Wall clock time and date at job start Wed Apr 1 2020 03:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 N 1.46501 * 109.47450 * 120.00437 * 2 1 3 5 5 C 1.36933 * 119.99951 * 301.90117 * 4 2 1 6 6 H 1.08004 * 120.00036 * 324.85566 * 5 4 2 7 7 C 1.38817 * 120.00177 * 144.85666 * 5 4 2 8 8 N 1.31617 * 119.99942 * 157.16745 * 7 5 4 9 9 Si 1.86798 * 119.99824 * 337.16663 * 7 5 4 10 10 H 1.48496 * 109.47005 * 95.35486 * 9 7 5 11 11 H 1.48500 * 109.47004 * 215.35339 * 9 7 5 12 12 H 1.48495 * 109.46990 * 335.35179 * 9 7 5 13 13 C 1.46498 * 119.99973 * 121.89414 * 4 2 1 14 14 C 1.53007 * 109.47065 * 90.00368 * 13 4 2 15 15 C 1.52992 * 109.47195 * 179.97438 * 14 13 4 16 16 N 1.46499 * 109.47058 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00290 * 180.02562 * 16 15 14 18 18 O 1.21575 * 119.99600 * 0.27423 * 17 16 15 19 19 C 1.47715 * 120.00286 * 179.97438 * 17 16 15 20 20 C 1.40261 * 119.86229 * 359.97438 * 19 17 16 21 21 C 1.36264 * 120.45244 * 179.97438 * 20 19 17 22 22 C 1.39315 * 120.14751 * 0.02611 * 21 20 19 23 23 C 1.40709 * 120.19972 * 359.97374 * 22 21 20 24 24 C 1.38876 * 119.86488 * 179.72601 * 19 17 16 25 25 N 1.35426 * 107.58767 * 179.97438 * 23 22 21 26 26 N 1.28642 * 110.13198 * 359.97438 * 25 23 22 27 27 N 1.37269 * 133.71287 * 179.97438 * 22 21 20 28 28 C 1.46496 * 126.65989 * 0.02562 * 27 22 21 29 29 H 1.09003 * 109.46695 * 305.32124 * 1 2 3 30 30 H 1.08994 * 109.47401 * 65.32167 * 1 2 3 31 31 H 1.09001 * 109.47048 * 185.32374 * 1 2 3 32 32 H 1.09006 * 109.46949 * 240.00085 * 2 1 3 33 33 H 1.08998 * 109.46852 * 175.18578 * 3 2 1 34 34 H 1.08992 * 109.47395 * 295.19515 * 3 2 1 35 35 H 1.09002 * 109.46496 * 55.19299 * 3 2 1 36 36 H 0.97000 * 119.99931 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47690 * 330.00525 * 13 4 2 38 38 H 1.08996 * 109.47374 * 210.00230 * 13 4 2 39 39 H 1.08997 * 109.46739 * 59.99574 * 14 13 4 40 40 H 1.08996 * 109.46911 * 300.00145 * 14 13 4 41 41 H 1.08997 * 109.47599 * 60.00132 * 15 14 13 42 42 H 1.09003 * 109.47390 * 299.99518 * 15 14 13 43 43 H 0.97002 * 119.99980 * 359.97438 * 16 15 14 44 44 H 1.07999 * 119.77393 * 0.02562 * 20 19 17 45 45 H 1.07998 * 119.92276 * 180.02562 * 21 20 19 46 46 H 1.08000 * 120.21629 * 359.97438 * 24 19 17 47 47 H 1.08999 * 109.46986 * 89.99843 * 28 27 22 48 48 H 1.08997 * 109.47454 * 210.00738 * 28 27 22 49 49 H 1.09010 * 109.46887 * 330.00393 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6558 -0.2461 2.4395 6 1 1.5324 0.8116 2.6200 7 6 1.4469 -1.1548 3.4679 8 7 1.5443 -0.7643 4.7210 9 14 1.0274 -2.9318 3.0732 10 1 2.2674 -3.7486 3.0902 11 1 0.0772 -3.4532 4.0883 12 1 0.4040 -3.0060 1.7275 13 6 2.8946 -1.8571 1.0619 14 6 4.3543 -1.3989 1.0429 15 6 5.2694 -2.6171 0.9034 16 7 6.6671 -2.1784 0.8858 17 6 7.6568 -3.0858 0.7693 18 8 7.3894 -4.2680 0.6738 19 6 9.0660 -2.6435 0.7509 20 6 9.3709 -1.2783 0.8544 21 6 10.6667 -0.8570 0.8393 22 6 11.7018 -1.7818 0.7200 23 6 11.4151 -3.1553 0.6151 24 6 10.0838 -3.5814 0.6365 25 7 12.5946 -3.8128 0.5122 26 7 13.5718 -2.9767 0.5433 27 7 13.0695 -1.6741 0.6749 28 6 13.8525 -0.4382 0.7491 29 1 -0.3633 0.5942 0.8385 30 1 -0.3634 0.4290 -0.9337 31 1 -0.3633 -1.0232 0.0954 32 1 1.8933 -0.5139 -0.8900 33 1 3.1266 1.4437 0.0862 34 1 1.7487 1.9309 -0.9298 35 1 1.6080 1.9805 0.8438 36 1 1.3987 -1.3993 5.4396 37 1 2.6654 -2.3788 0.1328 38 1 2.7359 -2.5296 1.9049 39 1 4.5835 -0.8772 1.9720 40 1 4.5130 -0.7264 0.1999 41 1 5.0404 -3.1392 -0.0255 42 1 5.1106 -3.2893 1.7467 43 1 6.8802 -1.2348 0.9572 44 1 8.5732 -0.5562 0.9475 45 1 10.8917 0.1962 0.9199 46 1 9.8482 -4.6327 0.5613 47 1 14.0872 -0.2187 1.7906 48 1 14.7777 -0.5599 0.1859 49 1 13.2750 0.3838 0.3258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267504395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:30 Heat of formation + Delta-G solvation = 99.613046 kcal Electronic energy + Delta-G solvation = -29295.608435 eV Core-core repulsion = 25260.685431 eV Total energy + Delta-G solvation = -4034.923005 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.48879 -39.96313 -37.54949 -37.08137 -35.27745 -35.08961 -32.66162 -31.95648 -31.16775 -30.79418 -29.21176 -28.00138 -26.35245 -25.79348 -24.35058 -23.73335 -23.09439 -21.61444 -21.34597 -20.79498 -19.44919 -18.47526 -17.84041 -16.89552 -16.56721 -16.48133 -16.03339 -15.71647 -15.10976 -15.06743 -14.76623 -14.63947 -14.12471 -13.94894 -13.86022 -13.67238 -13.37672 -13.27860 -13.06468 -12.73568 -12.47599 -12.31534 -12.16616 -12.14643 -11.90633 -11.83425 -11.42492 -11.21937 -11.18657 -11.10812 -10.83358 -10.74665 -10.46326 -10.44264 -10.04988 -9.94420 -9.69323 -9.39628 -9.37133 -9.03650 -8.73830 -8.49551 -6.88087 -5.99837 -3.38668 0.03768 0.47926 1.60804 1.75764 2.60270 3.04168 3.31528 3.46921 3.48660 3.51949 3.64158 3.90188 4.13987 4.38272 4.47351 4.51817 4.53357 4.67362 4.73359 4.82028 4.85096 4.99234 5.30811 5.40332 5.45920 5.50551 5.52301 5.71347 5.76026 5.76732 5.80732 5.99280 6.00538 6.02665 6.14368 6.14674 6.19169 6.28674 6.30467 6.50109 6.53595 6.61145 6.67716 6.72844 6.87433 7.06092 7.12672 7.48203 7.55204 8.04212 8.16144 8.37821 8.98864 9.72250 10.11486 11.15875 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.002070 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.707488 B =13524.969615 C =14064.613885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.166 3.834 3 C -0.153 4.153 4 N -0.601 5.601 5 C -0.259 4.259 6 H 0.081 0.919 7 C 0.034 3.966 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.285 1.285 11 H -0.304 1.304 12 H -0.270 1.270 13 C 0.141 3.859 14 C -0.146 4.146 15 C 0.117 3.883 16 N -0.718 5.718 17 C 0.558 3.442 18 O -0.537 6.537 19 C -0.147 4.147 20 C -0.038 4.038 21 C -0.126 4.126 22 C 0.104 3.896 23 C -0.028 4.028 24 C 0.035 3.965 25 N -0.207 5.207 26 N -0.008 5.008 27 N -0.399 5.399 28 C 0.098 3.902 29 H 0.060 0.940 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.399 0.601 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.154 0.846 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.465 4.155 -10.346 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.060 3.940 3 C -0.212 4.212 4 N -0.323 5.323 5 C -0.388 4.388 6 H 0.098 0.902 7 C -0.166 4.166 8 N -0.543 5.543 9 Si 0.705 3.295 10 H -0.213 1.213 11 H -0.232 1.232 12 H -0.195 1.195 13 C 0.015 3.985 14 C -0.186 4.186 15 C -0.006 4.006 16 N -0.369 5.369 17 C 0.345 3.655 18 O -0.415 6.415 19 C -0.154 4.154 20 C -0.060 4.060 21 C -0.149 4.149 22 C -0.018 4.018 23 C -0.152 4.152 24 C 0.012 3.988 25 N -0.086 5.086 26 N 0.012 4.988 27 N -0.193 5.193 28 C -0.043 4.043 29 H 0.079 0.921 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.235 0.765 44 H 0.162 0.838 45 H 0.157 0.843 46 H 0.172 0.828 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 21.539 2.498 -10.355 24.029 hybrid contribution -0.789 0.269 0.196 0.856 sum 20.750 2.767 -10.159 23.268 Atomic orbital electron populations 1.22120 0.97664 1.01384 0.99944 1.20397 0.92507 0.92220 0.88911 1.22156 1.00628 0.98364 1.00011 1.44238 1.52376 1.33119 1.02576 1.18669 1.42582 0.93119 0.84384 0.90192 1.25404 0.98489 0.97672 0.95066 1.69864 1.50422 1.35429 0.98564 0.87004 0.77859 0.86760 0.77882 1.21339 1.23239 1.19464 1.21076 0.87964 0.90307 0.99162 1.22432 0.97139 0.96238 1.02831 1.21541 0.78544 0.98401 1.02147 1.46006 1.06869 1.10082 1.73950 1.17993 0.84612 0.85955 0.76965 1.90802 1.84208 1.16670 1.49799 1.19752 0.93677 0.93520 1.08429 1.20977 0.96200 0.94840 0.93968 1.19697 0.90020 0.98660 1.06488 1.19502 0.85062 0.96533 1.00688 1.19794 0.93862 0.89608 1.11911 1.20587 0.87200 1.01222 0.89782 1.74879 0.96687 1.24804 1.12249 1.81652 1.18194 0.83626 1.15376 1.50134 1.03665 1.08250 1.57218 1.22045 0.96730 0.81234 1.04288 0.92096 0.94507 0.93471 0.93265 0.93479 0.94413 0.92491 0.92791 0.94076 0.92750 0.90467 0.92124 0.91591 0.91325 0.76532 0.83838 0.84315 0.82802 0.89771 0.88359 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.04 37.16 0.34 -2.41 16 2 C 0.17 3.04 3.36 -67.93 -0.23 2.82 16 3 C -0.15 -2.54 9.11 37.16 0.34 -2.20 16 4 N -0.60 -13.00 2.06 -165.66 -0.34 -13.34 16 5 C -0.26 -6.69 8.74 -15.06 -0.13 -6.82 16 6 H 0.08 2.25 7.17 -52.48 -0.38 1.87 16 7 C 0.03 0.93 5.31 -17.43 -0.09 0.84 16 8 N -0.90 -26.57 13.97 55.49 0.78 -25.79 16 9 Si 0.87 21.69 24.97 -169.99 -4.24 17.45 16 10 H -0.29 -6.91 6.66 56.52 0.38 -6.54 16 11 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 C 0.14 2.80 4.49 -4.04 -0.02 2.78 16 14 C -0.15 -2.37 5.65 -26.73 -0.15 -2.52 16 15 C 0.12 1.75 5.67 -4.05 -0.02 1.73 16 16 N -0.72 -8.90 5.50 -61.29 -0.34 -9.24 16 17 C 0.56 7.60 7.76 -12.39 -0.10 7.50 16 18 O -0.54 -9.34 16.31 5.30 0.09 -9.26 16 19 C -0.15 -1.60 5.87 -105.03 -0.62 -2.21 16 20 C -0.04 -0.29 9.46 -39.53 -0.37 -0.67 16 21 C -0.13 -0.89 9.97 -39.89 -0.40 -1.29 16 22 C 0.10 0.99 6.93 -84.10 -0.58 0.41 16 23 C -0.03 -0.33 7.26 -84.76 -0.62 -0.95 16 24 C 0.04 0.41 9.64 -38.76 -0.37 0.03 16 25 N -0.21 -2.67 12.40 32.15 0.40 -2.27 16 26 N -0.01 -0.10 13.72 60.35 0.83 0.73 16 27 N -0.40 -3.44 4.11 -65.43 -0.27 -3.71 16 28 C 0.10 0.33 11.52 59.84 0.69 1.02 16 29 H 0.06 1.19 7.80 -51.93 -0.40 0.79 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.82 7.78 -51.93 -0.40 0.41 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 1.05 7.25 -51.93 -0.38 0.67 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.04 0.74 7.90 -51.93 -0.41 0.33 16 38 H 0.05 1.22 2.97 -51.93 -0.15 1.06 16 39 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.40 3.77 6.47 -40.82 -0.26 3.50 16 44 H 0.14 0.75 6.36 -52.49 -0.33 0.41 16 45 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.15 1.81 7.62 -52.49 -0.40 1.41 16 47 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 48 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 49 H 0.09 0.12 8.14 -51.92 -0.42 -0.31 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -33.99 400.98 -6.76 -40.74 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.36 Total: 0.57 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: -2.34 Total: -1.94 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 1.05 Total: -53.61 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.24 Total: 17.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.99 -6.76 -40.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267504395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.356 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds