Wall clock time and date at job start Wed Apr 1 2020 03:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47248 * 2 1 4 4 N 1.46501 * 109.47450 * 120.00437 * 2 1 3 5 5 C 1.36933 * 119.99951 * 301.90117 * 4 2 1 6 6 H 1.08004 * 120.00036 * 324.85566 * 5 4 2 7 7 C 1.38817 * 120.00177 * 144.85666 * 5 4 2 8 8 N 1.31617 * 119.99942 * 157.16745 * 7 5 4 9 9 Si 1.86798 * 119.99824 * 337.16663 * 7 5 4 10 10 H 1.48496 * 109.47005 * 95.35486 * 9 7 5 11 11 H 1.48500 * 109.47004 * 215.35339 * 9 7 5 12 12 H 1.48495 * 109.46990 * 335.35179 * 9 7 5 13 13 C 1.46498 * 119.99973 * 121.89414 * 4 2 1 14 14 C 1.53007 * 109.47065 * 90.00368 * 13 4 2 15 15 C 1.52992 * 109.47195 * 179.97438 * 14 13 4 16 16 N 1.46499 * 109.47058 * 180.02562 * 15 14 13 17 17 C 1.34779 * 120.00290 * 180.02562 * 16 15 14 18 18 O 1.21575 * 119.99600 * 0.27423 * 17 16 15 19 19 C 1.47715 * 120.00286 * 179.97438 * 17 16 15 20 20 C 1.40261 * 119.86229 * 359.97438 * 19 17 16 21 21 C 1.36264 * 120.45244 * 179.97438 * 20 19 17 22 22 C 1.39315 * 120.14751 * 0.02611 * 21 20 19 23 23 C 1.40709 * 120.19972 * 359.97374 * 22 21 20 24 24 C 1.38876 * 119.86488 * 179.72601 * 19 17 16 25 25 N 1.35426 * 107.58767 * 179.97438 * 23 22 21 26 26 N 1.28642 * 110.13198 * 359.97438 * 25 23 22 27 27 N 1.37269 * 133.71287 * 179.97438 * 22 21 20 28 28 C 1.46496 * 126.65989 * 0.02562 * 27 22 21 29 29 H 1.09003 * 109.46695 * 305.32124 * 1 2 3 30 30 H 1.08994 * 109.47401 * 65.32167 * 1 2 3 31 31 H 1.09001 * 109.47048 * 185.32374 * 1 2 3 32 32 H 1.09006 * 109.46949 * 240.00085 * 2 1 3 33 33 H 1.08998 * 109.46852 * 175.18578 * 3 2 1 34 34 H 1.08992 * 109.47395 * 295.19515 * 3 2 1 35 35 H 1.09002 * 109.46496 * 55.19299 * 3 2 1 36 36 H 0.97000 * 119.99931 * 180.02562 * 8 7 5 37 37 H 1.08997 * 109.47690 * 330.00525 * 13 4 2 38 38 H 1.08996 * 109.47374 * 210.00230 * 13 4 2 39 39 H 1.08997 * 109.46739 * 59.99574 * 14 13 4 40 40 H 1.08996 * 109.46911 * 300.00145 * 14 13 4 41 41 H 1.08997 * 109.47599 * 60.00132 * 15 14 13 42 42 H 1.09003 * 109.47390 * 299.99518 * 15 14 13 43 43 H 0.97002 * 119.99980 * 359.97438 * 16 15 14 44 44 H 1.07999 * 119.77393 * 0.02562 * 20 19 17 45 45 H 1.07998 * 119.92276 * 180.02562 * 21 20 19 46 46 H 1.08000 * 120.21629 * 359.97438 * 24 19 17 47 47 H 1.08999 * 109.46986 * 89.99843 * 28 27 22 48 48 H 1.08997 * 109.47454 * 210.00738 * 28 27 22 49 49 H 1.09010 * 109.46887 * 330.00393 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6558 -0.2461 2.4395 6 1 1.5324 0.8116 2.6200 7 6 1.4469 -1.1548 3.4679 8 7 1.5443 -0.7643 4.7210 9 14 1.0274 -2.9318 3.0732 10 1 2.2674 -3.7486 3.0902 11 1 0.0772 -3.4532 4.0883 12 1 0.4040 -3.0060 1.7275 13 6 2.8946 -1.8571 1.0619 14 6 4.3543 -1.3989 1.0429 15 6 5.2694 -2.6171 0.9034 16 7 6.6671 -2.1784 0.8858 17 6 7.6568 -3.0858 0.7693 18 8 7.3894 -4.2680 0.6738 19 6 9.0660 -2.6435 0.7509 20 6 9.3709 -1.2783 0.8544 21 6 10.6667 -0.8570 0.8393 22 6 11.7018 -1.7818 0.7200 23 6 11.4151 -3.1553 0.6151 24 6 10.0838 -3.5814 0.6365 25 7 12.5946 -3.8128 0.5122 26 7 13.5718 -2.9767 0.5433 27 7 13.0695 -1.6741 0.6749 28 6 13.8525 -0.4382 0.7491 29 1 -0.3633 0.5942 0.8385 30 1 -0.3634 0.4290 -0.9337 31 1 -0.3633 -1.0232 0.0954 32 1 1.8933 -0.5139 -0.8900 33 1 3.1266 1.4437 0.0862 34 1 1.7487 1.9309 -0.9298 35 1 1.6080 1.9805 0.8438 36 1 1.3987 -1.3993 5.4396 37 1 2.6654 -2.3788 0.1328 38 1 2.7359 -2.5296 1.9049 39 1 4.5835 -0.8772 1.9720 40 1 4.5130 -0.7264 0.1999 41 1 5.0404 -3.1392 -0.0255 42 1 5.1106 -3.2893 1.7467 43 1 6.8802 -1.2348 0.9572 44 1 8.5732 -0.5562 0.9475 45 1 10.8917 0.1962 0.9199 46 1 9.8482 -4.6327 0.5613 47 1 14.0872 -0.2187 1.7906 48 1 14.7777 -0.5599 0.1859 49 1 13.2750 0.3838 0.3258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267504395.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:29 Heat of formation + Delta-G solvation = 75.820398 kcal Electronic energy + Delta-G solvation = -29296.640162 eV Core-core repulsion = 25260.685431 eV Total energy + Delta-G solvation = -4035.954731 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.22551 -41.00769 -38.80237 -38.24061 -36.46966 -35.77533 -34.28667 -33.58783 -31.90833 -31.75031 -30.62914 -28.49687 -27.73838 -27.23904 -25.65803 -24.63796 -24.31695 -22.69255 -22.27296 -21.79917 -21.12266 -19.39481 -18.47491 -18.37036 -17.64610 -17.28589 -17.21410 -17.07559 -16.58387 -16.39880 -15.85864 -15.44050 -15.26953 -15.03305 -14.86240 -14.72476 -14.41919 -14.18374 -14.04322 -13.98311 -13.84894 -13.52985 -13.49715 -13.29028 -13.08227 -12.86099 -12.77591 -12.60431 -12.54633 -12.29477 -12.13619 -11.97173 -11.91228 -11.74853 -11.64759 -11.36840 -11.19293 -11.12262 -10.51445 -10.24788 -10.02969 -9.45642 -8.70467 -8.11706 -5.43955 -0.70829 -0.29046 1.02319 1.05991 1.32770 1.44440 1.52378 1.67679 2.01598 2.47014 2.62042 2.91976 3.12276 3.32841 3.38649 3.46958 3.63984 3.82093 3.95437 4.11492 4.13771 4.28895 4.34590 4.37219 4.42645 4.46628 4.56818 4.63541 4.65788 4.75015 4.76117 4.80078 4.82052 4.87824 5.00288 5.05249 5.06891 5.13638 5.20299 5.24604 5.29703 5.32197 5.37814 5.49323 5.57639 5.62287 5.69579 6.04691 6.30108 6.49835 6.78018 7.09602 7.14442 7.76586 8.16211 9.08404 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016755 B = 0.002070 C = 0.001990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.707488 B =13524.969615 C =14064.613885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 C -0.144 4.144 4 N -0.611 5.611 5 C -0.224 4.224 6 H 0.050 0.950 7 C -0.022 4.022 8 N -0.951 5.951 9 Si 0.928 3.072 10 H -0.281 1.281 11 H -0.321 1.321 12 H -0.259 1.259 13 C 0.131 3.869 14 C -0.126 4.126 15 C 0.126 3.874 16 N -0.705 5.705 17 C 0.558 3.442 18 O -0.583 6.583 19 C -0.147 4.147 20 C -0.035 4.035 21 C -0.104 4.104 22 C 0.100 3.900 23 C -0.050 4.050 24 C 0.016 3.984 25 N -0.245 5.245 26 N -0.029 5.029 27 N -0.385 5.385 28 C 0.083 3.917 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.257 0.743 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.417 0.583 44 H 0.176 0.824 45 H 0.185 0.815 46 H 0.136 0.864 47 H 0.100 0.900 48 H 0.108 0.892 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.688 6.778 -12.883 26.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.051 3.949 3 C -0.203 4.203 4 N -0.334 5.334 5 C -0.354 4.354 6 H 0.068 0.932 7 C -0.218 4.218 8 N -0.597 5.597 9 Si 0.759 3.241 10 H -0.209 1.209 11 H -0.251 1.251 12 H -0.184 1.184 13 C 0.005 3.995 14 C -0.166 4.166 15 C 0.001 3.999 16 N -0.357 5.357 17 C 0.346 3.654 18 O -0.464 6.464 19 C -0.154 4.154 20 C -0.057 4.057 21 C -0.126 4.126 22 C -0.023 4.023 23 C -0.175 4.175 24 C -0.007 4.007 25 N -0.123 5.123 26 N -0.009 5.009 27 N -0.180 5.180 28 C -0.056 4.056 29 H 0.053 0.947 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.255 0.745 44 H 0.194 0.806 45 H 0.202 0.798 46 H 0.154 0.846 47 H 0.119 0.881 48 H 0.127 0.873 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 22.807 5.156 -12.950 26.729 hybrid contribution -1.103 -0.386 0.896 1.473 sum 21.703 4.770 -12.053 25.280 Atomic orbital electron populations 1.22084 0.97620 1.00234 1.00808 1.20706 0.92651 0.93171 0.88352 1.22044 1.00662 0.96973 1.00580 1.44403 1.53212 1.33588 1.02187 1.18523 1.39345 0.91649 0.85932 0.93200 1.25881 1.00084 1.00795 0.95001 1.69976 1.53830 1.36408 0.99461 0.86117 0.77268 0.83329 0.77347 1.20905 1.25098 1.18351 1.21182 0.89754 0.89387 0.99155 1.22130 0.94933 0.96652 1.02891 1.21276 0.79717 0.97417 1.01449 1.45781 1.05654 1.10933 1.73302 1.18391 0.85772 0.85335 0.75889 1.90781 1.84998 1.18689 1.51906 1.19574 0.91515 0.95051 1.09237 1.21270 0.97645 0.93548 0.93272 1.20158 0.88610 1.00248 1.03592 1.19831 0.85960 0.95964 1.00536 1.19969 0.93527 0.91126 1.12839 1.20481 0.87861 1.00828 0.91543 1.74843 0.97433 1.26045 1.13993 1.81542 1.18352 0.85019 1.15999 1.50530 1.03775 1.08576 1.55105 1.22585 0.97291 0.79794 1.05929 0.94691 0.90865 0.94934 0.90202 0.92995 0.91099 0.95230 0.93366 0.91541 0.95601 0.92542 0.89344 0.90915 0.93897 0.74487 0.80633 0.79758 0.84601 0.88126 0.87315 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.04 71.98 0.65 -4.36 16 2 C 0.16 5.22 3.36 44.99 0.15 5.37 16 3 C -0.14 -4.31 9.11 71.98 0.66 -3.65 16 4 N -0.61 -25.36 2.06 -678.02 -1.40 -26.76 16 5 C -0.22 -11.64 8.74 84.04 0.73 -10.90 16 6 H 0.05 2.88 7.17 -2.91 -0.02 2.86 16 7 C -0.02 -1.25 5.31 84.86 0.45 -0.79 16 8 N -0.95 -57.99 13.97 21.65 0.30 -57.69 16 9 Si 0.93 45.81 24.97 68.60 1.71 47.52 16 10 H -0.28 -13.50 6.66 99.48 0.66 -12.83 16 11 H -0.32 -16.58 7.11 99.48 0.71 -15.87 16 12 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 13 C 0.13 4.90 4.49 86.38 0.39 5.29 16 14 C -0.13 -3.77 5.65 30.59 0.17 -3.60 16 15 C 0.13 3.56 5.67 86.38 0.49 4.05 16 16 N -0.70 -16.01 5.50 -466.10 -2.57 -18.58 16 17 C 0.56 14.81 7.76 86.75 0.67 15.48 16 18 O -0.58 -20.76 16.31 -3.95 -0.06 -20.82 16 19 C -0.15 -3.03 5.87 -20.13 -0.12 -3.15 16 20 C -0.04 -0.42 9.46 22.30 0.21 -0.21 16 21 C -0.10 -1.01 9.97 22.07 0.22 -0.79 16 22 C 0.10 1.67 6.93 39.15 0.27 1.94 16 23 C -0.05 -1.18 7.26 39.57 0.29 -0.90 16 24 C 0.02 0.39 9.64 22.80 0.22 0.61 16 25 N -0.24 -6.54 12.40 -52.21 -0.65 -7.19 16 26 N -0.03 -0.66 13.72 37.02 0.51 -0.15 16 27 N -0.39 -5.79 4.11 -360.93 -1.48 -7.27 16 28 C 0.08 0.26 11.52 127.77 1.47 1.73 16 29 H 0.03 1.33 7.80 -2.39 -0.02 1.31 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 2.24 7.78 -2.38 -0.02 2.22 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.03 1.03 7.25 -2.39 -0.02 1.01 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.07 2.16 7.90 -2.39 -0.02 2.14 16 38 H 0.03 1.14 2.97 -2.39 -0.01 1.13 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.42 6.41 6.47 -92.71 -0.60 5.81 16 44 H 0.18 0.91 6.36 -2.91 -0.02 0.89 16 45 H 0.19 0.14 8.06 -2.91 -0.02 0.11 16 46 H 0.14 3.58 7.62 -2.91 -0.02 3.56 16 47 H 0.10 0.06 8.14 -2.39 -0.02 0.04 16 48 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 49 H 0.12 -0.34 8.14 -2.38 -0.02 -0.36 16 Total: -1.00 -79.68 400.98 3.62 -76.06 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 0.33 Total: 8.78 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 6.93 Total: 6.10 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -5.28 Total: -117.64 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.71 Total: 47.52 kcal Total: -79.68 3.62 -76.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267504395.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.878 kcal (2) G-P(sol) polarization free energy of solvation -79.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds