Wall clock time and date at job start Wed Apr 1 2020 04:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39795 * 125.34073 * 2 1 4 4 C 1.30195 * 110.13099 * 180.02562 * 3 2 1 5 5 C 1.45970 * 107.58944 * 0.02562 * 4 3 2 6 6 C 1.39662 * 134.12534 * 180.30399 * 5 4 3 7 7 C 1.39508 * 117.95158 * 180.15068 * 6 5 4 8 8 C 1.47685 * 120.40538 * 179.78728 * 7 6 5 9 9 O 1.21573 * 120.00279 * 359.72185 * 8 7 6 10 10 N 1.34777 * 119.99444 * 179.71880 * 8 7 6 11 11 C 1.46499 * 119.99665 * 179.72385 * 10 8 7 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 C 1.52997 * 109.47000 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47000 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47510 * 180.02562 * 14 13 12 16 16 C 1.52996 * 109.47271 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.46959 * 179.97438 * 16 15 14 18 18 C 1.36936 * 119.99757 * 179.97438 * 17 16 15 19 19 H 1.07992 * 120.00471 * 359.97438 * 18 17 16 20 20 C 1.38817 * 119.99709 * 179.97438 * 18 17 16 21 21 N 1.31614 * 120.00319 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47118 * 60.00358 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47259 * 300.00259 * 22 20 18 26 26 C 1.40185 * 119.17733 * 359.50889 * 7 6 5 27 27 N 1.31185 * 121.37943 * 0.25961 * 26 7 6 28 28 C 1.32929 * 121.84272 * 359.97438 * 27 26 7 29 29 H 1.08995 * 109.46664 * 269.96011 * 1 2 3 30 30 H 1.09000 * 109.46674 * 29.95355 * 1 2 3 31 31 H 1.08994 * 109.47071 * 149.95587 * 1 2 3 32 32 H 1.08006 * 126.20969 * 179.97438 * 4 3 2 33 33 H 1.08005 * 121.01979 * 359.91436 * 6 5 4 34 34 H 0.97001 * 120.00485 * 0.02562 * 10 8 7 35 35 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 36 36 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 37 37 H 1.08995 * 109.46638 * 300.00121 * 12 11 10 38 38 H 1.09006 * 109.47139 * 60.00254 * 12 11 10 39 39 H 1.08995 * 109.47672 * 299.99669 * 13 12 11 40 40 H 1.09007 * 109.47288 * 60.00489 * 13 12 11 41 41 H 1.09008 * 109.47165 * 300.00083 * 14 13 12 42 42 H 1.08998 * 109.47285 * 60.00156 * 14 13 12 43 43 H 1.09000 * 109.46793 * 300.00282 * 15 14 13 44 44 H 1.08998 * 109.47049 * 59.99608 * 15 14 13 45 45 H 1.08994 * 109.47190 * 299.99512 * 16 15 14 46 46 H 1.08998 * 109.47408 * 59.99824 * 16 15 14 47 47 H 0.97000 * 120.00380 * 0.02562 * 17 16 15 48 48 H 0.96996 * 120.00448 * 179.97438 * 21 20 18 49 49 H 1.07999 * 119.30570 * 180.27041 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2737 1.1403 0.0000 4 6 3.5301 0.7988 -0.0005 5 6 3.5907 -0.6597 -0.0016 6 6 4.6327 -1.5896 0.0029 7 6 4.3001 -2.9444 -0.0033 8 6 5.3589 -3.9740 -0.0038 9 8 6.5287 -3.6430 -0.0039 10 7 5.0281 -5.2806 -0.0040 11 6 6.0784 -6.3019 -0.0106 12 6 5.4383 -7.6916 -0.0165 13 6 6.5351 -8.7582 -0.0240 14 6 5.8951 -10.1479 -0.0305 15 6 6.9919 -11.2147 -0.0374 16 6 6.3517 -12.6043 -0.0445 17 7 7.4020 -13.6256 -0.0518 18 6 7.0660 -14.9531 -0.0584 19 1 6.0269 -15.2472 -0.0579 20 6 8.0611 -15.9209 -0.0658 21 7 9.3276 -15.5626 -0.0659 22 14 7.6028 -17.7318 -0.0741 23 1 6.7999 -18.0336 -1.2864 24 1 8.8387 -18.5552 -0.0807 25 1 6.8055 -18.0463 1.1386 26 6 2.9484 -3.3163 -0.0031 27 7 1.9927 -2.4177 -0.0023 28 6 2.2553 -1.1146 -0.0011 29 1 -0.3632 -0.0007 1.0276 30 1 -0.3633 0.8904 -0.5131 31 1 -0.3633 -0.8895 -0.5145 32 1 4.3744 1.4723 -0.0011 33 1 5.6642 -1.2696 0.0070 34 1 4.0948 -5.5447 -0.0043 35 1 6.6958 -6.1826 -0.9010 36 1 6.6984 -6.1913 0.8790 37 1 4.8210 -7.8110 0.8738 38 1 4.8183 -7.8023 -0.9062 39 1 7.1521 -8.6388 -0.9145 40 1 7.1555 -8.6478 0.8655 41 1 5.2777 -10.2678 0.8599 42 1 5.2750 -10.2582 -0.9201 43 1 7.6095 -11.0949 -0.9275 44 1 7.6116 -11.1043 0.8524 45 1 5.7339 -12.7243 0.8453 46 1 5.7322 -12.7144 -0.9346 47 1 8.3354 -13.3616 -0.0511 48 1 10.0230 -16.2388 -0.0706 49 1 2.6886 -4.3646 -0.0034 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179911693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:51 Heat of formation + Delta-G solvation = 33.874797 kcal Electronic energy + Delta-G solvation = -27251.768699 eV Core-core repulsion = 23213.995070 eV Total energy + Delta-G solvation = -4037.773629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.72979 -40.88666 -38.90504 -37.86898 -36.74892 -35.33500 -34.93188 -33.58189 -32.81864 -31.90823 -31.01834 -28.48118 -27.74358 -25.94862 -25.05848 -24.72887 -23.45478 -22.21904 -22.04076 -22.00472 -21.46101 -19.15047 -18.98493 -18.80307 -17.82002 -17.08165 -16.92866 -16.85120 -16.66968 -16.27253 -16.25477 -15.37440 -15.34454 -15.29569 -15.15497 -14.90569 -14.52411 -14.44376 -14.20242 -13.99255 -13.84890 -13.46251 -13.38227 -13.34452 -13.01932 -12.90436 -12.60514 -12.35652 -12.26812 -12.19623 -11.98915 -11.76927 -11.76229 -11.63117 -11.53246 -11.29449 -11.21576 -10.91166 -10.60142 -10.27242 -10.13019 -9.43515 -9.00168 -7.95146 -5.24678 -0.38520 -0.34149 1.04534 1.32382 1.47531 1.51297 1.57582 1.75539 2.08139 2.56906 2.69522 2.99569 3.15544 3.38248 3.46917 3.60680 3.69778 3.79490 3.92871 4.05768 4.07575 4.23460 4.29789 4.33210 4.36211 4.37435 4.40480 4.47023 4.63909 4.64659 4.69363 4.81285 4.84986 4.93345 5.02587 5.02640 5.09113 5.11083 5.20986 5.30358 5.33618 5.37499 5.44742 5.49865 5.57862 5.60947 5.62808 6.25264 6.27500 6.49488 6.67165 7.16622 7.32947 8.10540 8.33199 9.28553 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.035180 B = 0.001128 C = 0.001095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.714345 B =24812.152533 C =25560.867493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.264 5.264 4 C 0.108 3.892 5 C -0.252 4.252 6 C 0.076 3.924 7 C -0.244 4.244 8 C 0.571 3.429 9 O -0.579 6.579 10 N -0.711 5.711 11 C 0.121 3.879 12 C -0.119 4.119 13 C -0.114 4.114 14 C -0.104 4.104 15 C -0.117 4.117 16 C 0.147 3.853 17 N -0.751 5.751 18 C -0.253 4.253 19 H 0.076 0.924 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.977 3.023 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.276 1.276 26 C 0.213 3.787 27 N -0.519 5.519 28 C 0.310 3.690 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.243 0.757 33 H 0.163 0.837 34 H 0.415 0.585 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.373 0.627 48 H 0.252 0.748 49 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.585 37.498 0.105 41.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.189 5.189 3 N -0.076 5.076 4 C -0.090 4.090 5 C -0.263 4.263 6 C 0.047 3.953 7 C -0.252 4.252 8 C 0.359 3.641 9 O -0.460 6.460 10 N -0.363 5.363 11 C -0.003 4.003 12 C -0.157 4.157 13 C -0.152 4.152 14 C -0.142 4.142 15 C -0.155 4.155 16 C 0.021 3.979 17 N -0.394 5.394 18 C -0.384 4.384 19 H 0.094 0.906 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.805 3.195 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.202 1.202 26 C 0.042 3.958 27 N -0.233 5.233 28 C 0.070 3.930 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.115 0.885 32 H 0.259 0.741 33 H 0.180 0.820 34 H 0.253 0.747 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -19.872 38.410 0.108 43.247 hybrid contribution 1.411 -1.598 0.013 2.132 sum -18.462 36.812 0.121 41.183 Atomic orbital electron populations 1.22097 0.71645 1.05583 1.04383 1.48498 1.07541 0.99799 1.63056 1.76765 1.03520 1.07693 1.19616 1.25824 0.95386 0.92309 0.95530 1.20680 0.93689 0.95803 1.16094 1.21347 0.99799 0.90109 0.84007 1.20574 0.94943 0.94259 1.15392 1.18004 0.87611 0.82902 0.75616 1.90789 1.20905 1.82201 1.52111 1.45790 1.11467 1.04738 1.74349 1.21394 0.90136 0.86807 1.01940 1.21713 0.98515 0.91255 1.04223 1.21450 0.98018 0.93267 1.02464 1.21424 0.97035 0.92987 1.02745 1.21646 0.98916 0.93616 1.01353 1.20887 0.91120 0.88431 0.97436 1.42664 1.05022 1.02223 1.89488 1.19666 0.92804 0.84354 1.41603 0.90628 1.25624 0.95163 1.02558 1.03490 1.69815 0.99335 1.33664 1.59391 0.85171 0.76506 0.79543 0.78303 1.20221 1.21984 1.20237 1.23327 0.86028 0.99500 0.86960 1.66744 1.37819 0.98628 1.20144 1.19496 0.89576 0.88658 0.95260 0.89999 0.87946 0.88466 0.74115 0.81969 0.74666 0.92127 0.92116 0.89787 0.89795 0.91925 0.91919 0.91235 0.91229 0.92776 0.92767 0.96306 0.96306 0.79592 0.93925 0.78239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.81 11.43 127.77 1.46 2.27 16 2 N -0.40 -5.91 4.03 -366.43 -1.48 -7.39 16 3 N -0.26 -3.85 12.39 -53.08 -0.66 -4.50 16 4 C 0.11 1.13 12.30 86.94 1.07 2.20 16 5 C -0.25 -3.56 6.36 -20.24 -0.13 -3.69 16 6 C 0.08 1.03 9.76 22.92 0.22 1.26 16 7 C -0.24 -3.33 5.89 -20.00 -0.12 -3.45 16 8 C 0.57 9.64 7.77 86.74 0.67 10.31 16 9 O -0.58 -14.57 16.40 -3.95 -0.06 -14.64 16 10 N -0.71 -8.16 5.51 -466.11 -2.57 -10.72 16 11 C 0.12 1.68 5.67 86.38 0.49 2.17 16 12 C -0.12 -1.34 5.33 30.59 0.16 -1.18 16 13 C -0.11 -1.93 5.21 30.59 0.16 -1.77 16 14 C -0.10 -2.22 5.21 30.60 0.16 -2.06 16 15 C -0.12 -3.66 5.33 30.59 0.16 -3.50 16 16 C 0.15 5.97 6.26 86.38 0.54 6.51 16 17 N -0.75 -39.71 5.60 -343.47 -1.92 -41.64 16 18 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 20 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 21 N -0.97 -60.63 13.06 21.65 0.28 -60.35 16 22 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 26 C 0.21 2.30 10.69 85.26 0.91 3.21 16 27 N -0.52 -7.81 10.37 -191.96 -1.99 -9.80 16 28 C 0.31 5.08 7.96 134.18 1.07 6.14 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.24 0.32 8.06 -2.91 -0.02 0.29 16 33 H 0.16 1.89 7.72 -2.91 -0.02 1.87 16 34 H 0.42 1.92 6.51 -92.71 -0.60 1.32 16 35 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.11 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.37 20.87 7.67 -92.71 -0.71 20.16 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.20 0.56 6.39 -2.91 -0.02 0.54 16 Total: -1.00 -80.66 413.51 1.43 -79.23 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -0.34 Total: 20.53 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 8.14 Total: 0.74 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -8.33 Total: -134.40 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -0.06 Total: -14.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -80.66 1.43 -79.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179911693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.107 kcal (2) G-P(sol) polarization free energy of solvation -80.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds