Wall clock time and date at job start Wed Apr 1 2020 04:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52999 * 109.46626 * 119.99699 * 2 1 3 5 5 C 1.53009 * 109.47020 * 185.00095 * 4 2 1 6 6 C 1.52989 * 109.47113 * 180.02562 * 5 4 2 7 7 C 1.53009 * 109.47113 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47006 * 179.97438 * 7 6 5 9 9 C 1.36938 * 119.99781 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00176 * 179.97438 * 9 8 7 12 12 N 1.31618 * 119.99801 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99889 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.46942 * 90.00342 * 13 11 9 15 15 H 1.48499 * 109.46796 * 210.00268 * 13 11 9 16 16 H 1.48497 * 109.47112 * 329.99903 * 13 11 9 17 17 N 1.46492 * 109.47363 * 239.99860 * 2 1 3 18 18 C 1.34781 * 119.99920 * 84.99933 * 17 2 1 19 19 O 1.21566 * 119.99841 * 0.02562 * 18 17 2 20 20 C 1.47720 * 119.99718 * 180.02562 * 18 17 2 21 21 C 1.40252 * 119.88197 * 359.97438 * 20 18 17 22 22 C 1.36173 * 120.55523 * 179.97438 * 21 20 18 23 23 C 1.39911 * 119.97691 * 359.97438 * 22 21 20 24 24 N 1.34748 * 134.59079 * 179.97438 * 23 22 21 25 25 N 1.28646 * 109.28970 * 180.02562 * 24 23 22 26 26 N 1.28815 * 111.79356 * 359.97438 * 25 24 23 27 27 C 1.46498 * 125.94175 * 180.02562 * 26 25 24 28 28 C 1.37366 * 108.11267 * 0.02562 * 26 25 24 29 29 C 1.38620 * 134.88597 * 180.28494 * 28 26 25 30 30 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 32 32 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 1.09005 * 109.47260 * 65.00844 * 4 2 1 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 4 2 36 36 H 1.08999 * 109.47112 * 60.00003 * 5 4 2 37 37 H 1.09001 * 109.47240 * 299.99479 * 6 5 4 38 38 H 1.08999 * 109.47464 * 59.99808 * 6 5 4 39 39 H 1.09001 * 109.46642 * 299.99845 * 7 6 5 40 40 H 1.08997 * 109.46604 * 59.99609 * 7 6 5 41 41 H 0.96997 * 120.00390 * 0.02562 * 8 7 6 42 42 H 0.97001 * 119.99587 * 179.97438 * 12 11 9 43 43 H 0.96998 * 120.00176 * 265.00572 * 17 2 1 44 44 H 1.07995 * 119.72174 * 0.02562 * 21 20 18 45 45 H 1.08003 * 120.00526 * 180.02562 * 22 21 20 46 46 H 1.09008 * 109.46876 * 90.02791 * 27 26 25 47 47 H 1.09000 * 109.46982 * 210.02494 * 27 26 25 48 48 H 1.08993 * 109.47290 * 330.02940 * 27 26 25 49 49 H 1.08004 * 120.24780 * 359.93390 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3139 6 6 4.0748 -1.3350 2.5627 7 6 5.5996 -1.2265 2.6276 8 7 6.0878 -1.9170 3.8238 9 6 7.4299 -1.9534 4.0936 10 1 8.1283 -1.4726 3.4247 11 6 7.8925 -2.6072 5.2273 12 7 7.0413 -3.1927 6.0428 13 14 9.7232 -2.6562 5.5956 14 1 10.0927 -1.4814 6.4254 15 1 10.0466 -3.9042 6.3325 16 1 10.4855 -2.6219 4.3217 17 7 2.0184 -0.6906 -1.1961 18 6 2.1472 -0.0182 -2.3571 19 8 1.8584 1.1614 -2.4116 20 6 2.6391 -0.7148 -3.5633 21 6 2.9720 -2.0756 -3.4974 22 6 3.4262 -2.7314 -4.6010 23 6 3.5636 -2.0472 -5.8136 24 7 3.9721 -2.3886 -7.0515 25 7 3.9059 -1.3590 -7.8199 26 7 3.4751 -0.3202 -7.1917 27 6 3.2800 1.0130 -7.7667 28 6 3.2306 -0.6801 -5.8887 29 6 2.7635 -0.0201 -4.7627 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6053 -0.2617 2.1370 34 1 1.7517 -1.7715 1.2056 35 1 3.9994 -1.0728 0.4261 36 1 3.8532 0.4370 1.3575 37 1 3.6402 -0.8757 3.4507 38 1 3.7864 -2.3852 2.5187 39 1 6.0345 -1.6854 1.7397 40 1 5.8875 -0.1761 2.6718 41 1 5.4606 -2.3491 4.4244 42 1 7.3646 -3.6499 6.8348 43 1 2.2491 -1.6317 -1.1525 44 1 2.8663 -2.6081 -2.5638 45 1 3.6796 -3.7795 -4.5403 46 1 2.2662 1.0947 -8.1588 47 1 3.4330 1.7675 -6.9950 48 1 3.9954 1.1687 -8.5740 49 1 2.5025 1.0266 -4.8148 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176368458.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:36 Heat of formation + Delta-G solvation = 50.418846 kcal Electronic energy + Delta-G solvation = -28735.607473 eV Core-core repulsion = 24698.551248 eV Total energy + Delta-G solvation = -4037.056225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.30612 -41.19591 -38.74749 -37.89829 -36.81405 -35.94231 -34.79165 -33.21713 -32.15164 -31.90435 -30.97901 -28.86839 -28.77684 -26.12933 -25.68034 -24.65653 -23.67424 -22.27429 -22.20261 -21.95779 -21.58752 -19.52072 -19.10809 -18.76725 -17.82318 -17.67380 -17.29416 -16.67420 -16.38541 -16.15430 -15.78584 -15.45689 -15.32529 -15.25768 -15.09792 -14.58751 -14.46585 -14.31220 -14.15185 -14.02696 -13.81394 -13.29604 -13.25964 -13.07023 -13.00052 -12.87678 -12.81925 -12.79206 -12.41756 -12.24690 -12.14239 -11.86456 -11.85950 -11.84303 -11.76544 -11.45496 -11.35678 -11.08139 -10.92610 -10.24743 -10.00757 -9.46358 -8.99802 -7.95773 -5.24562 -0.81126 0.06585 0.95226 1.14163 1.47169 1.49001 1.57577 1.80195 2.09993 2.55947 2.63531 2.83600 3.37548 3.42853 3.53668 3.58188 3.66931 3.90595 3.94326 4.06151 4.10133 4.16561 4.22762 4.24841 4.39714 4.41953 4.46352 4.54987 4.64712 4.69806 4.77596 4.82408 4.85267 4.92213 4.98117 5.03453 5.06264 5.08020 5.12726 5.17171 5.32085 5.37782 5.38766 5.45938 5.47776 5.49644 5.57607 5.61378 6.27472 6.51818 7.12769 7.16686 7.33160 8.10615 8.33566 9.27723 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010682 B = 0.001924 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.522691 B =14551.805425 C =16374.696977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.072 0.928 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.249 4.249 10 H 0.073 0.927 11 C -0.077 4.077 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.287 1.287 15 H -0.293 1.293 16 H -0.270 1.270 17 N -0.703 5.703 18 C 0.564 3.436 19 O -0.573 6.573 20 C -0.110 4.110 21 C -0.078 4.078 22 C -0.059 4.059 23 C 0.010 3.990 24 N -0.292 5.292 25 N -0.032 5.032 26 N -0.305 5.305 27 C 0.070 3.930 28 C 0.001 3.999 29 C -0.031 4.031 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.018 0.982 40 H 0.012 0.988 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.414 0.586 44 H 0.172 0.828 45 H 0.164 0.836 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 7.312 -26.233 32.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.145 4.145 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.381 4.381 10 H 0.091 0.909 11 C -0.269 4.269 12 N -0.619 5.619 13 Si 0.803 3.197 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.195 1.195 17 N -0.355 5.355 18 C 0.351 3.649 19 O -0.453 6.453 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.081 4.081 23 C -0.117 4.117 24 N -0.165 5.165 25 N -0.013 5.013 26 N -0.106 5.106 27 C -0.068 4.068 28 C -0.118 4.118 29 C -0.053 4.053 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.030 0.970 41 H 0.206 0.794 42 H 0.061 0.939 43 H 0.252 0.748 44 H 0.189 0.811 45 H 0.182 0.818 46 H 0.130 0.870 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -16.419 7.712 -27.706 33.116 hybrid contribution 0.705 -0.046 1.383 1.553 sum -15.713 7.666 -26.323 31.600 Atomic orbital electron populations 1.22129 0.94195 1.03001 1.02321 1.21020 0.94532 0.96877 0.83544 0.90957 1.21861 0.94624 1.02183 0.96860 1.21445 0.95884 1.00183 0.96942 1.21604 0.93554 1.01062 0.98823 1.20877 0.94437 0.94187 0.88430 1.42631 1.04474 1.65354 1.26701 1.19649 0.85410 1.27641 1.05369 0.90935 1.25598 1.02177 1.01283 0.97875 1.69811 1.34620 1.41920 1.15552 0.85127 0.79972 0.76707 0.77887 1.21367 1.21922 1.19506 1.45958 1.65931 1.14789 1.08848 1.18149 0.77176 0.85962 0.83572 1.90769 1.52055 1.16938 1.85550 1.19771 1.03925 0.95021 0.93031 1.21160 0.96669 0.92328 0.99776 1.20241 0.98385 1.01611 0.87879 1.20556 1.03533 0.92661 0.94969 1.75331 1.20780 1.19197 1.01222 1.77925 1.11457 0.90065 1.21868 1.47566 1.44989 1.12017 1.06049 1.22789 1.06484 0.75295 1.02239 1.19739 1.08058 0.96039 0.87967 1.20139 0.96303 1.00756 0.88148 0.91027 0.90526 0.93664 0.89483 0.89489 0.91333 0.92636 0.92523 0.91697 0.96360 0.97047 0.79387 0.93926 0.74758 0.81072 0.81834 0.87033 0.86407 0.86175 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.48 71.98 0.68 -1.42 16 2 C 0.14 2.18 2.57 44.99 0.12 2.30 16 3 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 4 C -0.12 -1.72 4.75 30.60 0.15 -1.57 16 5 C -0.11 -2.20 5.10 30.59 0.16 -2.04 16 6 C -0.11 -3.24 5.33 30.59 0.16 -3.08 16 7 C 0.15 5.82 6.26 86.38 0.54 6.36 16 8 N -0.75 -38.63 5.60 -343.44 -1.92 -40.56 16 9 C -0.25 -14.17 9.99 84.03 0.84 -13.33 16 10 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 11 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 12 N -0.97 -59.48 13.06 21.65 0.28 -59.19 16 13 Si 0.97 46.42 29.55 68.60 2.03 48.44 16 14 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 N -0.70 -9.71 4.48 -445.53 -2.00 -11.71 16 18 C 0.56 10.37 7.73 86.75 0.67 11.04 16 19 O -0.57 -14.55 15.98 -3.92 -0.06 -14.61 16 20 C -0.11 -1.73 5.88 -20.06 -0.12 -1.85 16 21 C -0.08 -0.93 9.46 22.28 0.21 -0.71 16 22 C -0.06 -0.87 10.03 22.19 0.22 -0.65 16 23 C 0.01 0.20 7.36 39.75 0.29 0.49 16 24 N -0.29 -7.13 12.42 -52.39 -0.65 -7.78 16 25 N -0.03 -0.70 13.07 37.02 0.48 -0.22 16 26 N -0.30 -4.88 3.80 -361.28 -1.37 -6.25 16 27 C 0.07 0.35 11.40 127.77 1.46 1.81 16 28 C 0.00 0.02 6.93 39.02 0.27 0.29 16 29 C -0.03 -0.50 9.59 22.58 0.22 -0.28 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.07 1.32 7.75 -2.39 -0.02 1.30 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.37 20.27 7.67 -92.71 -0.71 19.56 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.41 3.56 6.60 -92.71 -0.61 2.95 16 44 H 0.17 0.89 6.36 -2.91 -0.02 0.87 16 45 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.11 0.16 8.14 -2.38 -0.02 0.14 16 47 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 49 H 0.15 2.15 7.63 -2.91 -0.02 2.13 16 Total: -1.00 -79.69 410.30 2.77 -76.92 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.35 Total: 21.64 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.33 Total: -6.67 kcal Atomic # 7 Polarization: -120.54 SS G_CDS: -5.18 Total: -125.71 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.06 Total: -14.61 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -79.69 2.77 -76.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176368458.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.336 kcal (2) G-P(sol) polarization free energy of solvation -79.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds