Wall clock time and date at job start Wed Apr 1 2020 03:25:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47396 * 2 1
4 4 N 1.46497 * 109.47399 * 180.02562 * 3 2 1
5 5 C 1.36943 * 119.99578 * 275.30641 * 4 3 2
6 6 H 1.07996 * 119.99943 * 37.57601 * 5 4 3
7 7 C 1.38813 * 119.99695 * 217.58119 * 5 4 3
8 8 N 1.31616 * 120.00255 * 21.41793 * 7 5 4
9 9 Si 1.86796 * 119.99787 * 201.42917 * 7 5 4
10 10 H 1.48502 * 109.47691 * 89.99276 * 9 7 5
11 11 H 1.48498 * 109.47477 * 209.99850 * 9 7 5
12 12 H 1.48502 * 109.47217 * 329.99681 * 9 7 5
13 13 C 1.46501 * 120.00144 * 95.30945 * 4 3 2
14 14 C 1.53004 * 109.46562 * 269.99534 * 13 4 3
15 15 N 1.46501 * 109.46562 * 180.02562 * 14 13 4
16 16 C 1.34787 * 119.99732 * 180.02562 * 15 14 13
17 17 O 1.21715 * 119.99656 * 359.97438 * 16 15 14
18 18 C 1.46582 * 119.99991 * 180.02562 * 16 15 14
19 19 C 1.40648 * 126.53581 * 359.97438 * 18 16 15
20 20 N 1.30704 * 108.72090 * 180.02562 * 19 18 16
21 21 N 1.39899 * 109.52061 * 359.97438 * 20 19 18
22 22 C 1.36599 * 108.11167 * 0.02562 * 21 20 19
23 23 N 1.33377 * 120.79776 * 180.02562 * 22 21 20
24 24 C 1.31498 * 120.85619 * 359.97438 * 23 22 21
25 25 C 1.50700 * 119.95046 * 180.02562 * 24 23 22
26 26 C 1.39972 * 120.10858 * 359.75204 * 24 23 22
27 27 C 1.35752 * 119.34914 * 0.49700 * 26 24 23
28 28 C 1.50702 * 120.41975 * 179.78179 * 27 26 24
29 29 H 1.09000 * 109.46994 * 300.00217 * 1 2 3
30 30 H 1.09000 * 109.46944 * 59.99911 * 1 2 3
31 31 H 1.08998 * 109.47385 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.46994 * 239.99783 * 2 1 3
33 33 H 1.08999 * 109.47584 * 119.99690 * 2 1 3
34 34 H 1.09000 * 109.47226 * 59.99925 * 3 2 1
35 35 H 1.09004 * 109.46958 * 300.00432 * 3 2 1
36 36 H 0.96998 * 120.00003 * 180.02562 * 8 7 5
37 37 H 1.09002 * 109.46905 * 150.00200 * 13 4 3
38 38 H 1.08996 * 109.47035 * 29.99793 * 13 4 3
39 39 H 1.09002 * 109.46967 * 60.00703 * 14 13 4
40 40 H 1.08996 * 109.47657 * 299.99878 * 14 13 4
41 41 H 0.96997 * 120.00448 * 0.02562 * 15 14 13
42 42 H 1.07996 * 125.63837 * 0.02562 * 19 18 16
43 43 H 1.08998 * 109.47406 * 89.99320 * 25 24 23
44 44 H 1.08992 * 109.47373 * 209.99961 * 25 24 23
45 45 H 1.09007 * 109.47044 * 329.99891 * 25 24 23
46 46 H 1.07992 * 120.32470 * 180.26170 * 26 24 23
47 47 H 1.08998 * 109.47028 * 269.72351 * 28 27 26
48 48 H 1.08999 * 109.47118 * 149.72692 * 28 27 26
49 49 H 1.08997 * 109.47162 * 29.72274 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.1901 1.3326 1.1800
6 1 3.8185 0.6871 1.9620
7 6 5.3623 2.0511 1.3716
8 7 5.6025 3.1238 0.6478
9 14 6.5989 1.4954 2.6567
10 1 7.5686 0.5566 2.0373
11 1 7.3244 2.6766 3.1890
12 1 5.8867 0.8109 3.7656
13 6 4.2370 1.5601 -1.2642
14 6 4.4918 0.1646 -1.8376
15 7 5.2244 0.2822 -3.1008
16 6 5.5608 -0.8260 -3.7904
17 8 5.2563 -1.9243 -3.3633
18 6 6.2942 -0.7085 -5.0541
19 6 6.7135 0.4839 -5.6711
20 7 7.3355 0.1855 -6.7812
21 7 7.3561 -1.2035 -6.9468
22 6 6.7131 -1.7677 -5.8818
23 7 6.5862 -3.0918 -5.7839
24 6 7.0762 -3.8865 -6.7099
25 6 6.9206 -5.3798 -6.5790
26 6 7.7371 -3.3476 -7.8199
27 6 7.8744 -2.0010 -7.9233
28 6 8.5859 -1.3952 -9.1056
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3634 -1.0276 0.0005
32 1 1.8933 -0.5139 -0.8900
33 1 1.8934 -0.5138 0.8900
34 1 1.6767 1.9563 0.8900
35 1 1.6766 1.9563 -0.8900
36 1 6.4218 3.6256 0.7815
37 1 5.1895 2.0596 -1.0871
38 1 3.6477 2.1420 -1.9727
39 1 3.5393 -0.3349 -2.0147
40 1 5.0812 -0.4174 -1.1291
41 1 5.4673 1.1574 -3.4410
42 1 6.5487 1.4810 -5.2905
43 1 5.9933 -5.6920 -7.0593
44 1 7.7636 -5.8764 -7.0593
45 1 6.8923 -5.6510 -5.5236
46 1 8.1372 -3.9969 -8.5845
47 1 9.6475 -1.2963 -8.8792
48 1 8.1665 -0.4117 -9.3172
49 1 8.4585 -2.0394 -9.9756
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266567064.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:25:11
Heat of formation + Delta-G solvation = 88.191561 kcal
Electronic energy + Delta-G solvation = -29801.250179 eV
Core-core repulsion = 25765.831902 eV
Total energy + Delta-G solvation = -4035.418277 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.191 amu
Computer time = 1.10 seconds
Orbital eigenvalues (eV)
-42.66924 -39.10681 -38.23686 -36.36833 -35.31349 -34.02238 -32.82400 -32.48247
-30.95047 -30.44512 -28.98434 -28.13899 -27.71097 -25.50567 -24.22184 -23.28397
-22.54963 -21.92196 -20.80138 -20.17792 -19.60456 -18.60747 -17.42104 -16.87497
-16.58141 -16.30944 -15.43783 -15.01708 -14.91690 -14.51847 -14.33374 -14.21409
-14.10880 -13.89415 -13.79244 -13.63000 -13.39175 -13.27147 -12.89493 -12.75205
-12.70328 -12.54295 -12.43909 -12.06129 -11.66070 -11.51537 -11.42467 -11.12426
-11.00849 -10.87385 -10.70471 -10.35631 -10.28471 -10.02383 -9.97493 -9.77905
-9.73091 -9.64773 -9.32219 -8.48438 -8.35664 -7.99720 -6.56382 -5.78040
-3.36783 0.16045 0.54083 1.68210 2.07768 2.96644 3.39961 3.47246
3.48458 3.49578 3.54273 3.79151 3.88908 4.02658 4.43097 4.51916
4.65750 4.75110 4.82400 4.87514 4.94260 5.07768 5.19334 5.21132
5.32796 5.34009 5.50523 5.54960 5.63044 5.73594 5.82918 5.84397
6.03107 6.10989 6.20798 6.24075 6.34975 6.36857 6.50542 6.62904
6.69638 6.74714 7.04250 7.06391 7.11312 7.15720 7.25826 7.48033
7.63147 7.85676 8.16089 8.53736 8.87092 9.20401 9.82297 10.40211
11.21711
Molecular weight = 345.19amu
Principal moments of inertia in cm(-1)
A = 0.012027 B = 0.002548 C = 0.002382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2327.565690 B =10986.581552 C =11754.259400
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.146 4.146
3 C 0.148 3.852
4 N -0.580 5.580
5 C -0.259 4.259
6 H 0.061 0.939
7 C 0.014 3.986
8 N -0.887 5.887
9 Si 0.896 3.104
10 H -0.285 1.285
11 H -0.291 1.291
12 H -0.277 1.277
13 C 0.138 3.862
14 C 0.102 3.898
15 N -0.720 5.720
16 C 0.588 3.412
17 O -0.537 6.537
18 C -0.282 4.282
19 C 0.129 3.871
20 N -0.314 5.314
21 N -0.311 5.311
22 C 0.324 3.676
23 N -0.446 5.446
24 C 0.208 3.792
25 C -0.108 4.108
26 C -0.228 4.228
27 C 0.197 3.803
28 C -0.118 4.118
29 H 0.048 0.952
30 H 0.046 0.954
31 H 0.042 0.958
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.045 0.955
35 H 0.034 0.966
36 H 0.254 0.746
37 H 0.098 0.902
38 H 0.028 0.972
39 H 0.051 0.949
40 H 0.063 0.937
41 H 0.392 0.608
42 H 0.207 0.793
43 H 0.091 0.909
44 H 0.085 0.915
45 H 0.089 0.911
46 H 0.168 0.832
47 H 0.094 0.906
48 H 0.090 0.910
49 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.569 -10.340 -22.115 24.837
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.186 4.186
3 C 0.022 3.978
4 N -0.300 5.300
5 C -0.388 4.388
6 H 0.079 0.921
7 C -0.187 4.187
8 N -0.530 5.530
9 Si 0.725 3.275
10 H -0.212 1.212
11 H -0.218 1.218
12 H -0.202 1.202
13 C 0.010 3.990
14 C -0.023 4.023
15 N -0.371 5.371
16 C 0.374 3.626
17 O -0.414 6.414
18 C -0.298 4.298
19 C -0.052 4.052
20 N -0.136 5.136
21 N -0.081 5.081
22 C 0.092 3.908
23 N -0.158 5.158
24 C 0.046 3.954
25 C -0.165 4.165
26 C -0.252 4.252
27 C 0.080 3.920
28 C -0.175 4.175
29 H 0.067 0.933
30 H 0.065 0.935
31 H 0.062 0.938
32 H 0.072 0.928
33 H 0.076 0.924
34 H 0.063 0.937
35 H 0.052 0.948
36 H 0.064 0.936
37 H 0.116 0.884
38 H 0.047 0.953
39 H 0.069 0.931
40 H 0.081 0.919
41 H 0.226 0.774
42 H 0.223 0.777
43 H 0.110 0.890
44 H 0.103 0.897
45 H 0.108 0.892
46 H 0.185 0.815
47 H 0.112 0.888
48 H 0.109 0.891
49 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges 4.579 -10.539 -21.910 24.740
hybrid contribution 0.887 0.166 0.464 1.014
sum 5.465 -10.373 -21.446 24.442
Atomic orbital electron populations
1.21719 0.97409 1.00363 1.00935 1.22194 0.93744 1.00991 1.01657
1.20926 0.85084 0.92948 0.98841 1.43607 0.99423 1.84830 1.02117
1.19028 1.05611 1.20226 0.93957 0.92093 1.25165 1.00802 0.94562
0.98140 1.69993 1.25569 1.14813 1.42585 0.86401 0.81725 0.77847
0.81493 1.21229 1.21770 1.20188 1.21063 1.00245 0.91334 0.86340
1.22390 0.94775 1.02483 0.82626 1.45851 1.58696 1.07891 1.24641
1.16782 0.78851 0.84760 0.82234 1.90815 1.55060 1.26173 1.69370
1.19634 1.18317 0.89791 1.02108 1.24207 0.91189 0.99534 0.90280
1.77502 1.28710 0.85576 1.21839 1.47010 1.37124 1.07586 1.16391
1.20377 0.93150 0.89753 0.87478 1.68171 1.20256 0.99974 1.27410
1.22096 0.87917 0.97772 0.87622 1.20841 1.03558 0.86813 1.05277
1.21561 1.07918 0.92790 1.02959 1.20793 0.92283 0.89501 0.89449
1.21001 1.00704 1.02897 0.92896 0.93257 0.93494 0.93841 0.92825
0.92373 0.93656 0.94775 0.93586 0.88417 0.95345 0.93091 0.91871
0.77447 0.77701 0.89043 0.89658 0.89186 0.81493 0.88762 0.89137
0.88666
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16
2 C -0.15 -2.77 6.23 -26.73 -0.17 -2.94 16
3 C 0.15 3.16 5.72 -4.04 -0.02 3.13 16
4 N -0.58 -14.30 2.43 -173.24 -0.42 -14.72 16
5 C -0.26 -7.03 9.45 -15.06 -0.14 -7.18 16
6 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16
7 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16
8 N -0.89 -24.97 11.47 55.49 0.64 -24.33 16
9 Si 0.90 21.83 29.60 -169.99 -5.03 16.79 16
10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
13 C 0.14 3.12 5.45 -4.04 -0.02 3.10 16
14 C 0.10 2.19 6.00 -4.04 -0.02 2.17 16
15 N -0.72 -13.18 5.55 -61.64 -0.34 -13.52 16
16 C 0.59 11.58 7.78 -12.89 -0.10 11.48 16
17 O -0.54 -12.68 16.74 5.18 0.09 -12.59 16
18 C -0.28 -4.73 6.17 -104.66 -0.65 -5.37 16
19 C 0.13 1.71 11.44 -17.12 -0.20 1.52 16
20 N -0.31 -4.21 12.39 30.77 0.38 -3.83 16
21 N -0.31 -4.13 3.86 -8.26 -0.03 -4.16 16
22 C 0.32 5.25 7.74 -155.84 -1.21 4.05 16
23 N -0.45 -6.96 10.18 -8.25 -0.08 -7.04 16
24 C 0.21 2.16 6.83 -82.09 -0.56 1.60 16
25 C -0.11 -0.70 10.19 36.01 0.37 -0.34 16
26 C -0.23 -1.71 9.38 -39.82 -0.37 -2.08 16
27 C 0.20 1.81 6.85 -81.49 -0.56 1.25 16
28 C -0.12 -0.61 10.09 36.01 0.36 -0.25 16
29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.05 1.06 6.64 -51.93 -0.34 0.71 16
33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16
34 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16
35 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16
36 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16
37 H 0.10 2.47 5.52 -51.93 -0.29 2.19 16
38 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16
39 H 0.05 1.12 6.64 -51.93 -0.34 0.77 16
40 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16
41 H 0.39 5.93 7.39 -40.82 -0.30 5.63 16
42 H 0.21 1.93 7.46 -52.49 -0.39 1.54 16
43 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16
44 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16
45 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
46 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16
47 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
48 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16
49 H 0.09 0.21 8.08 -51.93 -0.42 -0.21 16
LS Contribution 408.85 15.07 6.16 6.16
Total: -1.00 -36.57 408.85 -9.17 -45.75
By element:
Atomic # 1 Polarization: 10.47 SS G_CDS: -7.52 Total: 2.95 kcal
Atomic # 6 Polarization: 11.54 SS G_CDS: -3.01 Total: 8.53 kcal
Atomic # 7 Polarization: -67.74 SS G_CDS: 0.14 Total: -67.60 kcal
Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.59 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.79 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -36.57 -9.17 -45.75 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266567064.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 133.937 kcal
(2) G-P(sol) polarization free energy of solvation -36.573 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.364 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds