Wall clock time and date at job start Wed Apr 1 2020 04:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.53009 * 109.47020 * 185.00095 * 4 2 1 6 6 C 1.52989 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47113 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99781 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00176 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99801 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46942 * 90.00342 * 13 11 9 15 15 H 1.48499 * 109.46796 * 210.00268 * 13 11 9 16 16 H 1.48497 * 109.47112 * 329.99903 * 13 11 9 17 17 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 18 18 C 1.34781 * 119.99920 * 84.99933 * 17 2 1 19 19 O 1.21566 * 119.99841 * 0.02562 * 18 17 2 20 20 C 1.47720 * 119.99718 * 180.02562 * 18 17 2 21 21 C 1.40252 * 119.88197 * 359.97438 * 20 18 17 22 22 C 1.36173 * 120.55523 * 179.97438 * 21 20 18 23 23 C 1.39911 * 119.97691 * 359.97438 * 22 21 20 24 24 N 1.34748 * 134.59079 * 179.97438 * 23 22 21 25 25 N 1.28646 * 109.28970 * 180.02562 * 24 23 22 26 26 N 1.28815 * 111.79356 * 359.97438 * 25 24 23 27 27 C 1.46498 * 125.94175 * 180.02562 * 26 25 24 28 28 C 1.37366 * 108.11267 * 0.02562 * 26 25 24 29 29 C 1.38620 * 134.88597 * 180.28494 * 28 26 25 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 4 2 36 36 H 1.08999 * 109.47112 * 60.00003 * 5 4 2 37 37 H 1.09001 * 109.47240 * 299.99479 * 6 5 4 38 38 H 1.08999 * 109.47464 * 59.99808 * 6 5 4 39 39 H 1.09001 * 109.46642 * 299.99845 * 7 6 5 40 40 H 1.08997 * 109.46604 * 59.99609 * 7 6 5 41 41 H 0.96997 * 120.00390 * 0.02562 * 8 7 6 42 42 H 0.97001 * 119.99587 * 179.97438 * 12 11 9 43 43 H 0.96998 * 120.00176 * 265.00572 * 17 2 1 44 44 H 1.07995 * 119.72174 * 0.02562 * 21 20 18 45 45 H 1.08003 * 120.00526 * 180.02562 * 22 21 20 46 46 H 1.09008 * 109.46876 * 90.02791 * 27 26 25 47 47 H 1.09000 * 109.46982 * 210.02494 * 27 26 25 48 48 H 1.08993 * 109.47290 * 330.02940 * 27 26 25 49 49 H 1.08004 * 120.24780 * 359.93390 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0748 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6276 8 7 6.0878 -1.9170 3.8238 9 6 7.4299 -1.9534 4.0936 10 1 8.1283 -1.4726 3.4247 11 6 7.8925 -2.6072 5.2273 12 7 7.0413 -3.1927 6.0428 13 14 9.7232 -2.6562 5.5956 14 1 10.0927 -1.4814 6.4254 15 1 10.0466 -3.9042 6.3325 16 1 10.4855 -2.6219 4.3217 17 7 2.0184 -0.6906 -1.1961 18 6 2.1472 -0.0182 -2.3571 19 8 1.8584 1.1614 -2.4116 20 6 2.6391 -0.7148 -3.5633 21 6 2.9720 -2.0756 -3.4974 22 6 3.4262 -2.7314 -4.6010 23 6 3.5636 -2.0472 -5.8136 24 7 3.9721 -2.3886 -7.0515 25 7 3.9059 -1.3590 -7.8199 26 7 3.4751 -0.3202 -7.1917 27 6 3.2800 1.0130 -7.7667 28 6 3.2306 -0.6801 -5.8887 29 6 2.7635 -0.0201 -4.7627 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8532 0.4370 1.3575 37 1 3.6402 -0.8757 3.4507 38 1 3.7864 -2.3852 2.5187 39 1 6.0345 -1.6854 1.7397 40 1 5.8875 -0.1761 2.6718 41 1 5.4606 -2.3491 4.4244 42 1 7.3646 -3.6499 6.8348 43 1 2.2491 -1.6317 -1.1525 44 1 2.8663 -2.6081 -2.5638 45 1 3.6796 -3.7795 -4.5403 46 1 2.2662 1.0947 -8.1588 47 1 3.4330 1.7675 -6.9950 48 1 3.9954 1.1687 -8.5740 49 1 2.5025 1.0266 -4.8148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176368458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:37 Heat of formation + Delta-G solvation = 75.203109 kcal Electronic energy + Delta-G solvation = -28734.532747 eV Core-core repulsion = 24698.551248 eV Total energy + Delta-G solvation = -4035.981499 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.63759 -40.45634 -38.07416 -36.95209 -35.37979 -35.27293 -33.36927 -32.07854 -31.31344 -30.80032 -30.07297 -28.41093 -27.47161 -25.29041 -24.17338 -23.98762 -22.29880 -21.63085 -21.33978 -20.88137 -20.67447 -18.83572 -18.18158 -17.19905 -17.08911 -16.90686 -16.58979 -15.57497 -15.30387 -14.90988 -14.77495 -14.71402 -14.44180 -14.09888 -13.98645 -13.78974 -13.57182 -13.45048 -13.16154 -13.01346 -12.96763 -12.58529 -12.46236 -12.39778 -12.18381 -11.79333 -11.50065 -11.29806 -11.27340 -11.17109 -11.01679 -10.81316 -10.72493 -10.43524 -10.34200 -10.27041 -9.98985 -9.66943 -9.52279 -9.31172 -8.85160 -8.84088 -6.89664 -5.74889 -3.03185 -0.14126 0.68119 1.64491 1.66200 2.52712 2.77361 3.29858 3.44740 3.45440 3.49662 3.51514 3.91884 4.12830 4.22046 4.41036 4.46757 4.50164 4.51901 4.63475 4.70237 4.78809 4.83844 4.87654 4.94612 5.22004 5.33950 5.37205 5.41292 5.48771 5.53924 5.58864 5.63957 5.67699 5.72121 5.76049 5.85845 5.92260 5.95430 6.05585 6.07260 6.17285 6.29279 6.32543 6.38148 6.45941 6.89624 6.93459 7.17397 7.71697 7.83851 7.86392 8.44603 9.55338 10.14547 10.49022 11.48175 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.001924 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.522691 B =14551.805425 C =16374.696977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.291 1.291 16 H -0.282 1.282 17 N -0.713 5.713 18 C 0.563 3.437 19 O -0.537 6.537 20 C -0.103 4.103 21 C -0.090 4.090 22 C -0.051 4.051 23 C 0.029 3.971 24 N -0.256 5.256 25 N -0.014 5.014 26 N -0.315 5.315 27 C 0.085 3.915 28 C 0.012 3.988 29 C -0.032 4.032 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.402 0.598 44 H 0.142 0.858 45 H 0.147 0.853 46 H 0.092 0.908 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.463 7.189 -25.959 31.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.166 4.166 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.365 5.365 18 C 0.350 3.650 19 O -0.414 6.414 20 C -0.110 4.110 21 C -0.112 4.112 22 C -0.074 4.074 23 C -0.097 4.097 24 N -0.130 5.130 25 N 0.005 4.995 26 N -0.115 5.115 27 C -0.056 4.056 28 C -0.107 4.107 29 C -0.055 4.055 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.238 0.762 44 H 0.160 0.840 45 H 0.165 0.835 46 H 0.111 0.889 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.007 7.584 -27.386 32.615 hybrid contribution 0.611 -0.101 1.337 1.474 sum -15.396 7.483 -26.048 31.170 Atomic orbital electron populations 1.22183 0.95181 1.02225 1.02588 1.21108 0.93857 0.97805 0.83547 0.89085 1.21956 0.96937 1.01010 0.96656 1.21532 0.93888 1.01174 0.98710 1.21726 0.97264 1.00277 0.97084 1.20651 0.91005 0.95322 0.90571 1.42385 1.05337 1.64951 1.25211 1.19253 0.83939 1.28350 1.05426 0.91244 1.24753 0.97735 1.00991 0.97727 1.69662 1.32760 1.40803 1.15117 0.86179 0.85091 0.77020 0.77864 1.21732 1.21755 1.20769 1.46020 1.66750 1.14255 1.09494 1.17992 0.77682 0.86386 0.82971 1.90784 1.50306 1.15369 1.84982 1.19751 1.03428 0.94308 0.93544 1.20902 0.98255 0.93063 0.98968 1.19969 0.98238 1.00703 0.88449 1.20117 1.03190 0.91714 0.94660 1.75402 1.19118 1.18204 1.00271 1.78024 1.10605 0.89438 1.21445 1.47162 1.46740 1.11247 1.06364 1.22315 1.04840 0.77216 1.01213 1.19613 1.07547 0.96169 0.87367 1.20042 0.96704 1.00392 0.88324 0.92365 0.91358 0.92246 0.90026 0.91220 0.92098 0.91937 0.92046 0.92085 0.96610 0.96608 0.78349 0.93555 0.76234 0.84018 0.83518 0.88920 0.88105 0.87621 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.27 9.48 37.16 0.35 -0.91 16 2 C 0.14 1.21 2.57 -67.93 -0.17 1.04 16 3 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 4 C -0.13 -1.12 4.75 -26.73 -0.13 -1.24 16 5 C -0.11 -1.32 5.10 -26.73 -0.14 -1.45 16 6 C -0.13 -1.91 5.33 -26.73 -0.14 -2.06 16 7 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 8 N -0.73 -19.02 5.60 -59.91 -0.34 -19.35 16 9 C -0.24 -6.82 9.99 -15.06 -0.15 -6.98 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 11 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 12 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 13 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 14 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 N -0.71 -5.75 4.48 -54.79 -0.25 -6.00 16 18 C 0.56 5.58 7.73 -12.38 -0.10 5.48 16 19 O -0.54 -6.98 15.98 5.31 0.08 -6.90 16 20 C -0.10 -0.88 5.88 -104.92 -0.62 -1.50 16 21 C -0.09 -0.63 9.46 -39.57 -0.37 -1.00 16 22 C -0.05 -0.41 10.03 -39.70 -0.40 -0.81 16 23 C 0.03 0.30 7.36 -84.95 -0.63 -0.32 16 24 N -0.26 -3.06 12.42 32.09 0.40 -2.66 16 25 N -0.01 -0.15 13.07 60.35 0.79 0.64 16 26 N -0.31 -2.59 3.80 -65.54 -0.25 -2.84 16 27 C 0.08 0.26 11.40 59.85 0.68 0.94 16 28 C 0.01 0.11 6.93 -84.24 -0.58 -0.48 16 29 C -0.03 -0.27 9.59 -39.10 -0.38 -0.65 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.67 7.75 -51.93 -0.40 0.27 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.32 7.67 -40.82 -0.31 10.01 16 42 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.40 2.39 6.60 -40.82 -0.27 2.12 16 44 H 0.14 0.61 6.36 -52.49 -0.33 0.27 16 45 H 0.15 0.89 8.06 -52.48 -0.42 0.46 16 46 H 0.09 0.14 8.14 -51.92 -0.42 -0.28 16 47 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 48 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 49 H 0.15 1.08 7.63 -52.48 -0.40 0.68 16 LS Contribution 410.30 15.07 6.18 6.18 Total: -1.00 -36.60 410.30 -8.14 -44.74 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -7.58 Total: 3.83 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -2.89 Total: -7.45 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 1.08 Total: -58.05 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: 0.08 Total: -6.90 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.60 -8.14 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176368458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.944 kcal (2) G-P(sol) polarization free energy of solvation -36.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds