Wall clock time and date at job start Wed Apr 1 2020 04:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 C 1.52998 * 109.46981 * 240.00202 * 2 1 3 5 5 C 1.53006 * 109.46852 * 174.99976 * 4 2 1 6 6 C 1.52998 * 109.46852 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47143 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47284 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99984 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00108 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00158 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99669 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47143 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47013 * 119.99414 * 13 11 9 16 16 H 1.48502 * 109.46846 * 239.99505 * 13 11 9 17 17 N 1.46496 * 109.47010 * 120.00107 * 2 1 3 18 18 C 1.34779 * 120.00343 * 274.99741 * 17 2 1 19 19 O 1.21593 * 119.99610 * 0.02562 * 18 17 2 20 20 C 1.47528 * 120.00295 * 179.97438 * 18 17 2 21 21 C 1.39412 * 120.75526 * 352.41801 * 20 18 17 22 22 N 1.31918 * 121.01507 * 179.97438 * 21 20 18 23 23 C 1.31789 * 122.60498 * 0.02677 * 22 21 20 24 24 C 1.39440 * 120.62857 * 359.95291 * 23 22 21 25 25 N 1.35704 * 134.42740 * 180.02562 * 24 23 22 26 26 C 1.30129 * 109.49953 * 179.97438 * 25 24 23 27 27 N 1.36261 * 110.06062 * 359.97438 * 26 25 24 28 28 C 1.46504 * 126.30043 * 179.97438 * 27 26 25 29 29 C 1.36923 * 107.40376 * 359.97438 * 27 26 25 30 30 H 1.09006 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47327 * 300.00071 * 1 2 3 32 32 H 1.09005 * 109.47670 * 59.99861 * 1 2 3 33 33 H 1.09000 * 109.47252 * 294.99868 * 4 2 1 34 34 H 1.08997 * 109.47112 * 55.00154 * 4 2 1 35 35 H 1.08999 * 109.46889 * 299.99480 * 5 4 2 36 36 H 1.08997 * 109.47116 * 60.00181 * 5 4 2 37 37 H 1.09000 * 109.47252 * 299.99893 * 6 5 4 38 38 H 1.09001 * 109.47615 * 59.99648 * 6 5 4 39 39 H 1.08991 * 109.47266 * 300.00167 * 7 6 5 40 40 H 1.09006 * 109.46898 * 59.99936 * 7 6 5 41 41 H 0.96998 * 120.00107 * 0.02562 * 8 7 6 42 42 H 0.96998 * 119.99818 * 180.02562 * 12 11 9 43 43 H 0.97005 * 119.99931 * 95.00285 * 17 2 1 44 44 H 1.07995 * 119.48989 * 359.69815 * 21 20 18 45 45 H 1.08000 * 119.68542 * 179.97438 * 23 22 21 46 46 H 1.08007 * 124.97406 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47482 * 258.22594 * 28 27 26 48 48 H 1.09004 * 109.46604 * 18.22551 * 28 27 26 49 49 H 1.08995 * 109.47054 * 138.22363 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5626 7 6 5.5996 -1.2265 -2.6274 8 7 6.0880 -1.9181 -3.8230 9 6 7.4301 -1.9546 -4.0925 10 1 8.1285 -1.4732 -3.4240 11 6 7.8929 -2.6095 -5.2256 12 7 7.0417 -3.1957 -6.0407 13 14 9.7238 -2.6599 -5.5930 14 1 10.4621 -1.9319 -4.5300 15 1 10.1813 -4.0720 -5.6358 16 1 9.9832 -2.0154 -6.9055 17 7 2.0183 -0.6906 1.1961 18 6 2.1470 -0.0183 2.3571 19 8 1.8575 1.1614 2.4119 20 6 2.6382 -0.7140 3.5618 21 6 2.8244 -2.0956 3.5612 22 7 3.2638 -2.7228 4.6353 23 6 3.5493 -2.0940 5.7578 24 6 3.3958 -0.7116 5.8565 25 7 3.5988 0.1987 6.8423 26 6 3.2954 1.3865 6.4058 27 7 2.8783 1.3161 5.1105 28 6 2.4512 2.4408 4.2745 29 6 2.9317 0.0007 4.7340 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2616 -2.1369 35 1 3.8531 0.4371 -1.3574 36 1 3.9994 -1.0728 -0.4260 37 1 3.7865 -2.3852 -2.5185 38 1 3.6402 -0.8759 -3.4506 39 1 5.8876 -0.1762 -2.6717 40 1 6.0346 -1.6853 -1.7395 41 1 5.4608 -2.3501 -4.4236 42 1 7.3651 -3.6536 -6.8322 43 1 2.2490 -1.6318 1.1525 44 1 2.6012 -2.6617 2.6690 45 1 3.9058 -2.6547 6.6092 46 1 3.3642 2.2953 6.9854 47 1 1.3628 2.4603 4.2199 48 1 2.8100 3.3736 4.7096 49 1 2.8633 2.3254 3.2721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171340370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:08 Heat of formation + Delta-G solvation = 56.903822 kcal Electronic energy + Delta-G solvation = -29440.898217 eV Core-core repulsion = 25404.123202 eV Total energy + Delta-G solvation = -4036.775015 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.89168 -40.26450 -38.81980 -37.16734 -35.36480 -34.50124 -33.47531 -32.49922 -31.31144 -30.48646 -29.96158 -27.55632 -27.49534 -25.29028 -24.23288 -23.33684 -22.86699 -21.93534 -20.97778 -20.71169 -20.58911 -18.28166 -18.08809 -17.65844 -17.01398 -16.64363 -16.39506 -15.73994 -15.38797 -15.17756 -15.12593 -14.79884 -14.66379 -14.07892 -14.05133 -13.98120 -13.60509 -13.21015 -13.14240 -13.05017 -12.96791 -12.75433 -12.53351 -12.28697 -11.83038 -11.53916 -11.29005 -11.06927 -11.04066 -10.88185 -10.82459 -10.75167 -10.52280 -10.43227 -10.34247 -9.97662 -9.76529 -9.68008 -9.36998 -9.34149 -8.86587 -8.74316 -6.90657 -5.75823 -3.04204 -0.04639 0.95117 1.99288 2.15308 2.66002 2.74688 3.43782 3.48219 3.49306 3.51699 3.64500 3.88037 3.98125 4.33293 4.39577 4.48299 4.52739 4.62073 4.64669 4.79505 4.88740 4.93003 5.08980 5.15361 5.17742 5.30052 5.36029 5.45026 5.51977 5.57849 5.60160 5.67194 5.73024 5.81852 5.86416 5.89455 5.97613 6.03553 6.15021 6.26703 6.29270 6.36283 6.43605 6.55144 6.87763 6.91600 7.09695 7.19663 7.51959 7.71266 7.81381 8.43625 9.54448 10.13404 10.47936 11.47351 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.002052 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.668899 B =13639.670033 C =14751.517557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.091 0.909 4 C -0.128 4.128 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.711 5.711 18 C 0.568 3.432 19 O -0.544 6.544 20 C -0.180 4.180 21 C 0.140 3.860 22 N -0.489 5.489 23 C 0.202 3.798 24 C -0.019 4.019 25 N -0.479 5.479 26 C 0.260 3.740 27 N -0.473 5.473 28 C 0.079 3.921 29 C 0.126 3.874 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.401 0.599 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.221 0.779 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.572 9.436 24.463 31.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.109 0.891 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.362 5.362 18 C 0.356 3.644 19 O -0.425 6.425 20 C -0.189 4.189 21 C -0.012 4.012 22 N -0.199 5.199 23 C 0.036 3.964 24 C -0.140 4.140 25 N -0.198 5.198 26 C -0.026 4.026 27 N -0.160 5.160 28 C -0.062 4.062 29 C 0.005 3.995 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.237 0.763 44 H 0.183 0.817 45 H 0.188 0.812 46 H 0.237 0.763 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.271 9.332 25.090 31.326 hybrid contribution 0.518 0.577 -1.249 1.471 sum -15.753 9.909 23.840 30.244 Atomic orbital electron populations 1.22175 0.95126 1.02275 1.02525 1.21102 0.93855 0.97709 0.83514 0.89135 1.21961 0.96934 1.01084 0.96627 1.21526 0.93881 1.01088 0.98762 1.21725 0.97279 1.00322 0.97024 1.20645 0.90991 0.95287 0.90607 1.42393 1.05360 1.64891 1.25252 1.19295 0.83916 1.28266 1.05430 0.91202 1.24757 0.97759 1.00984 0.97722 1.69673 1.32683 1.40802 1.15185 0.86108 0.85057 0.77252 0.77754 1.20565 1.21823 1.21859 1.46081 1.66370 1.14199 1.09536 1.17986 0.77265 0.86418 0.82734 1.90707 1.51498 1.15190 1.85099 1.19883 1.11038 0.94755 0.93210 1.22773 0.92365 0.89265 0.96793 1.67715 1.13707 1.39097 0.99333 1.22364 0.90636 0.87931 0.95445 1.20185 1.07125 0.95976 0.90762 1.70488 1.22139 0.98411 1.28718 1.25648 0.96065 0.98588 0.82281 1.45312 1.51757 1.06423 1.12485 1.22637 1.02161 0.84709 0.96658 1.18682 0.99952 0.85273 0.95565 0.92344 0.92312 0.91351 0.91157 0.89997 0.92020 0.92158 0.92033 0.92029 0.96644 0.96624 0.78340 0.93585 0.76334 0.81730 0.81170 0.76303 0.90228 0.90651 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.14 1.18 2.57 -67.94 -0.17 1.00 16 3 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 4 C -0.13 -1.11 4.75 -26.73 -0.13 -1.24 16 5 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 6 C -0.13 -1.93 5.33 -26.73 -0.14 -2.07 16 7 C 0.15 3.11 6.26 -4.04 -0.03 3.08 16 8 N -0.74 -19.13 5.60 -59.91 -0.34 -19.46 16 9 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 10 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.67 13.06 55.49 0.72 -27.94 16 13 Si 0.91 22.74 29.55 -169.99 -5.02 17.71 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 17 N -0.71 -5.76 4.48 -54.86 -0.25 -6.01 16 18 C 0.57 5.65 7.72 -12.47 -0.10 5.55 16 19 O -0.54 -6.16 10.92 5.28 0.06 -6.10 16 20 C -0.18 -1.81 5.89 -104.86 -0.62 -2.43 16 21 C 0.14 1.27 10.69 -17.08 -0.18 1.09 16 22 N -0.49 -4.98 10.30 -12.65 -0.13 -5.11 16 23 C 0.20 1.96 11.25 -17.12 -0.19 1.76 16 24 C -0.02 -0.21 7.27 -84.73 -0.62 -0.83 16 25 N -0.48 -4.96 11.28 -12.00 -0.14 -5.10 16 26 C 0.26 1.99 12.49 -89.56 -1.12 0.87 16 27 N -0.47 -4.23 3.18 -122.87 -0.39 -4.62 16 28 C 0.08 0.57 9.25 59.85 0.55 1.12 16 29 C 0.13 1.37 6.81 -83.81 -0.57 0.80 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 10.38 7.67 -40.82 -0.31 10.06 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.40 2.57 6.73 -40.82 -0.27 2.30 16 44 H 0.17 1.01 6.49 -52.49 -0.34 0.67 16 45 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.22 0.61 8.06 -52.48 -0.42 0.19 16 47 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 48 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 49 H 0.12 1.09 5.55 -52.43 -0.29 0.80 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -35.66 401.32 -10.23 -45.89 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.46 Total: 5.87 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.34 Total: -1.19 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.51 Total: -68.24 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: 0.06 Total: -6.10 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.66 -10.23 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171340370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.796 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds