Wall clock time and date at job start Wed Apr 1 2020 04:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 5 5 C 1.52997 * 109.47080 * 174.99701 * 4 2 1 6 6 C 1.53003 * 109.47411 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47411 * 179.97438 * 6 5 4 8 8 N 1.46505 * 109.46938 * 179.97438 * 7 6 5 9 9 C 1.36935 * 119.99721 * 180.02562 * 8 7 6 10 10 H 1.08007 * 120.00287 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00196 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99660 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46757 * 89.99429 * 13 11 9 15 15 H 1.48497 * 109.47059 * 209.99496 * 13 11 9 16 16 H 1.48499 * 109.46945 * 329.99854 * 13 11 9 17 17 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 18 18 C 1.34777 * 119.99828 * 274.72131 * 17 2 1 19 19 O 1.21573 * 119.99937 * 0.28077 * 18 17 2 20 20 C 1.47717 * 119.99958 * 180.27848 * 18 17 2 21 21 C 1.40251 * 119.88522 * 0.02562 * 20 18 17 22 22 C 1.36161 * 120.56319 * 179.97438 * 21 20 18 23 23 C 1.39911 * 119.97599 * 0.02562 * 22 21 20 24 24 N 1.34742 * 134.59378 * 179.97438 * 23 22 21 25 25 N 1.28645 * 109.29639 * 180.02562 * 24 23 22 26 26 N 1.28816 * 111.78916 * 0.02562 * 25 24 23 27 27 C 1.46499 * 125.94580 * 179.97438 * 26 25 24 28 28 C 1.37374 * 108.11272 * 0.02562 * 26 25 24 29 29 C 1.38619 * 134.88375 * 180.32211 * 28 26 25 30 30 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 31 31 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 33 33 H 1.08997 * 109.47492 * 295.00122 * 4 2 1 34 34 H 1.09007 * 109.47243 * 54.99904 * 4 2 1 35 35 H 1.09002 * 109.47641 * 299.99883 * 5 4 2 36 36 H 1.08998 * 109.46968 * 60.00255 * 5 4 2 37 37 H 1.09002 * 109.46933 * 300.00830 * 6 5 4 38 38 H 1.09007 * 109.47158 * 60.00052 * 6 5 4 39 39 H 1.08997 * 109.47193 * 299.99893 * 7 6 5 40 40 H 1.08998 * 109.46968 * 60.00156 * 7 6 5 41 41 H 0.96995 * 119.99983 * 0.02562 * 8 7 6 42 42 H 0.97003 * 120.00102 * 180.02562 * 12 11 9 43 43 H 0.97001 * 120.00384 * 95.00578 * 17 2 1 44 44 H 1.08002 * 119.71550 * 359.97349 * 21 20 18 45 45 H 1.08002 * 120.01311 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.46806 * 90.02143 * 27 26 25 47 47 H 1.08997 * 109.47210 * 210.02786 * 27 26 25 48 48 H 1.09005 * 109.46694 * 330.02776 * 27 26 25 49 49 H 1.07997 * 120.24851 * 359.93200 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5632 7 6 5.5995 -1.2254 -2.6281 8 7 6.0878 -1.9161 -3.8243 9 6 7.4299 -1.9524 -4.0939 10 1 8.1284 -1.4715 -3.4250 11 6 7.8926 -2.6063 -5.2276 12 7 7.0414 -3.1919 -6.0430 13 14 9.7233 -2.6552 -5.5959 14 1 10.3239 -3.8559 -4.9611 15 1 9.9311 -2.7157 -7.0650 16 1 10.3699 -1.4331 -5.0543 17 7 2.0183 -0.6906 1.1962 18 6 2.1523 -0.0169 2.3557 19 8 1.8631 1.1627 2.4103 20 6 2.6505 -0.7117 3.5603 21 6 2.9839 -2.0725 3.4945 22 6 3.4448 -2.7265 4.5962 23 6 3.5888 -2.0405 5.8071 24 7 4.0038 -2.3802 7.0432 25 7 3.9409 -1.3498 7.8108 26 7 3.5062 -0.3120 7.1836 27 6 3.3131 1.0218 7.7580 28 6 3.2542 -0.6739 5.8825 29 6 2.7901 -0.0131 4.7558 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -1.7715 -1.2056 34 1 1.6053 -0.2618 -2.1370 35 1 3.8532 0.4370 -1.3574 36 1 3.9994 -1.0727 -0.4260 37 1 3.7863 -2.3843 -2.5200 38 1 3.6401 -0.8741 -3.4508 39 1 5.8875 -0.1751 -2.6715 40 1 6.0345 -1.6850 -1.7406 41 1 5.4605 -2.3476 -4.4251 42 1 7.3647 -3.6492 -6.8350 43 1 2.2491 -1.6318 1.1526 44 1 2.8739 -2.6061 2.5619 45 1 3.6993 -3.7743 4.5354 46 1 4.2288 1.6020 7.6449 47 1 2.4972 1.5258 7.2400 48 1 3.0697 0.9297 8.8165 49 1 2.5375 1.0358 4.8056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176368457.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:32 Heat of formation + Delta-G solvation = 50.416725 kcal Electronic energy + Delta-G solvation = -28738.953428 eV Core-core repulsion = 24701.897111 eV Total energy + Delta-G solvation = -4037.056317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.30603 -41.19523 -38.74797 -37.89809 -36.81409 -35.94243 -34.79166 -33.21752 -32.15191 -31.90505 -30.97947 -28.86853 -28.77750 -26.12886 -25.68057 -24.65631 -23.67444 -22.27433 -22.20271 -21.95818 -21.58816 -19.52069 -19.10830 -18.76732 -17.82228 -17.67514 -17.29417 -16.67445 -16.38575 -16.15254 -15.78612 -15.45754 -15.32516 -15.25834 -15.09889 -14.58866 -14.46473 -14.31247 -14.15173 -14.02911 -13.81105 -13.29234 -13.26305 -13.07188 -12.99904 -12.85986 -12.83626 -12.79193 -12.41643 -12.23844 -12.15052 -11.86858 -11.85899 -11.84144 -11.76706 -11.45349 -11.35865 -11.08114 -10.92564 -10.24765 -10.00804 -9.46391 -8.99826 -7.95771 -5.24580 -0.81153 0.06600 0.95190 1.14152 1.47164 1.49023 1.57541 1.80178 2.09991 2.55943 2.63535 2.83564 3.37533 3.42903 3.53688 3.58176 3.66887 3.90590 3.94350 4.06184 4.10094 4.16488 4.22586 4.24842 4.39730 4.41985 4.46407 4.54953 4.64667 4.69770 4.77596 4.82423 4.85275 4.92189 4.98088 5.03432 5.06238 5.08002 5.12742 5.17134 5.32081 5.37815 5.38763 5.45903 5.47707 5.49615 5.57531 5.61358 6.27426 6.51800 7.12760 7.16668 7.33136 8.10564 8.33574 9.27712 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010640 B = 0.001928 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.923347 B =14517.479630 C =16350.010057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.072 0.928 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.249 4.249 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.285 1.285 15 H -0.293 1.293 16 H -0.271 1.271 17 N -0.703 5.703 18 C 0.564 3.436 19 O -0.573 6.573 20 C -0.110 4.110 21 C -0.078 4.078 22 C -0.059 4.059 23 C 0.010 3.990 24 N -0.292 5.292 25 N -0.032 5.032 26 N -0.305 5.305 27 C 0.070 3.930 28 C 0.001 3.999 29 C -0.031 4.031 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.011 0.989 40 H 0.018 0.982 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.414 0.586 44 H 0.172 0.828 45 H 0.164 0.836 46 H 0.108 0.892 47 H 0.119 0.881 48 H 0.121 0.879 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.922 7.344 26.211 32.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.381 4.381 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.212 1.212 15 H -0.220 1.220 16 H -0.196 1.196 17 N -0.355 5.355 18 C 0.351 3.649 19 O -0.453 6.453 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.081 4.081 23 C -0.117 4.117 24 N -0.165 5.165 25 N -0.013 5.013 26 N -0.106 5.106 27 C -0.068 4.068 28 C -0.118 4.118 29 C -0.053 4.053 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.252 0.748 44 H 0.189 0.811 45 H 0.182 0.818 46 H 0.126 0.874 47 H 0.138 0.862 48 H 0.140 0.860 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.463 7.759 27.672 33.121 hybrid contribution 0.731 -0.064 -1.372 1.556 sum -15.732 7.695 26.300 31.598 Atomic orbital electron populations 1.22126 0.94183 1.03004 1.02320 1.21021 0.94546 0.96872 0.83536 0.90959 1.21861 0.94618 1.02187 0.96868 1.21445 0.95889 1.00186 0.96935 1.21605 0.93552 1.01066 0.98820 1.20876 0.94439 0.94185 0.88435 1.42631 1.04461 1.65367 1.26698 1.19647 0.85405 1.27669 1.05352 0.90940 1.25597 1.02175 1.01307 0.97854 1.69811 1.34605 1.41915 1.15572 0.85127 0.79949 0.78000 0.76612 1.21204 1.21984 1.19606 1.45959 1.65891 1.14737 1.08933 1.18149 0.77207 0.85948 0.83558 1.90771 1.52132 1.16944 1.85471 1.19770 1.03866 0.94987 0.93124 1.21158 0.96649 0.92359 0.99766 1.20237 0.98371 1.01598 0.87912 1.20555 1.03467 0.92696 0.94996 1.75326 1.20790 1.19128 1.01290 1.77925 1.11406 0.90073 1.21906 1.47570 1.44851 1.12010 1.06195 1.22789 1.06155 0.75298 1.02564 1.19742 1.08050 0.95981 0.88034 1.20139 0.96310 1.00732 0.88163 0.90529 0.91025 0.93659 0.89486 0.89481 0.92645 0.91332 0.91700 0.92516 0.97053 0.96356 0.79387 0.93927 0.74757 0.81073 0.81835 0.87357 0.86227 0.86033 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.49 71.98 0.68 -1.42 16 2 C 0.14 2.18 2.58 44.99 0.12 2.30 16 3 H 0.07 1.42 7.57 -2.39 -0.02 1.40 16 4 C -0.12 -1.72 4.75 30.59 0.15 -1.57 16 5 C -0.11 -2.20 5.10 30.59 0.16 -2.04 16 6 C -0.11 -3.24 5.33 30.59 0.16 -3.08 16 7 C 0.15 5.82 6.26 86.38 0.54 6.36 16 8 N -0.75 -38.64 5.60 -343.45 -1.92 -40.56 16 9 C -0.25 -14.18 9.99 84.03 0.84 -13.34 16 10 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 11 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 13 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 14 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 15 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 N -0.70 -9.71 4.48 -445.53 -2.00 -11.71 16 18 C 0.56 10.37 7.73 86.75 0.67 11.04 16 19 O -0.57 -14.55 15.98 -3.95 -0.06 -14.62 16 20 C -0.11 -1.73 5.88 -20.06 -0.12 -1.85 16 21 C -0.08 -0.93 9.46 22.28 0.21 -0.72 16 22 C -0.06 -0.88 10.03 22.19 0.22 -0.65 16 23 C 0.01 0.20 7.36 39.75 0.29 0.49 16 24 N -0.29 -7.14 12.42 -52.39 -0.65 -7.79 16 25 N -0.03 -0.70 13.07 37.02 0.48 -0.22 16 26 N -0.30 -4.88 3.80 -361.27 -1.37 -6.26 16 27 C 0.07 0.35 11.40 127.77 1.46 1.81 16 28 C 0.00 0.02 6.93 39.02 0.27 0.29 16 29 C -0.03 -0.50 9.59 22.58 0.22 -0.28 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.37 20.28 7.67 -92.71 -0.71 19.57 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.41 3.56 6.60 -92.71 -0.61 2.95 16 44 H 0.17 0.89 6.36 -2.91 -0.02 0.87 16 45 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 46 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 48 H 0.12 0.21 8.14 -2.38 -0.02 0.19 16 49 H 0.15 2.16 7.63 -2.91 -0.02 2.13 16 Total: -1.00 -79.70 410.30 2.77 -76.93 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.35 Total: 21.64 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 6.33 Total: -6.67 kcal Atomic # 7 Polarization: -120.55 SS G_CDS: -5.18 Total: -125.73 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.06 Total: -14.62 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -79.70 2.77 -76.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176368457.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.349 kcal (2) G-P(sol) polarization free energy of solvation -79.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds