Wall clock time and date at job start Wed Apr 1 2020 04:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47411 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46938 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99721 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00196 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46757 * 89.99429 * 13 11 9 15 15 H 1.48497 * 109.47059 * 209.99496 * 13 11 9 16 16 H 1.48499 * 109.46945 * 329.99854 * 13 11 9 17 17 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 2 1 19 19 O 1.21573 * 119.99937 * 0.28077 * 18 17 2 20 20 C 1.47717 * 119.99958 * 180.27848 * 18 17 2 21 21 C 1.40251 * 119.88522 * 0.02562 * 20 18 17 22 22 C 1.36161 * 120.56319 * 179.97438 * 21 20 18 23 23 C 1.39911 * 119.97599 * 0.02562 * 22 21 20 24 24 N 1.34742 * 134.59378 * 179.97438 * 23 22 21 25 25 N 1.28645 * 109.29639 * 180.02562 * 24 23 22 26 26 N 1.28816 * 111.78916 * 0.02562 * 25 24 23 27 27 C 1.46499 * 125.94580 * 179.97438 * 26 25 24 28 28 C 1.37374 * 108.11272 * 0.02562 * 26 25 24 29 29 C 1.38619 * 134.88375 * 180.32211 * 28 26 25 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 33 33 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 34 34 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 35 35 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 36 36 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 37 37 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 38 38 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 39 39 H 1.08997 * 109.47193 * 299.99893 * 7 6 5 40 40 H 1.08998 * 109.46968 * 60.00156 * 7 6 5 41 41 H 0.96995 * 119.99983 * 0.02562 * 8 7 6 42 42 H 0.97003 * 120.00102 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 2 1 44 44 H 1.08002 * 119.71550 * 359.97349 * 21 20 18 45 45 H 1.08002 * 120.01311 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.46806 * 90.02143 * 27 26 25 47 47 H 1.08997 * 109.47210 * 210.02786 * 27 26 25 48 48 H 1.09005 * 109.46694 * 330.02776 * 27 26 25 49 49 H 1.07997 * 120.24851 * 359.93200 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 6 5.5995 -1.2254 -2.6281 8 7 6.0878 -1.9161 -3.8243 9 6 7.4299 -1.9524 -4.0939 10 1 8.1284 -1.4715 -3.4250 11 6 7.8926 -2.6063 -5.2276 12 7 7.0414 -3.1919 -6.0430 13 14 9.7233 -2.6552 -5.5959 14 1 10.3239 -3.8559 -4.9611 15 1 9.9311 -2.7157 -7.0650 16 1 10.3699 -1.4331 -5.0543 17 7 2.0183 -0.6906 1.1962 18 6 2.1523 -0.0169 2.3557 19 8 1.8631 1.1627 2.4103 20 6 2.6505 -0.7117 3.5603 21 6 2.9839 -2.0725 3.4945 22 6 3.4448 -2.7265 4.5962 23 6 3.5888 -2.0405 5.8071 24 7 4.0038 -2.3802 7.0432 25 7 3.9409 -1.3498 7.8108 26 7 3.5062 -0.3120 7.1836 27 6 3.3131 1.0218 7.7580 28 6 3.2542 -0.6739 5.8825 29 6 2.7901 -0.0131 4.7558 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3574 36 1 3.9994 -1.0727 -0.4260 37 1 3.7863 -2.3843 -2.5200 38 1 3.6401 -0.8741 -3.4508 39 1 5.8875 -0.1751 -2.6715 40 1 6.0345 -1.6850 -1.7406 41 1 5.4605 -2.3476 -4.4251 42 1 7.3647 -3.6492 -6.8350 43 1 2.2491 -1.6318 1.1526 44 1 2.8739 -2.6061 2.5619 45 1 3.6993 -3.7743 4.5354 46 1 4.2288 1.6020 7.6449 47 1 2.4972 1.5258 7.2400 48 1 3.0697 0.9297 8.8165 49 1 2.5375 1.0358 4.8056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176368457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:33 Heat of formation + Delta-G solvation = 75.207803 kcal Electronic energy + Delta-G solvation = -28737.878406 eV Core-core repulsion = 24701.897111 eV Total energy + Delta-G solvation = -4035.981295 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.63679 -40.45539 -38.07411 -36.95151 -35.37938 -35.27253 -33.36900 -32.07884 -31.31343 -30.80009 -30.07327 -28.41036 -27.47191 -25.28993 -24.17275 -23.98696 -22.29866 -21.63023 -21.33962 -20.88188 -20.67458 -18.83526 -18.18108 -17.19663 -17.08999 -16.90681 -16.58967 -15.57318 -15.30364 -14.91130 -14.77223 -14.71552 -14.44189 -14.10088 -13.98073 -13.79019 -13.57474 -13.44917 -13.16102 -13.01400 -12.96825 -12.58432 -12.46384 -12.39508 -12.18374 -11.79376 -11.49933 -11.29590 -11.27374 -11.16991 -11.01992 -10.80791 -10.72646 -10.43759 -10.33932 -10.27224 -9.98966 -9.66939 -9.52240 -9.31197 -8.85151 -8.84015 -6.89656 -5.74845 -3.03163 -0.14073 0.68200 1.64497 1.66300 2.52748 2.77379 3.29913 3.44744 3.45443 3.49673 3.51558 3.91556 4.12864 4.22063 4.41584 4.46752 4.50287 4.51943 4.63510 4.70359 4.78844 4.83767 4.87671 4.94593 5.21961 5.34017 5.37258 5.41285 5.48824 5.53937 5.58847 5.63992 5.67702 5.72201 5.76003 5.85843 