -0.02 1.85 16 16 N -0.68 -12.94 5.38 -61.16 -0.33 -13.26 16 17 C 0.56 10.24 7.81 -12.21 -0.10 10.15 16 18 O -0.55 -10.84 16.29 5.34 0.09 -10.75 16 19 C 0.16 2.68 6.74 -82.97 -0.56 2.12 16 20 C -0.16 -2.13 9.55 -39.48 -0.38 -2.51 16 21 C 0.00 -0.03 10.17 -39.36 -0.40 -0.43 16 22 C -0.21 -2.75 6.12 -106.83 -0.65 -3.41 16 23 C 0.10 1.14 7.23 -82.09 -0.59 0.55 16 24 C -0.07 -0.50 10.45 36.01 0.38 -0.13 16 25 N -0.24 -3.25 12.43 33.88 0.42 -2.83 16 26 N -0.39 -5.69 4.07 -67.16 -0.27 -5.96 16 27 C 0.11 1.36 11.48 59.85 0.69 2.05 16 28 C 0.31 4.91 8.00 -156.15 -1.25 3.66 16 29 N -0.47 -7.92 9.54 -8.89 -0.08 -8.01 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.00 6.03 -51.93 -0.31 0.69 16 33 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 34 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 35 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 36 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.58 6.50 -51.93 -0.34 0.24 16 38 H 0.08 1.90 7.21 -51.93 -0.37 1.53 16 39 H 0.06 1.11 6.76 -51.93 -0.35 0.76 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.42 8.56 7.39 -40.82 -0.30 8.26 16 42 H 0.15 1.80 7.61 -52.49 -0.40 1.41 16 43 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -29.56 400.93 -8.83 -38.38 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.33 Total: 8.85 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -2.59 Total: 8.64 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: 0.00 Total: -66.44 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -29.56 -8.83 -38.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157132524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.737 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds