Wall clock time and date at job start Wed Apr 1 2020 04:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39795 * 125.34073 * 2 1 4 4 C 1.30195 * 110.13099 * 180.02562 * 3 2 1 5 5 C 1.45970 * 107.58944 * 0.02562 * 4 3 2 6 6 C 1.39662 * 134.12534 * 180.30399 * 5 4 3 7 7 C 1.39508 * 117.95158 * 180.15068 * 6 5 4 8 8 C 1.47685 * 120.40538 * 179.78728 * 7 6 5 9 9 O 1.21573 * 120.00279 * 359.72185 * 8 7 6 10 10 N 1.34777 * 119.99444 * 179.71880 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72385 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47510 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47271 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.46959 * 179.97438 * 16 15 14 18 18 C 1.36936 * 119.99757 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00471 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99709 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47118 * 60.00358 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47259 * 300.00259 * 22 20 18 26 26 C 1.40185 * 119.17733 * 359.50889 * 7 6 5 27 27 N 1.31185 * 121.37943 * 0.25961 * 26 7 6 28 28 C 1.32929 * 121.84272 * 359.97438 * 27 26 7 29 29 H 1.08995 * 109.46664 * 269.96011 * 1 2 3 30 30 H 1.09000 * 109.46674 * 29.95355 * 1 2 3 31 31 H 1.08994 * 109.47071 * 149.95587 * 1 2 3 32 32 H 1.08006 * 126.20969 * 179.97438 * 4 3 2 33 33 H 1.08005 * 121.01979 * 359.91436 * 6 5 4 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 36 36 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 37 37 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 38 38 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 39 39 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 40 40 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 41 41 H 1.09008 * 109.47165 * 300.00083 * 14 13 12 42 42 H 1.08998 * 109.47285 * 60.00156 * 14 13 12 43 43 H 1.09000 * 109.46793 * 300.00282 * 15 14 13 44 44 H 1.08998 * 109.47049 * 59.99608 * 15 14 13 45 45 H 1.08994 * 109.47190 * 299.99512 * 16 15 14 46 46 H 1.08998 * 109.47408 * 59.99824 * 16 15 14 47 47 H 0.97000 * 120.00380 * 0.02562 * 17 16 15 48 48 H 0.96996 * 120.00448 * 179.97438 * 21 20 18 49 49 H 1.07999 * 119.30570 * 180.27041 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5907 -0.6597 -0.0016 6 6 4.6327 -1.5896 0.0029 7 6 4.3001 -2.9444 -0.0033 8 6 5.3589 -3.9740 -0.0038 9 8 6.5287 -3.6430 -0.0039 10 7 5.0281 -5.2806 -0.0040 11 6 6.0784 -6.3019 -0.0106 12 6 5.4383 -7.6916 -0.0165 13 6 6.5351 -8.7582 -0.0240 14 6 5.8951 -10.1479 -0.0305 15 6 6.9919 -11.2147 -0.0374 16 6 6.3517 -12.6043 -0.0445 17 7 7.4020 -13.6256 -0.0518 18 6 7.0660 -14.9531 -0.0584 19 1 6.0269 -15.2472 -0.0579 20 6 8.0611 -15.9209 -0.0658 21 7 9.3276 -15.5626 -0.0659 22 14 7.6028 -17.7318 -0.0741 23 1 6.7999 -18.0336 -1.2864 24 1 8.8387 -18.5552 -0.0807 25 1 6.8055 -18.0463 1.1386 26 6 2.9484 -3.3163 -0.0031 27 7 1.9927 -2.4177 -0.0023 28 6 2.2553 -1.1146 -0.0011 29 1 -0.3632 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5145 32 1 4.3744 1.4723 -0.0011 33 1 5.6642 -1.2696 0.0070 34 1 4.0948 -5.5447 -0.0043 35 1 6.6958 -6.1826 -0.9010 36 1 6.6984 -6.1913 0.8790 37 1 4.8210 -7.8110 0.8738 38 1 4.8183 -7.8023 -0.9062 39 1 7.1521 -8.6388 -0.9145 40 1 7.1555 -8.6478 0.8655 41 1 5.2777 -10.2678 0.8599 42 1 5.2750 -10.2582 -0.9201 43 1 7.6095 -11.0949 -0.9275 44 1 7.6116 -11.1043 0.8524 45 1 5.7339 -12.7243 0.8453 46 1 5.7322 -12.7144 -0.9346 47 1 8.3354 -13.3616 -0.0511 48 1 10.0230 -16.2388 -0.0706 49 1 2.6886 -4.3646 -0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179911693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:52 Heat of formation + Delta-G solvation = 58.804628 kcal Electronic energy + Delta-G solvation = -27250.687660 eV Core-core repulsion = 23213.995070 eV Total energy + Delta-G solvation = -4036.692590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.23449 -40.24224 -38.36216 -36.85557 -35.47442 -34.46683 -34.01352 -32.42051 -31.96575 -30.98942 -29.84356 -27.68422 -26.86928 -24.79187 -24.46975 -23.63242 -22.25250 -21.57404 -21.46224 -20.74103 -20.65475 -18.45648 -18.32444 -17.31202 -16.96258 -16.52675 -16.25538 -16.24195 -15.72761 -15.34580 -14.83852 -14.63982 -14.41894 -14.39685 -14.00818 -13.90304 -13.72026 -13.46389 -13.38879 -13.13938 -13.02124 -12.82762 -12.71306 -12.35579 -11.76775 -11.74718 -11.37044 -11.19938 -11.11648 -10.90860 -10.75702 -10.72016 -10.64473 -10.39800 -10.25022 -10.04255 -9.95109 -9.73653 -9.62449 -9.49184 -8.93544 -8.82722 -6.87531 -5.72647 -3.01067 0.11146 0.19915 1.47104 1.77960 2.38679 2.67881 3.25023 3.41654 3.46416 3.50284 3.51779 3.60937 3.91904 4.13239 4.17266 4.41105 4.51525 4.62551 4.64157 4.67562 4.74031 4.75373 4.87519 4.92657 4.95226 5.22809 5.31123 5.38450 5.41461 5.52739 5.56431 5.63982 5.69218 5.72120 5.75019 5.93663 5.96191 6.04323 6.07967 6.13949 6.34699 6.35433 6.42946 6.49925 6.73284 6.93246 6.97272 7.04110 7.17223 7.72696 7.77381 8.46776 9.57321 10.17110 10.51582 11.50459 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.001128 C = 0.001095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.714345 B =24812.152533 C =25560.867493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.391 5.391 3 N -0.239 5.239 4 C 0.098 3.902 5 C -0.239 4.239 6 C 0.075 3.925 7 C -0.235 4.235 8 C 0.570 3.430 9 O -0.536 6.536 10 N -0.725 5.725 11 C 0.118 3.882 12 C -0.132 4.132 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.240 4.240 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.206 3.794 27 N -0.504 5.504 28 C 0.330 3.670 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.207 0.793 33 H 0.156 0.844 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.764 37.183 0.103 40.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.181 5.181 3 N -0.051 5.051 4 C -0.101 4.101 5 C -0.249 4.249 6 C 0.047 3.953 7 C -0.243 4.243 8 C 0.356 3.644 9 O -0.413 6.413 10 N -0.377 5.377 11 C -0.005 4.005 12 C -0.170 4.170 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.024 3.976 17 N -0.379 5.379 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C 0.034 3.966 27 N -0.218 5.218 28 C 0.090 3.910 29 H 0.092 0.908 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.224 0.776 33 H 0.174 0.826 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.961 38.077 0.105 42.101 hybrid contribution 0.874 -1.539 0.012 1.770 sum -17.087 36.538 0.117 40.336 Atomic orbital electron populations 1.21897 0.72938 1.04754 1.03610 1.48195 1.06601 0.99993 1.63274 1.76786 1.02754 1.07261 1.18256 1.25192 0.94951 0.92488 0.97473 1.20483 0.93975 0.94913 1.15514 1.21197 0.99439 0.89969 0.84722 1.20638 0.94839 0.94557 1.14261 1.17805 0.87991 0.82199 0.76376 1.90810 1.19171 1.81501 1.49859 1.45932 1.10687 1.05574 1.75529 1.21503 0.89972 0.86141 1.02908 1.21844 0.99325 0.92951 1.02856 1.21517 0.97369 0.93865 1.02690 1.21502 0.98379 0.93359 1.01906 1.21729 0.97901 0.94838 1.02005 1.20656 0.92036 0.87355 0.97515 1.42387 1.04321 1.01730 1.89477 1.19217 0.92423 0.82916 1.42598 0.91280 1.24742 0.95215 0.97985 1.03124 1.69649 0.98354 1.32499 1.57875 0.86262 0.76885 0.85180 0.77838 1.21277 1.21660 1.21283 1.22851 0.86811 0.98325 0.88565 1.66667 1.37306 0.98549 1.19249 1.19149 0.88750 0.88165 0.94928 0.90764 0.89135 0.88913 0.77611 0.82612 0.76579 0.91046 0.91038 0.91172 0.91182 0.91582 0.91578 0.92093 0.92087 0.92088 0.92084 0.96607 0.96603 0.78334 0.93488 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.46 11.43 59.85 0.68 1.15 16 2 N -0.39 -3.00 4.03 -67.17 -0.27 -3.27 16 3 N -0.24 -1.82 12.39 31.87 0.39 -1.43 16 4 C 0.10 0.56 12.30 -15.15 -0.19 0.38 16 5 C -0.24 -1.77 6.36 -105.20 -0.67 -2.44 16 6 C 0.08 0.53 9.76 -38.58 -0.38 0.16 16 7 C -0.24 -1.72 5.89 -104.83 -0.62 -2.34 16 8 C 0.57 5.06 7.77 -12.40 -0.10 4.97 16 9 O -0.54 -6.74 16.40 5.30 0.09 -6.65 16 10 N -0.73 -4.84 5.51 -61.30 -0.34 -5.18 16 11 C 0.12 0.91 5.67 -4.04 -0.02 0.88 16 12 C -0.13 -0.92 5.33 -26.73 -0.14 -1.07 16 13 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 14 C -0.11 -1.33 5.21 -26.73 -0.14 -1.47 16 15 C -0.13 -2.03 5.33 -26.73 -0.14 -2.17 16 16 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 17 N -0.74 -19.33 5.60 -59.92 -0.34 -19.66 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 22 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.21 1.28 10.69 -17.10 -0.18 1.10 16 27 N -0.50 -4.07 10.37 -12.03 -0.12 -4.19 16 28 C 0.33 2.80 7.96 -156.09 -1.24 1.56 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.21 0.34 8.06 -52.48 -0.42 -0.09 16 33 H 0.16 0.93 7.72 -52.48 -0.41 0.52 16 34 H 0.40 1.50 6.51 -40.82 -0.27 1.24 16 35 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.38 10.53 7.67 -40.82 -0.31 10.21 16 48 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 49 H 0.17 0.47 6.39 -52.49 -0.34 0.14 16 LS Contribution 413.51 15.07 6.23 6.23 Total: -1.00 -37.17 413.51 -9.83 -47.00 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.63 Total: 2.63 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.54 Total: -5.05 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: 0.05 Total: -61.83 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: 0.09 Total: -6.65 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -37.17 -9.83 -47.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179911693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.802 kcal (2) G-P(sol) polarization free energy of solvation -37.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds