Wall clock time and date at job start Wed Apr 1 2020 04:04:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09006 * 109.33259 * 2 1
4 4 C 1.50670 * 109.33984 * 119.52132 * 2 1 3
5 5 O 1.21302 * 120.31673 * 335.28448 * 4 2 1
6 6 N 1.35272 * 119.36839 * 155.25821 * 4 2 1
7 7 C 1.40318 * 118.26555 * 358.68484 * 6 4 2
8 8 C 1.38205 * 121.31732 * 162.25801 * 7 6 4
9 9 N 1.32761 * 118.78525 * 180.29816 * 8 7 6
10 10 C 1.32399 * 120.94500 * 0.02562 * 9 8 7
11 11 N 1.38582 * 118.98277 * 179.97438 * 10 9 8
12 12 C 1.46503 * 120.00310 * 180.02562 * 11 10 9
13 13 C 1.50699 * 109.47206 * 89.99681 * 12 11 10
14 14 H 1.08006 * 120.00167 * 0.02562 * 13 12 11
15 15 C 1.37878 * 120.00041 * 180.02562 * 13 12 11
16 16 N 1.31515 * 119.99699 * 359.97438 * 15 13 12
17 17 Si 1.86802 * 119.99966 * 179.97438 * 15 13 12
18 18 H 1.48501 * 109.47230 * 359.97438 * 17 15 13
19 19 H 1.48506 * 109.46782 * 120.00216 * 17 15 13
20 20 H 1.48497 * 109.47131 * 239.99619 * 17 15 13
21 21 C 1.46504 * 120.00185 * 359.97438 * 11 10 9
22 22 C 1.54263 * 110.03261 * 57.90807 * 21 11 10
23 23 C 1.54962 * 104.16471 * 217.14228 * 22 21 11
24 24 C 1.54889 * 102.77640 * 37.88584 * 23 22 21
25 25 C 1.53882 * 110.03126 * 300.69405 * 21 11 10
26 26 N 1.32543 * 122.03697 * 359.93957 * 10 9 8
27 27 C 1.32791 * 120.42314 * 359.97438 * 26 10 9
28 28 N 1.38282 * 120.88718 * 180.20658 * 27 26 10
29 29 C 1.46896 * 110.99981 * 90.63567 * 28 27 26
30 30 H 1.09009 * 109.46821 * 179.67799 * 1 2 3
31 31 H 1.08997 * 109.47455 * 299.67753 * 1 2 3
32 32 H 1.08997 * 109.47271 * 59.68035 * 1 2 3
33 33 H 0.97000 * 120.86933 * 178.65634 * 6 4 2
34 34 H 1.07996 * 120.60514 * 0.02562 * 8 7 6
35 35 H 1.09000 * 109.47066 * 209.99546 * 12 11 10
36 36 H 1.08996 * 109.46785 * 329.99592 * 12 11 10
37 37 H 0.96999 * 119.99327 * 180.02562 * 16 15 13
38 38 H 1.08998 * 110.02192 * 179.30482 * 21 11 10
39 39 H 1.09005 * 110.48680 * 335.79247 * 22 21 11
40 40 H 1.09002 * 110.48903 * 98.42433 * 22 21 11
41 41 H 1.08998 * 110.71519 * 279.57195 * 23 22 21
42 42 H 1.08997 * 110.92678 * 156.29734 * 23 22 21
43 43 H 1.08996 * 110.48449 * 203.40531 * 24 23 22
44 44 H 1.08999 * 110.59595 * 80.82310 * 24 23 22
45 45 H 1.08997 * 110.03143 * 238.56550 * 25 21 11
46 46 H 1.09004 * 110.02892 * 359.95346 * 25 21 11
47 47 H 1.09003 * 109.47427 * 63.95227 * 29 28 27
48 48 H 1.09002 * 109.47318 * 183.95121 * 29 28 27
49 49 H 1.08999 * 109.47309 * 303.95584 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8909 1.0286 0.0000
4 6 2.0290 -0.7005 1.2371
5 8 1.3343 -0.7595 2.2297
6 7 3.2590 -1.2636 1.2301
7 6 4.0146 -1.1948 0.0498
8 6 5.3799 -1.4094 0.0574
9 7 6.0465 -1.3260 -1.0877
10 6 5.4217 -1.0424 -2.2201
11 7 6.1576 -0.9650 -3.3919
12 6 5.4891 -0.6522 -4.6574
13 6 5.4769 0.8406 -4.8634
14 1 5.9229 1.4913 -4.1257
15 6 4.8964 1.3758 -5.9938
16 7 4.3538 0.5835 -6.8923
17 14 4.8806 3.2263 -6.2488
18 1 5.5497 3.8899 -5.1011
19 1 5.6023 3.5591 -7.5033
20 1 3.4768 3.7008 -6.3446
21 6 7.6042 -1.1949 -3.3649
22 6 7.9062 -2.5949 -2.7916
23 6 9.1940 -2.3918 -1.9540
24 6 8.9721 -0.9975 -1.3170
25 6 8.2819 -0.1796 -2.4281
26 7 4.1141 -0.8310 -2.2678
27 6 3.3812 -0.8992 -1.1626
28 7 2.0157 -0.6845 -1.2020
29 6 1.2909 -1.9434 -1.4200
30 1 -0.3633 -1.0277 -0.0058
31 1 -0.3634 0.5088 0.8928
32 1 -0.3633 0.5188 -0.8871
33 1 3.6096 -1.7031 2.0206
34 1 5.8957 -1.6363 0.9786
35 1 6.0251 -1.1279 -5.4787
36 1 4.4647 -1.0234 -4.6286
37 1 3.9457 0.9600 -7.6877
38 1 8.0149 -1.1068 -4.3707
39 1 7.0871 -2.9317 -2.1562
40 1 8.0827 -3.3072 -3.5976
41 1 10.0749 -2.3875 -2.5959
42 1 9.2826 -3.1585 -1.1842
43 1 9.9263 -0.5452 -1.0471
44 1 8.3262 -1.0739 -0.4423
45 1 9.0220 0.4007 -2.9791
46 1 7.5345 0.4847 -1.9942
47 1 1.4565 -2.6094 -0.5731
48 1 0.2250 -1.7370 -1.5168
49 1 1.6534 -2.4182 -2.3317
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001166533826.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:04:21
Heat of formation + Delta-G solvation = 38.747330 kcal
Electronic energy + Delta-G solvation = -32090.906882 eV
Core-core repulsion = 28053.344542 eV
Total energy + Delta-G solvation = -4037.562340 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 0.97 seconds
Orbital eigenvalues (eV)
-42.94462 -41.18771 -39.45134 -38.29741 -36.81511 -35.93727 -34.36711 -34.25956
-31.76057 -30.40643 -29.56171 -29.44083 -28.34148 -27.52963 -25.35836 -24.72447
-24.31662 -23.31670 -21.50300 -21.27215 -20.27171 -19.25302 -19.07637 -18.58164
-18.07685 -17.81456 -17.24756 -16.59378 -16.47964 -16.35359 -16.31339 -15.78887
-15.37507 -15.26792 -14.89795 -14.64320 -14.48745 -14.36368 -13.96595 -13.45987
-13.42571 -13.31832 -13.06619 -13.02891 -12.87504 -12.66449 -12.57850 -12.39834
-12.29492 -12.24767 -11.99880 -11.83256 -11.76506 -11.71096 -11.58042 -11.49446
-11.36386 -11.17160 -10.58697 -10.32297 -10.11722 -9.43828 -8.44142 -8.04528
-6.28132 -0.01392 0.23079 1.26319 1.36328 1.38487 1.49022 1.81370
1.86693 2.35305 2.47032 2.91701 2.99276 3.13705 3.42696 3.54625
3.65907 3.78132 3.89402 3.91828 4.02568 4.15032 4.19186 4.29579
4.34142 4.59901 4.66539 4.71772 4.72221 4.78757 4.80818 4.82902
4.90057 5.00163 5.12277 5.13277 5.16566 5.23093 5.25364 5.33067
5.33861 5.44846 5.47474 5.59855 5.67634 5.71970 5.74198 5.93453
6.07427 6.13685 6.26958 6.69624 6.81238 6.87197 7.37201 7.53067
8.90234
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.008333 B = 0.004968 C = 0.003462
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3359.238919 B = 5635.244778 C = 8085.480365
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.073 3.927
3 H 0.115 0.885
4 C 0.494 3.506
5 O -0.545 6.545
6 N -0.633 5.633
7 C -0.069 4.069
8 C 0.183 3.817
9 N -0.539 5.539
10 C 0.560 3.440
11 N -0.566 5.566
12 C 0.278 3.722
13 C -0.524 4.524
14 H 0.042 0.958
15 C 0.017 3.983
16 N -0.924 5.924
17 Si 0.956 3.044
18 H -0.275 1.275
19 H -0.273 1.273
20 H -0.280 1.280
21 C 0.154 3.846
22 C -0.122 4.122
23 C -0.103 4.103
24 C -0.101 4.101
25 C -0.115 4.115
26 N -0.555 5.555
27 C 0.359 3.641
28 N -0.495 5.495
29 C 0.035 3.965
30 H 0.073 0.927
31 H 0.084 0.916
32 H 0.086 0.914
33 H 0.423 0.577
34 H 0.212 0.788
35 H 0.014 0.986
36 H 0.019 0.981
37 H 0.265 0.735
38 H 0.075 0.925
39 H 0.068 0.932
40 H 0.059 0.941
41 H 0.071 0.929
42 H 0.080 0.920
43 H 0.068 0.932
44 H 0.076 0.924
45 H 0.059 0.941
46 H 0.036 0.964
47 H 0.038 0.962
48 H 0.113 0.887
49 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.033 -6.610 15.886 17.325
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.038 4.038
3 H 0.133 0.867
4 C 0.280 3.720
5 O -0.421 6.421
6 N -0.282 5.282
7 C -0.175 4.175
8 C 0.013 3.987
9 N -0.262 5.262
10 C 0.204 3.796
11 N -0.278 5.278
12 C 0.156 3.844
13 C -0.563 4.563
14 H 0.060 0.940
15 C -0.182 4.182
16 N -0.564 5.564
17 Si 0.781 3.219
18 H -0.199 1.199
19 H -0.198 1.198
20 H -0.206 1.206
21 C 0.050 3.950
22 C -0.160 4.160
23 C -0.141 4.141
24 C -0.139 4.139
25 C -0.154 4.154
26 N -0.279 5.279
27 C 0.113 3.887
28 N -0.216 5.216
29 C -0.110 4.110
30 H 0.092 0.908
31 H 0.103 0.897
32 H 0.105 0.895
33 H 0.264 0.736
34 H 0.228 0.772
35 H 0.032 0.968
36 H 0.037 0.963
37 H 0.074 0.926
38 H 0.093 0.907
39 H 0.086 0.914
40 H 0.078 0.922
41 H 0.089 0.911
42 H 0.098 0.902
43 H 0.087 0.913
44 H 0.095 0.905
45 H 0.077 0.923
46 H 0.055 0.945
47 H 0.057 0.943
48 H 0.131 0.869
49 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 2.006 -6.185 14.613 15.994
hybrid contribution -0.443 0.576 0.728 1.028
sum 1.563 -5.609 15.341 16.408
Atomic orbital electron populations
1.21814 0.88371 1.04198 1.04386 1.22098 1.00060 0.98961 0.82687
0.86698 1.21899 0.80894 0.78651 0.90579 1.90731 1.56002 1.59520
1.35848 1.43347 1.15966 1.55920 1.12975 1.19432 0.95063 1.15221
0.87804 1.23163 0.87766 0.90700 0.97097 1.68412 1.38064 1.22448
0.97269 1.19265 0.84258 0.88993 0.87089 1.46966 1.06816 1.69765
1.04239 1.18789 0.92237 0.94522 0.78808 1.21572 1.36944 0.92863
1.04923 0.93982 1.25631 0.94789 1.02206 0.95616 1.70034 1.39043
1.36418 1.10953 0.85549 0.77815 0.80501 0.77991 1.19947 1.19838
1.20609 1.21803 0.77644 0.96068 0.99451 1.22676 0.99393 0.94691
0.99262 1.22309 0.95833 0.97245 0.98668 1.22190 0.99385 0.94743
0.97546 1.22318 0.98479 0.97432 0.97189 1.67690 1.06919 1.22038
1.31284 1.19217 0.90299 0.92231 0.86910 1.57901 1.00610 1.25956
1.37173 1.22532 1.00545 0.86895 1.01027 0.90794 0.89675 0.89486
0.73553 0.77160 0.96812 0.96315 0.92595 0.90671 0.91379 0.92222
0.91066 0.90171 0.91306 0.90516 0.92266 0.94518 0.94342 0.86912
0.91670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.57 7.98 71.98 0.57 -2.00 16
2 C 0.07 1.84 3.05 44.22 0.13 1.98 16
3 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16
4 C 0.49 12.47 6.94 87.57 0.61 13.07 16
5 O -0.55 -15.75 16.95 -3.10 -0.05 -15.80 16
6 N -0.63 -13.83 5.52 -302.26 -1.67 -15.50 16
7 C -0.07 -1.83 6.53 38.19 0.25 -1.58 16
8 C 0.18 4.40 11.24 84.54 0.95 5.35 16
9 N -0.54 -16.79 4.94 -197.86 -0.98 -17.77 16
10 C 0.56 22.43 7.06 261.42 1.84 24.28 16
11 N -0.57 -24.37 2.49 -686.93 -1.71 -26.08 16
12 C 0.28 14.61 5.14 85.63 0.44 15.05 16
13 C -0.52 -29.67 9.39 25.60 0.24 -29.43 16
14 H 0.04 2.44 7.81 -2.91 -0.02 2.42 16
15 C 0.02 0.94 5.46 84.65 0.46 1.41 16
16 N -0.92 -54.75 13.29 21.45 0.28 -54.46 16
17 Si 0.96 45.03 29.54 68.60 2.03 47.06 16
18 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
19 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16
20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
21 C 0.15 5.45 3.35 45.72 0.15 5.60 16
22 C -0.12 -3.44 6.04 31.69 0.19 -3.25 16
23 C -0.10 -2.20 6.91 31.91 0.22 -1.98 16
24 C -0.10 -2.36 6.33 31.67 0.20 -2.16 16
25 C -0.12 -3.66 5.76 31.32 0.18 -3.48 16
26 N -0.56 -23.65 9.14 -195.46 -1.79 -25.44 16
27 C 0.36 12.29 5.91 133.39 0.79 13.08 16
28 N -0.50 -15.11 4.85 -707.15 -3.43 -18.54 16
29 C 0.04 0.90 8.59 127.69 1.10 2.00 16
30 H 0.07 1.34 6.28 -2.38 -0.01 1.33 16
31 H 0.08 1.59 7.85 -2.39 -0.02 1.57 16
32 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16
33 H 0.42 6.81 8.92 -92.71 -0.83 5.98 16
34 H 0.21 2.89 8.06 -2.91 -0.02 2.86 16
35 H 0.01 0.76 7.93 -2.39 -0.02 0.74 16
36 H 0.02 1.10 7.32 -2.39 -0.02 1.08 16
37 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16
38 H 0.08 2.81 7.82 -2.39 -0.02 2.79 16
39 H 0.07 2.09 5.99 -2.38 -0.01 2.08 16
40 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16
43 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
44 H 0.08 1.79 6.94 -2.39 -0.02 1.78 16
45 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
46 H 0.04 1.37 7.08 -2.39 -0.02 1.35 16
47 H 0.04 0.90 7.66 -2.39 -0.02 0.88 16
48 H 0.11 2.28 6.09 -2.39 -0.01 2.26 16
49 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16
Total: -1.00 -70.69 382.87 1.18 -69.52
By element:
Atomic # 1 Polarization: 18.93 SS G_CDS: 0.15 Total: 19.08 kcal
Atomic # 6 Polarization: 29.60 SS G_CDS: 8.33 Total: 37.93 kcal
Atomic # 7 Polarization: -148.50 SS G_CDS: -9.29 Total: -157.79 kcal
Atomic # 8 Polarization: -15.75 SS G_CDS: -0.05 Total: -15.80 kcal
Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal
Total: -70.69 1.18 -69.52 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166533826.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.263 kcal
(2) G-P(sol) polarization free energy of solvation -70.690 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.572 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.97 seconds