5.92263 5.95482 6.05634 6.07261 6.17251 6.29282 6.32518 6.38110 6.45914 6.89614 6.93449 7.17400 7.71675 7.83920 7.86402 8.44599 9.55350 10.14538 10.49060 11.48208 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.001928 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.923347 B =14517.479630 C =16350.010057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.713 5.713 18 C 0.563 3.437 19 O -0.537 6.537 20 C -0.103 4.103 21 C -0.090 4.090 22 C -0.051 4.051 23 C 0.029 3.971 24 N -0.256 5.256 25 N -0.014 5.014 26 N -0.315 5.315 27 C 0.085 3.915 28 C 0.012 3.988 29 C -0.032 4.032 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.402 0.598 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.508 7.214 25.948 31.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.365 5.365 18 C 0.350 3.650 19 O -0.414 6.414 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.074 4.074 23 C -0.097 4.097 24 N -0.130 5.130 25 N 0.005 4.995 26 N -0.115 5.115 27 C -0.056 4.056 28 C -0.107 4.107 29 C -0.054 4.054 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.238 0.762 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.112 0.888 47 H 0.119 0.881 48 H 0.123 0.877 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.048 7.626 27.363 32.626 hybrid contribution 0.631 -0.115 -1.330 1.477 sum -15.417 7.511 26.033 31.174 Atomic orbital electron populations 1.22180 0.95174 1.02226 1.02583 1.21109 0.93867 0.97803 0.83540 0.89083 1.21956 0.96933 1.01013 0.96662 1.21532 0.93892 1.01182 0.98704 1.21727 0.97262 1.00284 0.97076 1.20650 0.91007 0.95325 0.90572 1.42386 1.05325 1.64963 1.25209 1.19252 0.83934 1.28368 1.05411 0.91245 1.24751 0.97732 1.01017 0.97709 1.69662 1.32743 1.40799 1.15142 0.86179 0.85116 0.77679 0.77178 1.21713 1.21762 1.20782 1.46021 1.66711 1.14204 1.09579 1.17992 0.77709 0.86371 0.82959 1.90786 1.50387 1.15375 1.84900 1.19750 1.03381 0.94274 0.93633 1.20899 0.98230 0.93090 0.98964 1.19966 0.98224 1.00692 0.88479 1.20116 1.03124 0.91745 0.94687 1.75397 1.19133 1.18134 1.00336 1.78025 1.10560 0.89443 1.21479 1.47165 1.46598 1.11239 1.06514 1.22315 1.04587 0.77244 1.01440 1.19615 1.07544 0.96113 0.87435 1.20042 0.96704 1.00365 0.88339 0.91361 0.92365 0.92247 0.91219 0.90026 0.91941 0.92098 0.92086 0.92044 0.96601 0.96613 0.78349 0.93556 0.76233 0.84020 0.83518 0.88846 0.88143 0.87651 0.83671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.49 37.16 0.35 -0.91 16 2 C 0.14 1.21 2.58 -67.93 -0.17 1.04 16 3 H 0.09 0.95 7.57 -51.93 -0.39 0.55 16 4 C -0.13 -1.12 4.75 -26.73 -0.13 -1.24 16 5 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 6 C -0.13 -1.91 5.33 -26.73 -0.14 -2.06 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 8 N -0.73 -19.02 5.60 -59.91 -0.34 -19.35 16 9 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 13 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 N -0.71 -5.75 4.48 -54.79 -0.25 -6.00 16 18 C 0.56 5.58 7.73 -12.39 -0.10 5.48 16 19 O -0.54 -6.99 15.98 5.30 0.08 -6.90 16 20 C -0.10 -0.88 5.88 -104.92 -0.62 -1.50 16 21 C -0.09 -0.63 9.46 -39.57 -0.37 -1.00 16 22 C -0.05 -0.41 10.03 -39.70 -0.40 -0.81 16 23 C 0.03 0.31 7.36 -84.95 -0.63 -0.32 16 24 N -0.26 -3.07 12.42 32.09 0.40 -2.67 16 25 N -0.01 -0.15 13.07 60.35 0.79 0.64 16 26 N -0.31 -2.59 3.80 -65.54 -0.25 -2.84 16 27 C 0.08 0.26 11.40 59.85 0.68 0.94 16 28 C 0.01 0.11 6.93 -84.23 -0.58 -0.48 16 29 C -0.03 -0.27 9.59 -39.09 -0.38 -0.65 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.40 2.39 6.60 -40.82 -0.27 2.12 16 44 H 0.14 0.61 6.36 -52.49 -0.33 0.27 16 45 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 46 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 47 H 0.10 0.14 8.14 -51.93 -0.42 -0.29 16 48 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 49 H 0.15 1.08 7.63 -52.49 -0.40 0.68 16 LS Contribution 410.30 15.07 6.18 6.18 Total: -1.00 -36.61 410.30 -8.14 -44.75 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.58 Total: 3.84 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.89 Total: -7.45 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: 1.08 Total: -58.06 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.08 Total: -6.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.61 -8.14 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176368457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.955 kcal (2) G-P(sol) polarization free energy of solvation -36.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds