Wall clock time and date at job start Wed Apr 1 2020 04:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47262 * 2 1 4 4 C 1.52998 * 109.46981 * 240.00202 * 2 1 3 5 5 C 1.53006 * 109.46852 * 174.99976 * 4 2 1 6 6 C 1.52998 * 109.46852 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47143 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.47284 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99984 * 180.02562 * 8 7 6 10 10 H 1.08004 * 120.00108 * 359.97438 * 9 8 7 11 11 C 1.38816 * 120.00158 * 180.02562 * 9 8 7 12 12 N 1.31623 * 119.99669 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00066 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47143 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47013 * 119.99414 * 13 11 9 16 16 H 1.48502 * 109.46846 * 239.99505 * 13 11 9 17 17 N 1.46496 * 109.47010 * 120.00107 * 2 1 3 18 18 C 1.34779 * 120.00343 * 274.99741 * 17 2 1 19 19 O 1.21593 * 119.99610 * 0.02562 * 18 17 2 20 20 C 1.47528 * 120.00295 * 179.97438 * 18 17 2 21 21 C 1.39412 * 120.75526 * 352.41801 * 20 18 17 22 22 N 1.31918 * 121.01507 * 179.97438 * 21 20 18 23 23 C 1.31789 * 122.60498 * 0.02677 * 22 21 20 24 24 C 1.39440 * 120.62857 * 359.95291 * 23 22 21 25 25 N 1.35704 * 134.42740 * 180.02562 * 24 23 22 26 26 C 1.30129 * 109.49953 * 179.97438 * 25 24 23 27 27 N 1.36261 * 110.06062 * 359.97438 * 26 25 24 28 28 C 1.46504 * 126.30043 * 179.97438 * 27 26 25 29 29 C 1.36923 * 107.40376 * 359.97438 * 27 26 25 30 30 H 1.09006 * 109.47069 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47327 * 300.00071 * 1 2 3 32 32 H 1.09005 * 109.47670 * 59.99861 * 1 2 3 33 33 H 1.09000 * 109.47252 * 294.99868 * 4 2 1 34 34 H 1.08997 * 109.47112 * 55.00154 * 4 2 1 35 35 H 1.08999 * 109.46889 * 299.99480 * 5 4 2 36 36 H 1.08997 * 109.47116 * 60.00181 * 5 4 2 37 37 H 1.09000 * 109.47252 * 299.99893 * 6 5 4 38 38 H 1.09001 * 109.47615 * 59.99648 * 6 5 4 39 39 H 1.08991 * 109.47266 * 300.00167 * 7 6 5 40 40 H 1.09006 * 109.46898 * 59.99936 * 7 6 5 41 41 H 0.96998 * 120.00107 * 0.02562 * 8 7 6 42 42 H 0.96998 * 119.99818 * 180.02562 * 12 11 9 43 43 H 0.97005 * 119.99931 * 95.00285 * 17 2 1 44 44 H 1.07995 * 119.48989 * 359.69815 * 21 20 18 45 45 H 1.08000 * 119.68542 * 179.97438 * 23 22 21 46 46 H 1.08007 * 124.97406 * 179.97438 * 26 25 24 47 47 H 1.08996 * 109.47482 * 258.22594 * 28 27 26 48 48 H 1.09004 * 109.46604 * 18.22551 * 28 27 26 49 49 H 1.08995 * 109.47054 * 138.22363 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3137 6 6 4.0748 -1.3350 -2.5626 7 6 5.5996 -1.2265 -2.6274 8 7 6.0880 -1.9181 -3.8230 9 6 7.4301 -1.9546 -4.0925 10 1 8.1285 -1.4732 -3.4240 11 6 7.8929 -2.6095 -5.2256 12 7 7.0417 -3.1957 -6.0407 13 14 9.7238 -2.6599 -5.5930 14 1 10.4621 -1.9319 -4.5300 15 1 10.1813 -4.0720 -5.6358 16 1 9.9832 -2.0154 -6.9055 17 7 2.0183 -0.6906 1.1961 18 6 2.1470 -0.0183 2.3571 19 8 1.8575 1.1614 2.4119 20 6 2.6382 -0.7140 3.5618 21 6 2.8244 -2.0956 3.5612 22 7 3.2638 -2.7228 4.6353 23 6 3.5493 -2.0940 5.7578 24 6 3.3958 -0.7116 5.8565 25 7 3.5988 0.1987 6.8423 26 6 3.2954 1.3865 6.4058 27 7 2.8783 1.3161 5.1105 28 6 2.4512 2.4408 4.2745 29 6 2.9317 0.0007 4.7340 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2616 -2.1369 35 1 3.8531 0.4371 -1.3574 36 1 3.9994 -1.0728 -0.4260 37 1 3.7865 -2.3852 -2.5185 38 1 3.6402 -0.8759 -3.4506 39 1 5.8876 -0.1762 -2.6717 40 1 6.0346 -1.6853 -1.7395 41 1 5.4608 -2.3501 -4.4236 42 1 7.3651 -3.6536 -6.8322 43 1 2.2490 -1.6318 1.1525 44 1 2.6012 -2.6617 2.6690 45 1 3.9058 -2.6547 6.6092 46 1 3.3642 2.2953 6.9854 47 1 1.3628 2.4603 4.2199 48 1 2.8100 3.3736 4.7096 49 1 2.8633 2.3254 3.2721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171340370.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:07 Heat of formation + Delta-G solvation = 33.947589 kcal Electronic energy + Delta-G solvation = -29441.893674 eV Core-core repulsion = 25404.123202 eV Total energy + Delta-G solvation = -4037.770472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.55582 -40.98805 -39.51372 -38.09453 -36.87876 -35.18480 -34.83497 -33.52872 -32.54875 -31.60656 -30.74127 -28.82271 -28.15546 -26.13295 -25.73973 -24.04450 -23.91652 -23.09977 -22.04036 -21.69874 -21.29698 -19.14623 -18.96614 -18.75094 -18.33410 -17.35062 -17.10465 -16.70696 -16.43442 -16.28387 -15.98376 -15.87300 -15.50021 -15.36987 -15.27032 -14.73563 -14.64670 -14.57797 -14.23751 -14.07291 -13.68738 -13.44538 -13.23398 -13.19154 -12.92966 -12.88298 -12.85255 -12.46185 -12.23211 -12.12158 -11.89766 -11.81788 -11.75179 -11.60696 -11.46872 -11.38779 -11.23884 -10.96109 -10.48784 -10.07823 -10.04875 -9.43556 -9.02688 -7.98081 -5.27217 -0.73645 0.22220 1.33275 1.45785 1.46777 1.55449 1.57048 1.95475 2.05547 2.54037 2.75916 3.02404 3.22261 3.35355 3.38214 3.59678 3.70995 3.82978 3.91490 4.03198 4.05800 4.07448 4.14424 4.33385 4.36526 4.42162 4.50189 4.51904 4.60464 4.65137 4.74076 4.87008 4.88887 4.94189 4.96517 5.00461 5.02901 5.12878 5.22096 5.27793 5.31083 5.34293 5.44415 5.45153 5.53099 5.58360 5.97830 6.25283 6.43162 6.53780 6.81867 7.11299 7.30859 8.07540 8.30859 9.25725 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.002052 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.668899 B =13639.670033 C =14751.517557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.148 3.852 3 H 0.076 0.924 4 C -0.118 4.118 5 C -0.105 4.105 6 C -0.113 4.113 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.249 4.249 10 H 0.072 0.928 11 C -0.077 4.077 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.291 1.291 17 N -0.703 5.703 18 C 0.565 3.435 19 O -0.561 6.561 20 C -0.191 4.191 21 C 0.139 3.861 22 N -0.504 5.504 23 C 0.195 3.805 24 C -0.037 4.037 25 N -0.509 5.509 26 C 0.272 3.728 27 N -0.478 5.478 28 C 0.084 3.916 29 C 0.103 3.897 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.410 0.590 44 H 0.191 0.809 45 H 0.189 0.811 46 H 0.266 0.734 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.786 10.108 25.313 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.380 4.380 10 H 0.090 0.910 11 C -0.269 4.269 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.192 1.192 15 H -0.217 1.217 16 H -0.218 1.218 17 N -0.354 5.354 18 C 0.354 3.646 19 O -0.443 6.443 20 C -0.200 4.200 21 C -0.013 4.013 22 N -0.213 5.213 23 C 0.030 3.970 24 C -0.158 4.158 25 N -0.228 5.228 26 C -0.014 4.014 27 N -0.165 5.165 28 C -0.056 4.056 29 C -0.019 4.019 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.247 0.753 44 H 0.207 0.793 45 H 0.206 0.794 46 H 0.281 0.719 47 H 0.091 0.909 48 H 0.129 0.871 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.491 10.014 25.968 32.351 hybrid contribution 0.572 0.433 -1.454 1.621 sum -15.920 10.447 24.514 31.041 Atomic orbital electron populations 1.22110 0.94160 1.02854 1.02344 1.21011 0.94468 0.96890 0.83237 0.90564 1.21868 0.94551 1.02138 0.97049 1.21427 0.95938 1.00174 0.96775 1.21604 0.93579 1.01015 0.98860 1.20862 0.94413 0.94205 0.88386 1.42638 1.04526 1.65307 1.26713 1.19675 0.85344 1.27634 1.05387 0.90977 1.25612 1.02261 1.01215 0.97834 1.69819 1.34608 1.41890 1.15645 0.85053 0.79862 0.77121 0.77604 1.19208 1.21731 1.21774 1.46020 1.65851 1.14584 1.08993 1.18035 0.77234 0.86273 0.83106 1.90716 1.52295 1.15871 1.85419 1.19988 1.11575 0.95194 0.93211 1.23175 0.91564 0.89198 0.97339 1.67766 1.14332 1.39448 0.99795 1.22698 0.90347 0.87999 0.95953 1.20439 1.07643 0.96574 0.91152 1.70479 1.23771 0.99364 1.29181 1.26582 0.93656 0.99295 0.81855 1.45538 1.51687 1.06125 1.13102 1.22598 1.01640 0.85565 0.95814 1.19033 1.00491 0.86366 0.95976 0.91361 0.93617 0.90408 0.89760 0.89270 0.92470 0.91836 0.91857 0.92304 0.96936 0.96653 0.79369 0.93870 0.75261 0.79269 0.79402 0.71882 0.90946 0.87098 0.88608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 71.98 0.68 -1.38 16 2 C 0.15 2.22 2.57 44.99 0.12 2.34 16 3 H 0.08 1.41 7.58 -2.39 -0.02 1.39 16 4 C -0.12 -1.79 4.75 30.60 0.15 -1.64 16 5 C -0.10 -2.25 5.10 30.60 0.16 -2.09 16 6 C -0.11 -3.34 5.33 30.59 0.16 -3.17 16 7 C 0.15 5.96 6.26 86.38 0.54 6.50 16 8 N -0.75 -39.13 5.60 -343.45 -1.92 -41.06 16 9 C -0.25 -14.29 9.99 84.03 0.84 -13.45 16 10 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 11 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 12 N -0.97 -59.90 13.06 21.65 0.28 -59.62 16 13 Si 0.97 46.70 29.55 68.60 2.03 48.72 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 17 N -0.70 -10.49 4.48 -445.72 -2.00 -12.49 16 18 C 0.57 10.98 7.72 86.69 0.67 11.65 16 19 O -0.56 -12.65 10.92 -4.01 -0.04 -12.69 16 20 C -0.19 -3.80 5.89 -20.02 -0.12 -3.92 16 21 C 0.14 2.44 10.69 84.96 0.91 3.35 16 22 N -0.50 -10.09 10.30 -193.92 -2.00 -12.09 16 23 C 0.20 3.78 11.25 84.99 0.96 4.74 16 24 C -0.04 -0.81 7.27 39.46 0.29 -0.52 16 25 N -0.51 -10.21 11.28 -191.89 -2.16 -12.37 16 26 C 0.27 3.71 12.49 179.98 2.25 5.96 16 27 N -0.48 -8.13 3.18 -542.63 -1.73 -9.85 16 28 C 0.08 1.12 9.25 127.77 1.18 2.30 16 29 C 0.10 2.21 6.81 39.50 0.27 2.48 16 30 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.33 7.75 -2.39 -0.02 1.31 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.37 20.51 7.67 -92.71 -0.71 19.80 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.41 4.51 6.73 -92.70 -0.62 3.89 16 44 H 0.19 2.07 6.49 -2.91 -0.02 2.05 16 45 H 0.19 2.66 8.06 -2.91 -0.02 2.64 16 46 H 0.27 0.64 8.06 -2.91 -0.02 0.61 16 47 H 0.07 1.07 7.70 -2.39 -0.02 1.05 16 48 H 0.11 0.64 8.11 -2.38 -0.02 0.62 16 49 H 0.10 1.76 5.55 -10.27 -0.06 1.71 16 Total: -1.00 -77.53 401.32 1.57 -75.96 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.40 Total: 26.38 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 9.51 Total: 9.10 kcal Atomic # 7 Polarization: -137.95 SS G_CDS: -9.53 Total: -147.48 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.04 Total: -12.69 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -77.53 1.57 -75.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171340370.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.909 kcal (2) G-P(sol) polarization free energy of solvation -77.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds