Wall clock time and date at job start Wed Apr 1 2020 04:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47328 * 2 1 4 4 C 1.53005 * 109.47204 * 239.99994 * 2 1 3 5 5 C 1.52997 * 109.47177 * 174.99906 * 4 2 1 6 6 C 1.52992 * 109.47340 * 180.02562 * 5 4 2 7 7 C 1.52997 * 109.47340 * 180.02562 * 6 5 4 8 8 N 1.46510 * 109.46992 * 179.97438 * 7 6 5 9 9 C 1.36939 * 119.99851 * 180.02562 * 8 7 6 10 10 H 1.08007 * 119.99764 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99922 * 179.97438 * 9 8 7 12 12 N 1.31618 * 120.00143 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00163 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47217 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47033 * 119.99792 * 13 11 9 16 16 H 1.48495 * 109.47417 * 240.00219 * 13 11 9 17 17 N 1.46507 * 109.47139 * 119.99987 * 2 1 3 18 18 C 1.34776 * 119.99784 * 274.72256 * 17 2 1 19 19 O 1.21595 * 120.00055 * 0.27668 * 18 17 2 20 20 C 1.47519 * 119.99978 * 180.27844 * 18 17 2 21 21 C 1.39255 * 120.24595 * 315.82230 * 20 18 17 22 22 C 1.38443 * 120.27645 * 179.75111 * 21 20 18 23 23 C 1.37636 * 120.80013 * 0.52863 * 22 21 20 24 24 C 1.40084 * 120.15130 * 359.74749 * 23 22 21 25 25 N 1.35406 * 133.03399 * 180.02562 * 24 23 22 26 26 N 1.28657 * 110.10554 * 179.97438 * 25 24 23 27 27 N 1.40254 * 109.43359 * 359.97438 * 26 25 24 28 28 C 1.46498 * 126.66535 * 179.97438 * 27 26 25 29 29 C 1.36979 * 106.66872 * 0.02562 * 27 26 25 30 30 H 1.08988 * 109.47156 * 60.00254 * 1 2 3 31 31 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46932 * 299.99649 * 1 2 3 33 33 H 1.09001 * 109.46777 * 294.99875 * 4 2 1 34 34 H 1.08997 * 109.46747 * 54.99893 * 4 2 1 35 35 H 1.09001 * 109.47313 * 300.00236 * 5 4 2 36 36 H 1.09001 * 109.47212 * 59.99564 * 5 4 2 37 37 H 1.09010 * 109.47144 * 300.00070 * 6 5 4 38 38 H 1.09001 * 109.47432 * 59.99566 * 6 5 4 39 39 H 1.09001 * 109.47241 * 299.99552 * 7 6 5 40 40 H 1.08997 * 109.47293 * 60.00188 * 7 6 5 41 41 H 0.97000 * 119.99688 * 359.97438 * 8 7 6 42 42 H 0.96999 * 120.00440 * 180.02562 * 12 11 9 43 43 H 0.96992 * 120.00075 * 95.00150 * 17 2 1 44 44 H 1.08005 * 119.85887 * 0.02562 * 21 20 18 45 45 H 1.08002 * 119.59622 * 180.25221 * 22 21 20 46 46 H 1.08002 * 119.92791 * 179.72817 * 23 22 21 47 47 H 1.09001 * 109.47220 * 263.86502 * 28 27 26 48 48 H 1.08997 * 109.47314 * 23.86382 * 28 27 26 49 49 H 1.09000 * 109.46941 * 143.86196 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 6 4.0748 -1.3339 -2.5632 7 6 5.5996 -1.2265 -2.6273 8 7 6.0880 -1.9172 -3.8236 9 6 7.4301 -1.9544 -4.0927 10 1 8.1286 -1.4743 -3.4233 11 6 7.8929 -2.6092 -5.2258 12 7 7.0417 -3.1947 -6.0412 13 14 9.7236 -2.6594 -5.5933 14 1 10.4622 -1.9323 -4.5298 15 1 10.1813 -4.0715 -5.6362 16 1 9.9829 -2.0149 -6.9058 17 7 2.0183 -0.6906 1.1962 18 6 2.1524 -0.0169 2.3558 19 8 1.8632 1.1629 2.4104 20 6 2.6499 -0.7108 3.5588 21 6 2.1691 -1.9754 3.8883 22 6 2.6394 -2.6294 5.0143 23 6 3.5780 -2.0405 5.8308 24 6 4.0751 -0.7666 5.5267 25 7 4.9799 0.0404 6.1297 26 7 5.1086 1.1345 5.4653 27 7 4.2631 1.1035 4.3467 28 6 4.1100 2.1532 3.3364 29 6 3.6074 -0.0987 4.3831 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2617 -2.1369 35 1 3.8532 0.4370 -1.3574 36 1 3.9995 -1.0727 -0.4260 37 1 3.7864 -2.3843 -2.5200 38 1 3.6401 -0.8741 -3.4508 39 1 5.8884 -0.1763 -2.6704 40 1 6.0339 -1.6867 -1.7399 41 1 5.4606 -2.3487 -4.4245 42 1 7.3650 -3.6526 -6.8328 43 1 2.2490 -1.6317 1.1527 44 1 1.4294 -2.4499 3.2605 45 1 2.2618 -3.6116 5.2574 46 1 3.9318 -2.5616 6.7082 47 1 3.2505 2.7754 3.5862 48 1 5.0093 2.7686 3.3126 49 1 3.9561 1.6968 2.3586 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176861942.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:49 Heat of formation + Delta-G solvation = 47.130308 kcal Electronic energy + Delta-G solvation = -29558.209074 eV Core-core repulsion = 25521.010247 eV Total energy + Delta-G solvation = -4037.198827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.25147 -40.98557 -38.50915 -37.99815 -36.86720 -35.61063 -34.80596 -33.23814 -32.21645 -31.38462 -31.01690 -28.82111 -28.51329 -26.02915 -25.61197 -24.16105 -23.69334 -23.32926 -22.05382 -21.68141 -21.27346 -19.26743 -19.13573 -18.50225 -17.77698 -17.33077 -17.13056 -16.72558 -16.56546 -16.30369 -15.92364 -15.47271 -15.35214 -15.23766 -15.11776 -14.57732 -14.52343 -14.25725 -14.07533 -13.88945 -13.50723 -13.32508 -13.20017 -13.06761 -12.93747 -12.90798 -12.85841 -12.80319 -12.45556 -12.32652 -12.20516 -12.12775 -11.90261 -11.82047 -11.74602 -11.49506 -11.39203 -10.98309 -10.96938 -10.12861 -10.02909 -9.39513 -9.03463 -7.98930 -5.28058 -0.80591 0.15594 0.86495 1.03377 1.45465 1.46096 1.56407 1.62710 2.08299 2.53326 2.54629 2.96451 3.34642 3.40252 3.49038 3.60546 3.70909 3.80915 4.04308 4.05732 4.12622 4.13695 4.20223 4.29865 4.36487 4.42890 4.51062 4.60513 4.60961 4.65496 4.70912 4.79684 4.81823 4.87655 4.94518 5.00042 5.02474 5.11768 5.14717 5.23715 5.28313 5.36240 5.41971 5.42184 5.44482 5.52407 5.56036 5.63968 6.24581 6.46590 6.80449 7.11043 7.30293 8.06728 8.30148 9.24880 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.010173 B = 0.002250 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.783914 B =12442.110656 C =13766.450207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.072 0.928 4 C -0.117 4.117 5 C -0.105 4.105 6 C -0.112 4.112 7 C 0.148 3.852 8 N -0.749 5.749 9 C -0.250 4.250 10 H 0.071 0.929 11 C -0.075 4.075 12 N -0.968 5.968 13 Si 0.974 3.026 14 H -0.268 1.268 15 H -0.290 1.290 16 H -0.291 1.291 17 N -0.699 5.699 18 C 0.562 3.438 19 O -0.567 6.567 20 C -0.159 4.159 21 C -0.011 4.011 22 C -0.126 4.126 23 C -0.014 4.014 24 C -0.049 4.049 25 N -0.239 5.239 26 N -0.040 5.040 27 N -0.389 5.389 28 C 0.107 3.893 29 C 0.105 3.895 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.011 0.989 40 H 0.014 0.986 41 H 0.375 0.625 42 H 0.253 0.747 43 H 0.415 0.585 44 H 0.180 0.820 45 H 0.189 0.811 46 H 0.166 0.834 47 H 0.089 0.911 48 H 0.105 0.895 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.450 1.855 22.809 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.090 0.910 4 C -0.155 4.155 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.022 3.978 8 N -0.391 5.391 9 C -0.381 4.381 10 H 0.089 0.911 11 C -0.267 4.267 12 N -0.619 5.619 13 Si 0.802 3.198 14 H -0.193 1.193 15 H -0.217 1.217 16 H -0.218 1.218 17 N -0.351 5.351 18 C 0.349 3.651 19 O -0.448 6.448 20 C -0.167 4.167 21 C -0.033 4.033 22 C -0.147 4.147 23 C -0.036 4.036 24 C -0.174 4.174 25 N -0.116 5.116 26 N -0.019 5.019 27 N -0.183 5.183 28 C -0.033 4.033 29 C -0.018 4.018 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.032 0.968 41 H 0.207 0.793 42 H 0.062 0.938 43 H 0.252 0.748 44 H 0.198 0.802 45 H 0.206 0.794 46 H 0.183 0.817 47 H 0.107 0.893 48 H 0.124 0.876 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.410 3.694 23.578 29.541 hybrid contribution 0.560 -0.554 -1.310 1.529 sum -16.849 3.139 22.267 28.100 Atomic orbital electron populations 1.22107 0.93954 1.03130 1.02286 1.21027 0.94680 0.96779 0.83419 0.90983 1.21856 0.94356 1.02255 0.97001 1.21429 0.96107 1.00091 0.96725 1.21602 0.93484 1.01073 0.98867 1.20857 0.94480 0.94147 0.88345 1.42631 1.04490 1.65372 1.26650 1.19667 0.85352 1.27721 1.05408 0.91062 1.25580 1.02172 1.01161 0.97792 1.69810 1.34598 1.41882 1.15628 0.85075 0.79945 0.77151 0.77605 1.19293 1.21665 1.21768 1.46015 1.65645 1.14727 1.08687 1.18150 0.77245 0.86170 0.83492 1.90788 1.51679 1.16752 1.85532 1.18977 1.02059 0.97927 0.97752 1.21882 0.95710 0.89316 0.96376 1.21464 0.96915 1.02402 0.93881 1.21116 0.93457 0.89061 0.99979 1.20455 1.01581 0.99684 0.95673 1.74784 1.14858 0.99402 1.22599 1.81592 1.10931 1.15414 0.93972 1.50262 1.31518 1.14596 1.21930 1.22239 1.04493 0.88493 0.88113 1.19400 0.96967 0.87636 0.97841 0.90688 0.90789 0.93615 0.89477 0.89419 0.92623 0.91896 0.91746 0.92314 0.97059 0.96755 0.79336 0.93828 0.74795 0.80243 0.79396 0.81664 0.89285 0.87647 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.49 71.98 0.68 -1.16 16 2 C 0.14 2.00 2.58 44.99 0.12 2.12 16 3 H 0.07 1.30 7.57 -2.39 -0.02 1.28 16 4 C -0.12 -1.62 4.75 30.59 0.15 -1.48 16 5 C -0.11 -2.16 5.10 30.59 0.16 -2.00 16 6 C -0.11 -3.24 5.33 30.59 0.16 -3.07 16 7 C 0.15 5.90 6.26 86.38 0.54 6.44 16 8 N -0.75 -38.71 5.60 -343.44 -1.92 -40.63 16 9 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 10 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 11 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 12 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 13 Si 0.97 46.41 29.55 68.60 2.03 48.44 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 16 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 17 N -0.70 -8.93 4.47 -445.70 -1.99 -10.92 16 18 C 0.56 10.10 6.40 86.69 0.55 10.65 16 19 O -0.57 -13.66 13.33 -4.01 -0.05 -13.71 16 20 C -0.16 -2.67 5.73 -20.06 -0.11 -2.78 16 21 C -0.01 -0.09 9.40 22.56 0.21 0.12 16 22 C -0.13 -0.80 9.98 22.18 0.22 -0.58 16 23 C -0.01 -0.18 10.09 22.58 0.23 0.05 16 24 C -0.05 -1.07 7.26 39.58 0.29 -0.78 16 25 N -0.24 -6.49 12.40 -52.20 -0.65 -7.14 16 26 N -0.04 -1.12 13.72 37.02 0.51 -0.61 16 27 N -0.39 -9.77 4.10 -360.44 -1.48 -11.25 16 28 C 0.11 2.18 9.73 127.77 1.24 3.43 16 29 C 0.11 2.40 6.81 39.40 0.27 2.67 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.26 7.75 -2.39 -0.02 1.24 16 37 H 0.06 1.82 8.14 -2.38 -0.02 1.81 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.37 20.29 7.67 -92.71 -0.71 19.58 16 42 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.41 3.37 8.30 -92.71 -0.77 2.60 16 44 H 0.18 0.14 8.06 -2.91 -0.02 0.12 16 45 H 0.19 -0.36 8.06 -2.91 -0.02 -0.38 16 46 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 47 H 0.09 1.81 7.73 -2.39 -0.02 1.79 16 48 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.09 1.85 6.17 -2.39 -0.01 1.84 16 Total: -1.00 -79.24 407.02 2.23 -77.02 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -0.51 Total: 21.60 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: 6.01 Total: -3.68 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -5.25 Total: -129.67 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.05 Total: -13.71 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -79.24 2.23 -77.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176861942.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.146 kcal (2) G-P(sol) polarization free energy of solvation -79.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds