Wall clock time and date at job start Wed Apr 1 2020 04:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47328 * 2 1 4 4 C 1.53005 * 109.47204 * 239.99994 * 2 1 3 5 5 C 1.52997 * 109.47177 * 174.99906 * 4 2 1 6 6 C 1.52992 * 109.47340 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47340 * 180.02562 * 6 5 4 8 8 N 1.46510 * 109.46992 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99851 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99764 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99922 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00143 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47217 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47033 * 119.99792 * 13 11 9 16 16 H 1.48495 * 109.47417 * 240.00219 * 13 11 9 17 17 N 1.46507 * 109.47139 * 119.99987 * 2 1 3 18 18 C 1.34776 * 119.99784 * 274.72256 * 17 2 1 19 19 O 1.21595 * 120.00055 * 0.27668 * 18 17 2 20 20 C 1.47519 * 119.99978 * 180.27844 * 18 17 2 21 21 C 1.39255 * 120.24595 * 315.82230 * 20 18 17 22 22 C 1.38443 * 120.27645 * 179.75111 * 21 20 18 23 23 C 1.37636 * 120.80013 * 0.52863 * 22 21 20 24 24 C 1.40084 * 120.15130 * 359.74749 * 23 22 21 25 25 N 1.35406 * 133.03399 * 180.02562 * 24 23 22 26 26 N 1.28657 * 110.10554 * 179.97438 * 25 24 23 27 27 N 1.40254 * 109.43359 * 359.97438 * 26 25 24 28 28 C 1.46498 * 126.66535 * 179.97438 * 27 26 25 29 29 C 1.36979 * 106.66872 * 0.02562 * 27 26 25 30 30 H 1.08988 * 109.47156 * 60.00254 * 1 2 3 31 31 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46932 * 299.99649 * 1 2 3 33 33 H 1.09001 * 109.46777 * 294.99875 * 4 2 1 34 34 H 1.08997 * 109.46747 * 54.99893 * 4 2 1 35 35 H 1.09001 * 109.47313 * 300.00236 * 5 4 2 36 36 H 1.09001 * 109.47212 * 59.99564 * 5 4 2 37 37 H 1.09010 * 109.47144 * 300.00070 * 6 5 4 38 38 H 1.09001 * 109.47432 * 59.99566 * 6 5 4 39 39 H 1.09001 * 109.47241 * 299.99552 * 7 6 5 40 40 H 1.08997 * 109.47293 * 60.00188 * 7 6 5 41 41 H 0.97000 * 119.99688 * 359.97438 * 8 7 6 42 42 H 0.96999 * 120.00440 * 180.02562 * 12 11 9 43 43 H 0.96992 * 120.00075 * 95.00150 * 17 2 1 44 44 H 1.08005 * 119.85887 * 0.02562 * 21 20 18 45 45 H 1.08002 * 119.59622 * 180.25221 * 22 21 20 46 46 H 1.08002 * 119.92791 * 179.72817 * 23 22 21 47 47 H 1.09001 * 109.47220 * 263.86502 * 28 27 26 48 48 H 1.08997 * 109.47314 * 23.86382 * 28 27 26 49 49 H 1.09000 * 109.46941 * 143.86196 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3339 -2.5632 7 6 5.5996 -1.2265 -2.6273 8 7 6.0880 -1.9172 -3.8236 9 6 7.4301 -1.9544 -4.0927 10 1 8.1286 -1.4743 -3.4233 11 6 7.8929 -2.6092 -5.2258 12 7 7.0417 -3.1947 -6.0412 13 14 9.7236 -2.6594 -5.5933 14 1 10.4622 -1.9323 -4.5298 15 1 10.1813 -4.0715 -5.6362 16 1 9.9829 -2.0149 -6.9058 17 7 2.0183 -0.6906 1.1962 18 6 2.1524 -0.0169 2.3558 19 8 1.8632 1.1629 2.4104 20 6 2.6499 -0.7108 3.5588 21 6 2.1691 -1.9754 3.8883 22 6 2.6394 -2.6294 5.0143 23 6 3.5780 -2.0405 5.8308 24 6 4.0751 -0.7666 5.5267 25 7 4.9799 0.0404 6.1297 26 7 5.1086 1.1345 5.4653 27 7 4.2631 1.1035 4.3467 28 6 4.1100 2.1532 3.3364 29 6 3.6074 -0.0987 4.3831 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3574 36 1 3.9995 -1.0727 -0.4260 37 1 3.7864 -2.3843 -2.5200 38 1 3.6401 -0.8741 -3.4508 39 1 5.8884 -0.1763 -2.6704 40 1 6.0339 -1.6867 -1.7399 41 1 5.4606 -2.3487 -4.4245 42 1 7.3650 -3.6526 -6.8328 43 1 2.2490 -1.6317 1.1527 44 1 1.4294 -2.4499 3.2605 45 1 2.2618 -3.6116 5.2574 46 1 3.9318 -2.5616 6.7082 47 1 3.2505 2.7754 3.5862 48 1 5.0093 2.7686 3.3126 49 1 3.9561 1.6968 2.3586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176861942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:50 Heat of formation + Delta-G solvation = 71.476058 kcal Electronic energy + Delta-G solvation = -29557.153363 eV Core-core repulsion = 25521.010247 eV Total energy + Delta-G solvation = -4036.143116 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50915 -40.27856 -37.87415 -37.11312 -35.38141 -34.80529 -33.40537 -32.15723 -30.91841 -30.69066 -30.14191 -27.75464 -27.52618 -25.09371 -24.28412 -23.20215 -22.99063 -22.03720 -20.98245 -20.73400 -20.57810 -18.59299 -17.82454 -17.08651 -17.04008 -16.59418 -16.37769 -15.94582 -15.38186 -15.15353 -14.76422 -14.64514 -14.41975 -14.05880 -13.76737 -13.63193 -13.28129 -13.21724 -13.07158 -13.00364 -12.85349 -12.63726 -12.52226 -12.32293 -12.12700 -11.86129 -11.57944 -11.48279 -11.31806 -11.08304 -11.00789 -10.85047 -10.78271 -10.46020 -10.38599 -10.26202 -9.99734 -9.70537 -9.43083 -9.34903 -8.88778 -8.74211 -6.93003 -5.77915 -3.06473 -0.15956 0.80102 1.60584 1.76891 2.32491 2.72065 3.14847 3.42278 3.48007 3.50256 3.63793 4.08087 4.15951 4.23934 4.36671 4.44633 4.61008 4.64845 4.76865 4.85636 4.87321 4.96111 5.08419 5.14487 5.24917 5.30126 5.33378 5.35080 5.42727 5.48393 5.54154 5.60557 5.67596 5.69375 5.76098 5.78758 5.85675 6.00241 6.04667 6.09041 6.20026 6.23261 6.24886 6.33285 6.40212 6.84546 6.88438 7.06975 7.62350 7.69249 7.74583 8.41489 9.52407 10.11020 10.45578 11.45253 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.002250 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.783914 B =12442.110656 C =13766.450207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.090 0.910 4 C -0.128 4.128 5 C -0.115 4.115 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.735 5.735 9 C -0.239 4.239 10 H 0.070 0.930 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.711 5.711 18 C 0.562 3.438 19 O -0.536 6.536 20 C -0.136 4.136 21 C -0.032 4.032 22 C -0.143 4.143 23 C -0.008 4.008 24 C -0.026 4.026 25 N -0.218 5.218 26 N -0.004 5.004 27 N -0.382 5.382 28 C 0.104 3.896 29 C 0.126 3.874 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.383 0.617 42 H 0.254 0.746 43 H 0.404 0.596 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.091 0.909 48 H 0.093 0.907 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.088 3.801 22.372 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.108 0.892 4 C -0.165 4.165 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.370 4.370 10 H 0.088 0.912 11 C -0.211 4.211 12 N -0.584 5.584 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.218 1.218 17 N -0.362 5.362 18 C 0.348 3.652 19 O -0.414 6.414 20 C -0.144 4.144 21 C -0.054 4.054 22 C -0.164 4.164 23 C -0.031 4.031 24 C -0.150 4.150 25 N -0.096 5.096 26 N 0.016 4.984 27 N -0.174 5.174 28 C -0.037 4.037 29 C 0.002 3.998 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.033 0.967 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.239 0.761 44 H 0.161 0.839 45 H 0.163 0.837 46 H 0.162 0.838 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.053 5.632 23.107 28.695 hybrid contribution 0.222 -1.080 -1.194 1.626 sum -15.831 4.552 21.913 27.414 Atomic orbital electron populations 1.22174 0.95047 1.02263 1.02653 1.21127 0.93967 0.97704 0.83572 0.89182 1.21955 0.96878 1.01069 0.96641 1.21526 0.93936 1.01073 0.98735 1.21724 0.97285 1.00306 0.97030 1.20641 0.90971 0.95303 0.90585 1.42393 1.05356 1.64963 1.25175 1.19294 0.83896 1.28349 1.05448 0.91203 1.24747 0.97761 1.00933 0.97693 1.69668 1.32711 1.40803 1.15170 0.86114 0.85042 0.77261 0.77794 1.20543 1.21823 1.21818 1.46113 1.66347 1.14294 1.09421 1.18048 0.77671 0.86533 0.82952 1.90803 1.50218 1.15336 1.85016 1.18828 1.01380 0.96522 0.97665 1.21337 0.96719 0.90968 0.96354 1.20934 0.98814 1.01269 0.95392 1.20665 0.93254 0.90381 0.98771 1.19925 1.01302 0.98303 0.95446 1.74886 1.13879 0.98919 1.21923 1.81687 1.09289 1.14681 0.92764 1.50125 1.31469 1.13866 1.21987 1.22231 1.04020 0.88669 0.88736 1.18952 0.96131 0.87677 0.97006 0.91328 0.92335 0.92199 0.91170 0.89981 0.92028 0.92231 0.92070 0.91983 0.96635 0.96709 0.78342 0.93564 0.76124 0.83868 0.83689 0.83820 0.89022 0.88845 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.49 37.16 0.35 -0.80 16 2 C 0.14 1.10 2.58 -67.92 -0.17 0.93 16 3 H 0.09 0.84 7.57 -51.93 -0.39 0.45 16 4 C -0.13 -1.05 4.75 -26.73 -0.13 -1.18 16 5 C -0.11 -1.27 5.10 -26.74 -0.14 -1.41 16 6 C -0.13 -1.89 5.33 -26.74 -0.14 -2.03 16 7 C 0.15 3.07 6.26 -4.04 -0.03 3.05 16 8 N -0.73 -18.96 5.60 -59.90 -0.34 -19.29 16 9 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 12 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 13 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 N -0.71 -5.31 4.47 -54.85 -0.25 -5.55 16 18 C 0.56 5.33 6.40 -12.48 -0.08 5.25 16 19 O -0.54 -6.40 13.33 5.28 0.07 -6.33 16 20 C -0.14 -1.24 5.73 -104.93 -0.60 -1.84 16 21 C -0.03 -0.19 9.40 -39.13 -0.37 -0.56 16 22 C -0.14 -0.75 9.98 -39.73 -0.40 -1.15 16 23 C -0.01 -0.06 10.09 -39.11 -0.39 -0.46 16 24 C -0.03 -0.28 7.26 -84.76 -0.62 -0.90 16 25 N -0.22 -2.82 12.40 32.15 0.40 -2.43 16 26 N 0.00 -0.05 13.72 60.35 0.83 0.77 16 27 N -0.38 -4.53 4.10 -65.28 -0.27 -4.80 16 28 C 0.10 0.99 9.73 59.85 0.58 1.57 16 29 C 0.13 1.43 6.81 -83.92 -0.57 0.86 16 30 H 0.07 0.44 8.14 -51.94 -0.42 0.02 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.66 7.75 -51.93 -0.40 0.25 16 37 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 10.29 7.67 -40.82 -0.31 9.97 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.40 2.31 8.30 -40.82 -0.34 1.97 16 44 H 0.14 0.45 8.06 -52.48 -0.42 0.02 16 45 H 0.15 0.32 8.06 -52.49 -0.42 -0.11 16 46 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 47 H 0.09 0.85 7.73 -51.93 -0.40 0.45 16 48 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.09 0.91 6.17 -51.93 -0.32 0.59 16 LS Contribution 407.02 15.07 6.13 6.13 Total: -1.00 -35.33 407.02 -8.30 -43.63 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.63 Total: 4.24 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -2.94 Total: -6.18 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 1.10 Total: -59.07 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: 0.07 Total: -6.33 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.33 -8.30 -43.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176861942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.103 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds