Wall clock time and date at job start Wed Apr 1 2020 04:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46932 * 2 1 4 4 C 1.36935 * 120.00077 * 84.27424 * 3 2 1 5 5 H 1.08006 * 119.99928 * 28.84482 * 4 3 2 6 6 C 1.38815 * 120.00271 * 209.11154 * 4 3 2 7 7 N 1.31626 * 119.99324 * 18.62176 * 6 4 3 8 8 Si 1.86795 * 120.00255 * 198.62303 * 6 4 3 9 9 H 1.48497 * 109.47297 * 90.00494 * 8 6 4 10 10 H 1.48510 * 109.46754 * 210.00229 * 8 6 4 11 11 H 1.48502 * 109.47081 * 330.00047 * 8 6 4 12 12 C 1.46503 * 119.99953 * 264.27081 * 3 2 1 13 13 H 1.08997 * 109.47125 * 183.53665 * 12 3 2 14 14 C 1.52996 * 109.46915 * 63.53523 * 12 3 2 15 15 C 1.53004 * 109.47140 * 303.53344 * 12 3 2 16 16 N 1.46504 * 109.47121 * 305.00067 * 15 12 3 17 17 C 1.34772 * 119.99561 * 180.02562 * 16 15 12 18 18 O 1.21524 * 120.00321 * 359.97438 * 17 16 15 19 19 C 1.48114 * 119.99782 * 179.97438 * 17 16 15 20 20 C 1.39859 * 119.35856 * 179.97438 * 19 17 16 21 21 C 1.36852 * 119.59329 * 179.97438 * 20 19 17 22 22 C 1.40170 * 118.30926 * 359.97438 * 21 20 19 23 23 C 1.41406 * 133.78568 * 180.02562 * 22 21 20 24 24 C 1.50703 * 125.70292 * 359.95230 * 23 22 21 25 25 N 1.30160 * 108.59533 * 179.97438 * 23 22 21 26 26 N 1.39975 * 109.85777 * 0.02562 * 25 23 22 27 27 C 1.46501 * 125.89214 * 180.02562 * 26 25 23 28 28 C 1.37104 * 108.21604 * 359.97438 * 26 25 23 29 29 N 1.32265 * 133.49079 * 180.32240 * 28 26 25 30 30 H 1.08995 * 109.46828 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47146 * 300.00499 * 1 2 3 32 32 H 1.09004 * 109.47024 * 59.99904 * 1 2 3 33 33 H 1.08998 * 109.47186 * 240.00284 * 2 1 3 34 34 H 1.09002 * 109.47326 * 119.99650 * 2 1 3 35 35 H 0.97002 * 119.99592 * 179.97438 * 7 6 4 36 36 H 1.09004 * 109.47148 * 180.02562 * 14 12 3 37 37 H 1.08999 * 109.47081 * 299.99533 * 14 12 3 38 38 H 1.08996 * 109.47304 * 60.00079 * 14 12 3 39 39 H 1.09003 * 109.47092 * 65.00209 * 15 12 3 40 40 H 1.09001 * 109.46940 * 185.00032 * 15 12 3 41 41 H 0.96995 * 119.99776 * 359.97438 * 16 15 12 42 42 H 1.07993 * 120.20358 * 359.95988 * 20 19 17 43 43 H 1.08008 * 120.84550 * 180.02562 * 21 20 19 44 44 H 1.08998 * 109.47359 * 89.99431 * 24 23 22 45 45 H 1.08998 * 109.46668 * 209.99440 * 24 23 22 46 46 H 1.09001 * 109.46630 * 329.98912 * 24 23 22 47 47 H 1.09001 * 109.46974 * 269.97245 * 27 26 25 48 48 H 1.09001 * 109.47601 * 29.97094 * 27 26 25 49 49 H 1.09004 * 109.47267 * 149.97392 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1350 2.0662 1.1800 5 1 2.3293 1.5313 2.0979 6 6 1.9980 3.4475 1.1972 7 7 1.4074 4.0627 0.1946 8 14 2.6517 4.4329 2.6431 9 1 4.0596 4.8247 2.3791 10 1 1.8243 5.6527 2.8253 11 1 2.5908 3.6050 3.8744 12 6 2.3819 2.0296 -1.2624 13 1 2.7793 3.0240 -1.0589 14 6 1.1417 2.1480 -2.1505 15 6 3.4439 1.1927 -1.9783 16 7 4.5830 0.9789 -1.0822 17 6 5.6456 0.2640 -1.5019 18 8 5.6587 -0.2037 -2.6235 19 6 6.7975 0.0483 -0.5961 20 6 7.8930 -0.6962 -1.0453 21 6 8.9601 -0.8980 -0.2126 22 6 8.9135 -0.3435 1.0739 23 6 9.8036 -0.3446 2.1727 24 6 11.1515 -1.0176 2.2120 25 7 9.2640 0.3324 3.1446 26 7 8.0087 0.8107 2.7513 27 6 7.1000 1.6145 3.5725 28 6 7.7768 0.3981 1.4646 29 7 6.7726 0.5689 0.6209 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.3114 5.0279 0.2068 36 1 1.4123 2.6300 -3.0900 37 1 0.7444 1.1536 -2.3541 38 1 0.3851 2.7443 -1.6406 39 1 3.0182 0.2298 -2.2609 40 1 3.7788 1.7183 -2.8726 41 1 4.5727 1.3525 -0.1871 42 1 7.8967 -1.1094 -2.0430 43 1 9.8167 -1.4693 -0.5387 44 1 11.9155 -0.3212 1.8665 45 1 11.3747 -1.3243 3.2338 46 1 11.1389 -1.8941 1.5641 47 1 6.4357 0.9550 4.1311 48 1 7.6795 2.2209 4.2686 49 1 6.5084 2.2656 2.9289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157132524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:31 Heat of formation + Delta-G solvation = 72.297974 kcal Electronic energy + Delta-G solvation = -31119.197228 eV Core-core repulsion = 27083.089753 eV Total energy + Delta-G solvation = -4036.107475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.90898 -40.94517 -39.08533 -38.42621 -35.68611 -35.33173 -33.74872 -33.05809 -32.42310 -31.43325 -30.45353 -30.10615 -27.55083 -26.66888 -25.93524 -25.29579 -23.64965 -23.28082 -21.69593 -21.11999 -20.83931 -19.16671 -18.64485 -18.51691 -18.05275 -17.14685 -16.94448 -16.57668 -16.48081 -15.92740 -15.81416 -15.45069 -15.06695 -14.64943 -14.58187 -14.46940 -14.28745 -14.24546 -13.96181 -13.85616 -13.66463 -13.63321 -13.27354 -13.15271 -13.08869 -13.00843 -12.83652 -12.69321 -12.64854 -12.22272 -12.10950 -12.03853 -11.74616 -11.58580 -11.43138 -11.29452 -11.26946 -10.58486 -10.44563 -10.17510 -9.89721 -9.37961 -8.60222 -7.81798 -5.25028 -0.76220 0.17507 1.02211 1.17627 1.46190 1.49580 1.55386 1.76570 2.15349 2.54116 2.74193 2.88594 3.16674 3.33047 3.53117 3.58841 3.66287 3.90965 4.12993 4.22569 4.23032 4.27942 4.29068 4.44457 4.51686 4.57258 4.66437 4.71827 4.82553 4.85053 4.87263 4.89433 4.89747 4.93817 5.03392 5.04891 5.09512 5.17102 5.28327 5.32282 5.44161 5.52926 5.59393 5.64098 5.73681 5.76563 5.92669 6.27272 6.46776 6.51554 6.73474 7.13014 7.24374 7.93529 8.42666 9.22909 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010942 B = 0.003845 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.384166 B = 7280.160197 C = 8979.166009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.143 3.857 3 N -0.591 5.591 4 C -0.253 4.253 5 H 0.057 0.943 6 C -0.032 4.032 7 N -0.913 5.913 8 Si 0.945 3.055 9 H -0.288 1.288 10 H -0.302 1.302 11 H -0.273 1.273 12 C 0.183 3.817 13 H 0.071 0.929 14 C -0.132 4.132 15 C 0.108 3.892 16 N -0.683 5.683 17 C 0.560 3.440 18 O -0.564 6.564 19 C 0.141 3.859 20 C -0.164 4.164 21 C 0.024 3.976 22 C -0.214 4.214 23 C 0.110 3.890 24 C -0.074 4.074 25 N -0.261 5.261 26 N -0.402 5.402 27 C 0.107 3.893 28 C 0.283 3.717 29 N -0.497 5.497 30 H 0.058 0.942 31 H 0.028 0.972 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.032 0.968 35 H 0.247 0.753 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.415 0.585 42 H 0.168 0.832 43 H 0.199 0.801 44 H 0.101 0.899 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.078 0.922 48 H 0.107 0.893 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.823 -10.506 0.674 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 N -0.313 5.313 4 C -0.383 4.383 5 H 0.075 0.925 6 C -0.229 4.229 7 N -0.558 5.558 8 Si 0.775 3.225 9 H -0.215 1.215 10 H -0.229 1.229 11 H -0.198 1.198 12 C 0.075 3.925 13 H 0.089 0.911 14 C -0.191 4.191 15 C -0.017 4.017 16 N -0.332 5.332 17 C 0.344 3.656 18 O -0.444 6.444 19 C -0.009 4.009 20 C -0.187 4.187 21 C -0.005 4.005 22 C -0.224 4.224 23 C -0.066 4.066 24 C -0.132 4.132 25 N -0.077 5.077 26 N -0.192 5.192 27 C -0.033 4.033 28 C 0.041 3.959 29 N -0.215 5.215 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.252 0.748 42 H 0.186 0.814 43 H 0.216 0.784 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.128 0.872 47 H 0.097 0.903 48 H 0.125 0.875 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.040 -9.604 1.552 19.622 hybrid contribution -0.234 0.801 0.379 0.917 sum 16.805 -8.803 1.932 19.069 Atomic orbital electron populations 1.22254 0.98773 0.99875 1.00615 1.20841 0.92596 0.86324 0.98536 1.44083 1.74124 1.10366 1.02683 1.19230 1.41719 0.89489 0.87874 0.92493 1.25501 0.99652 0.98531 0.99237 1.70141 1.44114 1.08001 1.33527 0.85610 0.77744 0.78320 0.80840 1.21497 1.22870 1.19772 1.20370 0.91717 0.95397 0.84966 0.91104 1.21952 0.99183 0.99885 0.98080 1.22037 0.86700 1.00422 0.92537 1.45917 1.16788 1.51416 1.19083 1.18144 0.82469 0.78965 0.86000 1.90720 1.81257 1.52119 1.20259 1.21131 0.95248 0.95379 0.89191 1.21735 0.92892 1.00892 1.03220 1.21275 0.98211 0.92687 0.88284 1.19955 0.96643 1.07131 0.98706 1.23087 0.98547 0.96315 0.88612 1.20546 0.86594 1.00751 1.05356 1.76724 0.92589 1.14713 1.23659 1.48482 1.15105 1.46796 1.08867 1.21958 0.91629 0.94550 0.95190 1.19319 0.92276 0.96206 0.88072 1.66371 1.28176 1.23629 1.03336 0.92288 0.95230 0.93664 0.93193 0.94961 0.94395 0.93475 0.93774 0.93106 0.92117 0.91789 0.74786 0.81406 0.78389 0.88032 0.89481 0.87191 0.90323 0.87457 0.90191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.92 10.02 71.98 0.72 -5.20 16 2 C 0.14 5.75 5.73 86.38 0.49 6.25 16 3 N -0.59 -27.01 1.84 -678.02 -1.25 -28.26 16 4 C -0.25 -12.88 9.50 84.03 0.80 -12.08 16 5 H 0.06 2.95 7.90 -2.91 -0.02 2.93 16 6 C -0.03 -1.68 4.84 84.86 0.41 -1.27 16 7 N -0.91 -49.63 10.24 21.65 0.22 -49.41 16 8 Si 0.94 42.95 29.59 68.60 2.03 44.98 16 9 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 C 0.18 7.97 1.93 44.99 0.09 8.06 16 13 H 0.07 3.60 5.93 -2.39 -0.01 3.58 16 14 C -0.13 -5.41 8.25 71.98 0.59 -4.82 16 15 C 0.11 4.20 4.86 86.38 0.42 4.61 16 16 N -0.68 -26.66 5.38 -465.70 -2.50 -29.17 16 17 C 0.56 20.64 7.81 86.87 0.68 21.32 16 18 O -0.56 -22.09 16.29 -3.79 -0.06 -22.15 16 19 C 0.14 4.56 6.74 42.08 0.28 4.84 16 20 C -0.16 -3.94 9.55 22.34 0.21 -3.72 16 21 C 0.02 0.42 10.17 22.41 0.23 0.65 16 22 C -0.21 -5.09 6.12 -21.29 -0.13 -5.22 16 23 C 0.11 2.25 7.23 43.59 0.32 2.57 16 24 C -0.07 -0.67 10.45 71.24 0.74 0.08 16 25 N -0.26 -6.80 12.43 -46.73 -0.58 -7.38 16 26 N -0.40 -11.86 4.07 -366.38 -1.49 -13.35 16 27 C 0.11 2.77 11.48 127.77 1.47 4.23 16 28 C 0.28 8.84 8.00 134.26 1.07 9.92 16 29 N -0.50 -17.23 9.54 -182.02 -1.74 -18.96 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.75 6.03 -2.39 -0.01 1.74 16 33 H 0.05 1.88 6.35 -2.39 -0.02 1.87 16 34 H 0.03 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.65 6.50 -2.39 -0.02 1.64 16 38 H 0.05 2.41 7.21 -2.39 -0.02 2.39 16 39 H 0.06 2.31 6.76 -2.39 -0.02 2.29 16 40 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.41 17.51 7.39 -92.71 -0.68 16.82 16 42 H 0.17 3.49 7.61 -2.91 -0.02 3.47 16 43 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 44 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 45 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 48 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -66.59 400.93 3.32 -63.27 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.29 Total: 30.20 kcal Atomic # 6 Polarization: 21.83 SS G_CDS: 8.40 Total: 30.23 kcal Atomic # 7 Polarization: -139.19 SS G_CDS: -7.34 Total: -146.53 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.59 3.32 -63.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157132524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.571 kcal (2) G-P(sol) polarization free energy of solvation -66.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds