Wall clock time and date at job start Wed Apr 1 2020 04:04:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09006 * 109.33259 * 2 1
4 4 C 1.50670 * 109.33984 * 119.52132 * 2 1 3
5 5 O 1.21302 * 120.31673 * 335.28448 * 4 2 1
6 6 N 1.35272 * 119.36839 * 155.25821 * 4 2 1
7 7 C 1.40318 * 118.26555 * 358.68484 * 6 4 2
8 8 C 1.38205 * 121.31732 * 162.25801 * 7 6 4
9 9 N 1.32761 * 118.78525 * 180.29816 * 8 7 6
10 10 C 1.32399 * 120.94500 * 0.02562 * 9 8 7
11 11 N 1.38582 * 118.98277 * 179.97438 * 10 9 8
12 12 C 1.46503 * 120.00310 * 180.02562 * 11 10 9
13 13 C 1.50699 * 109.47206 * 89.99681 * 12 11 10
14 14 H 1.08006 * 120.00167 * 0.02562 * 13 12 11
15 15 C 1.37878 * 120.00041 * 180.02562 * 13 12 11
16 16 N 1.31515 * 119.99699 * 359.97438 * 15 13 12
17 17 Si 1.86802 * 119.99966 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47230 * 359.97438 * 17 15 13
19 19 H 1.48506 * 109.46782 * 120.00216 * 17 15 13
20 20 H 1.48497 * 109.47131 * 239.99619 * 17 15 13
21 21 C 1.46504 * 120.00185 * 359.97438 * 11 10 9
22 22 C 1.54263 * 110.03261 * 57.90807 * 21 11 10
23 23 C 1.54962 * 104.16471 * 217.14228 * 22 21 11
24 24 C 1.54889 * 102.77640 * 37.88584 * 23 22 21
25 25 C 1.53882 * 110.03126 * 300.69405 * 21 11 10
26 26 N 1.32543 * 122.03697 * 359.93957 * 10 9 8
27 27 C 1.32791 * 120.42314 * 359.97438 * 26 10 9
28 28 N 1.38282 * 120.88718 * 180.20658 * 27 26 10
29 29 C 1.46896 * 110.99981 * 90.63567 * 28 27 26
30 30 H 1.09009 * 109.46821 * 179.67799 * 1 2 3
31 31 H 1.08997 * 109.47455 * 299.67753 * 1 2 3
32 32 H 1.08997 * 109.47271 * 59.68035 * 1 2 3
33 33 H 0.97000 * 120.86933 * 178.65634 * 6 4 2
34 34 H 1.07996 * 120.60514 * 0.02562 * 8 7 6
35 35 H 1.09000 * 109.47066 * 209.99546 * 12 11 10
36 36 H 1.08996 * 109.46785 * 329.99592 * 12 11 10
37 37 H 0.96999 * 119.99327 * 180.02562 * 16 15 13
38 38 H 1.08998 * 110.02192 * 179.30482 * 21 11 10
39 39 H 1.09005 * 110.48680 * 335.79247 * 22 21 11
40 40 H 1.09002 * 110.48903 * 98.42433 * 22 21 11
41 41 H 1.08998 * 110.71519 * 279.57195 * 23 22 21
42 42 H 1.08997 * 110.92678 * 156.29734 * 23 22 21
43 43 H 1.08996 * 110.48449 * 203.40531 * 24 23 22
44 44 H 1.08999 * 110.59595 * 80.82310 * 24 23 22
45 45 H 1.08997 * 110.03143 * 238.56550 * 25 21 11
46 46 H 1.09004 * 110.02892 * 359.95346 * 25 21 11
47 47 H 1.09003 * 109.47427 * 63.95227 * 29 28 27
48 48 H 1.09002 * 109.47318 * 183.95121 * 29 28 27
49 49 H 1.08999 * 109.47309 * 303.95584 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8909 1.0286 0.0000
4 6 2.0290 -0.7005 1.2371
5 8 1.3343 -0.7595 2.2297
6 7 3.2590 -1.2636 1.2301
7 6 4.0146 -1.1948 0.0498
8 6 5.3799 -1.4094 0.0574
9 7 6.0465 -1.3260 -1.0877
10 6 5.4217 -1.0424 -2.2201
11 7 6.1576 -0.9650 -3.3919
12 6 5.4891 -0.6522 -4.6574
13 6 5.4769 0.8406 -4.8634
14 1 5.9229 1.4913 -4.1257
15 6 4.8964 1.3758 -5.9938
16 7 4.3538 0.5835 -6.8923
17 14 4.8806 3.2263 -6.2488
18 1 5.5497 3.8899 -5.1011
19 1 5.6023 3.5591 -7.5033
20 1 3.4768 3.7008 -6.3446
21 6 7.6042 -1.1949 -3.3649
22 6 7.9062 -2.5949 -2.7916
23 6 9.1940 -2.3918 -1.9540
24 6 8.9721 -0.9975 -1.3170
25 6 8.2819 -0.1796 -2.4281
26 7 4.1141 -0.8310 -2.2678
27 6 3.3812 -0.8992 -1.1626
28 7 2.0157 -0.6845 -1.2020
29 6 1.2909 -1.9434 -1.4200
30 1 -0.3633 -1.0277 -0.0058
31 1 -0.3634 0.5088 0.8928
32 1 -0.3633 0.5188 -0.8871
33 1 3.6096 -1.7031 2.0206
34 1 5.8957 -1.6363 0.9786
35 1 6.0251 -1.1279 -5.4787
36 1 4.4647 -1.0234 -4.6286
37 1 3.9457 0.9600 -7.6877
38 1 8.0149 -1.1068 -4.3707
39 1 7.0871 -2.9317 -2.1562
40 1 8.0827 -3.3072 -3.5976
41 1 10.0749 -2.3875 -2.5959
42 1 9.2826 -3.1585 -1.1842
43 1 9.9263 -0.5452 -1.0471
44 1 8.3262 -1.0739 -0.4423
45 1 9.0220 0.4007 -2.9791
46 1 7.5345 0.4847 -1.9942
47 1 1.4565 -2.6094 -0.5731
48 1 0.2250 -1.7370 -1.5168
49 1 1.6534 -2.4182 -2.3317
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166533826.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:04:22
Heat of formation + Delta-G solvation = 56.379070 kcal
Electronic energy + Delta-G solvation = -32090.142312 eV
Core-core repulsion = 28053.344542 eV
Total energy + Delta-G solvation = -4036.797770 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.74604 -39.93602 -38.20520 -37.13733 -35.58431 -34.44182 -33.02348 -32.43606
-30.64554 -29.05929 -28.29335 -28.03933 -27.24042 -25.99265 -23.87980 -23.52665
-23.09799 -21.70335 -20.38830 -20.10889 -19.07351 -18.00796 -17.92815 -16.87729
-16.72525 -16.35904 -15.90766 -15.29456 -15.25503 -15.15354 -14.63481 -14.58254
-14.16479 -14.02208 -13.54079 -13.40951 -13.26856 -12.82640 -12.62149 -12.46919
-12.18217 -11.95993 -11.78643 -11.61945 -11.45508 -11.23605 -11.10158 -11.06283
-10.80556 -10.73521 -10.70752 -10.67090 -10.49458 -10.28657 -10.12288 -10.11656
-9.98359 -9.66964 -9.07141 -8.74994 -8.43714 -8.18532 -6.92104 -6.03246
-4.08821 1.26950 1.43685 2.40187 2.90226 3.12191 3.29054 3.37066
3.40923 3.71962 4.11343 4.22488 4.43795 4.58607 4.62607 4.75143
4.99969 5.01837 5.04948 5.08078 5.23249 5.29663 5.30599 5.33838
5.49666 5.61394 5.73778 5.79678 5.81406 5.83828 5.93253 5.98278
6.00024 6.02302 6.08114 6.24465 6.31739 6.34515 6.40168 6.63787
6.65875 6.71887 6.77047 6.77553 6.95901 7.13479 7.37226 7.46045
7.73273 7.89429 7.91446 8.20798 8.24988 8.80361 8.99026 9.55682
11.02733
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.008333 B = 0.004968 C = 0.003462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3359.238919 B = 5635.244778 C = 8085.480365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.076 3.924
3 H 0.119 0.881
4 C 0.490 3.510
5 O -0.530 6.530
6 N -0.647 5.647
7 C -0.085 4.085
8 C 0.175 3.825
9 N -0.549 5.549
10 C 0.574 3.426
11 N -0.550 5.550
12 C 0.254 3.746
13 C -0.519 4.519
14 H 0.056 0.944
15 C 0.065 3.935
16 N -0.894 5.894
17 Si 0.894 3.106
18 H -0.275 1.275
19 H -0.284 1.284
20 H -0.283 1.283
21 C 0.162 3.838
22 C -0.129 4.129
23 C -0.114 4.114
24 C -0.111 4.111
25 C -0.120 4.120
26 N -0.504 5.504
27 C 0.377 3.623
28 N -0.476 5.476
29 C 0.031 3.969
30 H 0.066 0.934
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.408 0.592
34 H 0.161 0.839
35 H 0.033 0.967
36 H 0.052 0.948
37 H 0.262 0.738
38 H 0.091 0.909
39 H 0.079 0.921
40 H 0.056 0.944
41 H 0.058 0.942
42 H 0.058 0.942
43 H 0.048 0.952
44 H 0.076 0.924
45 H 0.058 0.942
46 H 0.066 0.934
47 H 0.031 0.969
48 H 0.089 0.911
49 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.165 -6.442 13.277 14.803
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.036 4.036
3 H 0.137 0.863
4 C 0.275 3.725
5 O -0.404 6.404
6 N -0.295 5.295
7 C -0.192 4.192
8 C 0.004 3.996
9 N -0.273 5.273
10 C 0.218 3.782
11 N -0.260 5.260
12 C 0.135 3.865
13 C -0.558 4.558
14 H 0.074 0.926
15 C -0.137 4.137
16 N -0.533 5.533
17 Si 0.722 3.278
18 H -0.200 1.200
19 H -0.211 1.211
20 H -0.209 1.209
21 C 0.058 3.942
22 C -0.168 4.168
23 C -0.152 4.152
24 C -0.149 4.149
25 C -0.158 4.158
26 N -0.226 5.226
27 C 0.129 3.871
28 N -0.197 5.197
29 C -0.115 4.115
30 H 0.084 0.916
31 H 0.097 0.903
32 H 0.099 0.901
33 H 0.246 0.754
34 H 0.178 0.822
35 H 0.051 0.949
36 H 0.070 0.930
37 H 0.072 0.928
38 H 0.109 0.891
39 H 0.097 0.903
40 H 0.075 0.925
41 H 0.077 0.923
42 H 0.077 0.923
43 H 0.067 0.933
44 H 0.094 0.906
45 H 0.077 0.923
46 H 0.084 0.916
47 H 0.049 0.951
48 H 0.108 0.892
49 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges 1.145 -5.997 11.933 13.404
hybrid contribution -0.104 0.547 1.440 1.544
sum 1.041 -5.449 13.374 14.479
Atomic orbital electron populations
1.21820 0.90272 1.03508 1.03786 1.21981 0.98544 0.99504 0.83550
0.86291 1.21895 0.80825 0.78905 0.90877 1.90728 1.55585 1.58803
1.35311 1.43497 1.16526 1.56296 1.13178 1.19475 0.94636 1.16976
0.88101 1.22353 0.87971 0.92715 0.96512 1.68350 1.38359 1.23043
0.97553 1.19216 0.84333 0.88110 0.86542 1.47239 1.05753 1.68000
1.05011 1.19456 0.93901 0.96157 0.77002 1.21408 1.37372 0.91712
1.05321 0.92602 1.24867 0.95090 0.97979 0.95808 1.69931 1.38251
1.34637 1.10458 0.86503 0.77796 0.85599 0.77866 1.19966 1.21053
1.20896 1.21594 0.79245 0.93781 0.99612 1.22758 0.98361 0.96617
0.99054 1.22335 0.97028 0.97321 0.98519 1.22243 0.98900 0.94803
0.98906 1.22376 0.99235 0.97802 0.96434 1.67799 1.05902 1.20031
1.28889 1.18950 0.89588 0.91950 0.86610 1.57899 1.01019 1.24867
1.35933 1.22521 0.99600 0.87621 1.01737 0.91550 0.90326 0.90077
0.75406 0.82158 0.94925 0.93032 0.92827 0.89057 0.90280 0.92525
0.92336 0.92304 0.93296 0.90581 0.92349 0.91572 0.95078 0.89207
0.89707
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.45 7.98 37.16 0.30 -1.15 16
2 C 0.08 0.99 3.05 -69.04 -0.21 0.78 16
3 H 0.12 1.56 8.14 -51.93 -0.42 1.14 16
4 C 0.49 6.65 6.94 -10.78 -0.07 6.58 16
5 O -0.53 -8.24 16.95 5.54 0.09 -8.14 16
6 N -0.65 -7.90 5.52 -9.56 -0.05 -7.95 16
7 C -0.09 -1.21 6.53 -83.34 -0.54 -1.75 16
8 C 0.18 2.33 11.24 -17.16 -0.19 2.14 16
9 N -0.55 -8.83 4.94 -13.89 -0.07 -8.89 16
10 C 0.57 11.19 7.06 -322.61 -2.28 8.91 16
11 N -0.55 -11.28 2.49 -168.47 -0.42 -11.70 16
12 C 0.25 6.26 5.14 -5.19 -0.03 6.23 16
13 C -0.52 -14.04 9.39 -34.44 -0.32 -14.36 16
14 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16
15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16
16 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16
17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16
18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16
19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
21 C 0.16 2.80 3.35 -66.81 -0.22 2.57 16
22 C -0.13 -1.88 6.04 -25.03 -0.15 -2.03 16
23 C -0.11 -1.38 6.91 -24.70 -0.17 -1.56 16
24 C -0.11 -1.44 6.33 -25.07 -0.16 -1.60 16
25 C -0.12 -1.91 5.76 -25.61 -0.15 -2.06 16
26 N -0.50 -10.31 9.14 -13.13 -0.12 -10.43 16
27 C 0.38 6.42 5.91 -155.08 -0.92 5.50 16
28 N -0.48 -7.27 4.85 -174.86 -0.85 -8.12 16
29 C 0.03 0.40 8.59 60.06 0.52 0.92 16
30 H 0.07 0.67 6.28 -51.92 -0.33 0.34 16
31 H 0.08 0.81 7.85 -51.93 -0.41 0.40 16
32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16
33 H 0.41 4.00 8.92 -40.82 -0.36 3.63 16
34 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16
35 H 0.03 0.83 7.93 -51.93 -0.41 0.42 16
36 H 0.05 1.40 7.32 -51.93 -0.38 1.02 16
37 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16
38 H 0.09 1.61 7.82 -51.93 -0.41 1.21 16
39 H 0.08 1.25 5.99 -51.93 -0.31 0.94 16
40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
43 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16
44 H 0.08 1.01 6.94 -51.93 -0.36 0.65 16
45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
46 H 0.07 1.23 7.08 -51.93 -0.37 0.86 16
47 H 0.03 0.38 7.66 -51.93 -0.40 -0.02 16
48 H 0.09 0.95 6.09 -51.93 -0.32 0.63 16
49 H 0.08 1.19 8.12 -51.93 -0.42 0.76 16
LS Contribution 382.87 15.07 5.77 5.77
Total: -1.00 -31.09 382.87 -12.03 -43.12
By element:
Atomic # 1 Polarization: 11.29 SS G_CDS: -7.40 Total: 3.89 kcal
Atomic # 6 Polarization: 15.52 SS G_CDS: -4.70 Total: 10.82 kcal
Atomic # 7 Polarization: -71.17 SS G_CDS: -0.77 Total: -71.94 kcal
Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.14 kcal
Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -31.09 -12.03 -43.12 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166533826.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.501 kcal
(2) G-P(sol) polarization free energy of solvation -31.093 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.408 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.029 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.379 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds