Wall clock time and date at job start Wed Apr 1 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 115.55004 * 2 1 4 4 C 1.53000 * 117.49997 * 214.33328 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.49592 * 4 2 1 6 6 H 1.08999 * 117.49664 * 252.51862 * 5 4 2 7 7 C 1.52999 * 117.49968 * 107.50530 * 5 4 2 8 8 N 1.46900 * 109.47626 * 116.38753 * 7 5 4 9 9 C 1.46976 * 111.00054 * 169.99516 * 8 7 5 10 10 C 1.53471 * 109.67765 * 53.57576 * 9 8 7 11 11 N 1.46291 * 108.20369 * 49.45090 * 10 9 8 12 12 C 1.35221 * 124.01724 * 343.80497 * 11 10 9 13 13 N 1.30268 * 107.62881 * 179.75903 * 12 11 10 14 14 N 1.28947 * 109.79144 * 0.13128 * 13 12 11 15 15 C 1.31970 * 109.53417 * 359.96937 * 14 13 12 16 16 C 1.47442 * 126.66556 * 179.97438 * 15 14 13 17 17 O 1.21595 * 120.00113 * 179.97438 * 16 15 14 18 18 N 1.34781 * 120.00033 * 359.95980 * 16 15 14 19 19 C 1.47065 * 136.05573 * 359.62597 * 18 16 15 20 20 C 1.53239 * 88.07983 * 207.20752 * 19 18 16 21 21 C 1.50705 * 114.32515 * 220.47081 * 20 19 18 22 22 H 1.08005 * 120.00212 * 93.75824 * 21 20 19 23 23 C 1.37882 * 119.99818 * 273.76163 * 21 20 19 24 24 N 1.31512 * 120.00107 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99693 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47423 * 59.99668 * 25 23 21 27 27 H 1.48503 * 109.46947 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47026 * 299.99496 * 25 23 21 29 29 C 1.47073 * 136.05544 * 180.02562 * 18 16 15 30 30 C 1.47369 * 110.99768 * 294.23723 * 8 7 5 31 31 H 1.08999 * 109.46945 * 154.28286 * 1 2 3 32 32 H 1.09006 * 109.47222 * 274.27610 * 1 2 3 33 33 H 1.09002 * 109.47499 * 34.27542 * 1 2 3 34 34 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 35 35 H 1.09002 * 117.49953 * 144.99738 * 4 2 1 36 36 H 1.09007 * 109.46856 * 236.39135 * 7 5 4 37 37 H 1.09004 * 109.46879 * 356.38351 * 7 5 4 38 38 H 1.09004 * 109.43623 * 173.63681 * 9 8 7 39 39 H 1.09003 * 109.44013 * 293.51224 * 9 8 7 40 40 H 1.08997 * 109.71821 * 169.12635 * 10 9 8 41 41 H 1.08999 * 109.71485 * 289.77651 * 10 9 8 42 42 H 1.08996 * 113.46593 * 321.93732 * 19 18 16 43 43 H 1.08995 * 113.46597 * 92.38220 * 19 18 16 44 44 H 1.08993 * 114.20080 * 87.72838 * 20 19 18 45 45 H 0.97003 * 119.99785 * 180.02562 * 24 23 21 46 46 H 1.09004 * 113.46353 * 267.61660 * 29 18 16 47 47 H 1.08991 * 113.46861 * 38.05530 * 29 18 16 48 48 H 1.08994 * 109.74729 * 45.57044 * 30 8 7 49 49 H 1.08998 * 109.74104 * 166.28803 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2371 -1.1218 0.7646 6 1 3.1724 -0.8760 1.2676 7 6 1.3603 -2.1578 1.4707 8 7 2.2102 -3.0749 2.2418 9 6 1.3999 -3.9323 3.1185 10 6 0.3194 -4.6424 2.2917 11 7 0.9610 -5.2476 1.1246 12 6 2.1976 -4.9201 0.6864 13 7 2.4511 -5.6508 -0.3618 14 7 1.4457 -6.4183 -0.6125 15 6 0.4958 -6.2064 0.2787 16 6 -0.8146 -6.8790 0.3457 17 8 -1.6030 -6.5883 1.2245 18 7 -1.1386 -7.8159 -0.5675 19 6 -0.4902 -8.4192 -1.7415 20 6 -1.8873 -8.6876 -2.3109 21 6 -2.0356 -10.0265 -2.9866 22 1 -2.4051 -10.8747 -2.4293 23 6 -1.6996 -10.1686 -4.3163 24 7 -1.2501 -9.1357 -4.9950 25 14 -1.8841 -11.8280 -5.1539 26 1 -3.3044 -12.2571 -5.0950 27 1 -1.4585 -11.7166 -6.5723 28 1 -1.0351 -12.8298 -4.4603 29 6 -2.2991 -8.6796 -0.8325 30 6 3.0642 -3.8792 1.3499 31 1 -0.3633 -0.9259 -0.4459 32 1 -0.3634 0.0766 1.0249 33 1 -0.3634 0.8492 -0.5787 34 1 1.6112 -1.8582 -1.2687 35 1 3.1713 -0.8746 -1.2689 36 1 0.6689 -1.6505 2.1437 37 1 0.7961 -2.7226 0.7285 38 1 2.0412 -4.6757 3.5921 39 1 0.9258 -3.3211 3.8864 40 1 -0.1544 -5.4175 2.8940 41 1 -0.4289 -3.9197 1.9665 42 1 0.0880 -7.7080 -2.3313 43 1 0.0664 -9.3275 -1.5110 44 1 -2.2983 -7.8632 -2.8935 45 1 -1.0140 -9.2357 -5.9305 46 1 -2.2294 -9.6581 -0.3571 47 1 -3.2555 -8.1894 -0.6509 48 1 3.5136 -3.2370 0.5926 49 1 3.8465 -4.3674 1.9310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277143251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:06 Heat of formation + Delta-G solvation = 122.432185 kcal Electronic energy + Delta-G solvation = -30886.927664 eV Core-core repulsion = 26852.994172 eV Total energy + Delta-G solvation = -4033.933492 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.36280 -39.64561 -39.35844 -37.59859 -37.24781 -34.25905 -32.72358 -31.68711 -30.40978 -29.42234 -28.71866 -27.79005 -25.59539 -25.18887 -24.94482 -23.57365 -22.94090 -21.87288 -20.75461 -20.35207 -19.12688 -18.78294 -17.21911 -16.99495 -16.67622 -16.57769 -16.32851 -15.89278 -15.33312 -15.03862 -14.93605 -14.69540 -14.47543 -14.14446 -13.86290 -13.50874 -13.46865 -13.21374 -12.88963 -12.67440 -12.46490 -12.27015 -12.22108 -12.02866 -11.76954 -11.58465 -11.51897 -11.48212 -11.33331 -10.92940 -10.89932 -10.54670 -10.32135 -10.28095 -10.21030 -10.11556 -9.97017 -9.31160 -9.23594 -9.12363 -9.08680 -8.56712 -8.02534 -6.15267 -4.22006 1.25459 2.06375 2.52172 3.15990 3.27779 3.32634 3.33791 3.37621 3.46984 3.49171 3.91041 4.05900 4.27292 4.34983 4.39241 4.47926 4.52057 4.60129 4.69873 4.91598 4.93944 4.99675 5.05217 5.14087 5.14654 5.21811 5.24691 5.29908 5.39638 5.47658 5.53427 5.59868 5.63641 5.72452 5.88687 5.90743 5.98609 6.01279 6.06283 6.18025 6.30744 6.33955 6.38557 6.59022 6.64049 6.68895 6.96420 7.53952 7.81067 8.15384 8.16927 8.38909 8.65403 8.81082 9.44697 10.94335 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.002612 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.373662 B =10717.403131 C =11268.911248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.148 4.148 3 H 0.105 0.895 4 C -0.177 4.177 5 C -0.147 4.147 6 H 0.116 0.884 7 C 0.077 3.923 8 N -0.524 5.524 9 C 0.039 3.961 10 C 0.070 3.930 11 N -0.443 5.443 12 C 0.147 3.853 13 N -0.281 5.281 14 N -0.235 5.235 15 C 0.149 3.851 16 C 0.618 3.382 17 O -0.563 6.563 18 N -0.613 5.613 19 C 0.105 3.895 20 C 0.035 3.965 21 C -0.520 4.520 22 H 0.064 0.936 23 C 0.070 3.930 24 N -0.881 5.881 25 Si 0.897 3.103 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.275 1.275 29 C 0.105 3.895 30 C 0.141 3.859 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.266 0.734 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.117 0.883 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.181 16.894 15.076 23.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.166 4.166 3 H 0.124 0.876 4 C -0.214 4.214 5 C -0.166 4.166 6 H 0.134 0.866 7 C -0.050 4.050 8 N -0.245 5.245 9 C -0.090 4.090 10 C -0.054 4.054 11 N -0.134 5.134 12 C -0.121 4.121 13 N -0.124 5.124 14 N -0.081 5.081 15 C -0.118 4.118 16 C 0.403 3.597 17 O -0.443 6.443 18 N -0.344 5.344 19 C -0.017 4.017 20 C 0.015 3.985 21 C -0.558 4.558 22 H 0.082 0.918 23 C -0.134 4.134 24 N -0.518 5.518 25 Si 0.724 3.276 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.200 1.200 29 C -0.016 4.016 30 C 0.011 3.989 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.135 0.865 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.846 16.955 14.653 23.743 hybrid contribution -1.141 -0.873 0.025 1.437 sum 6.705 16.082 14.678 22.782 Atomic orbital electron populations 1.21371 0.92925 1.02217 1.01797 1.22373 0.95385 0.94402 1.04462 0.87648 1.23248 1.02804 1.01545 0.93809 1.22332 1.01445 0.99175 0.93623 0.86617 1.21813 0.94164 0.92870 0.96188 1.62445 1.23207 1.17974 1.20920 1.22739 0.94197 0.96467 0.95569 1.22834 0.97269 0.99691 0.85616 1.45865 1.14351 1.29427 1.23772 1.25793 0.87157 1.02559 0.96606 1.74268 1.19761 1.06169 1.12220 1.75114 0.96793 1.17201 1.18967 1.24323 0.99313 0.95624 0.92534 1.15773 0.82344 0.80401 0.81211 1.90749 1.50510 1.66902 1.36090 1.49765 1.22766 1.34426 1.27452 1.23748 1.00688 0.95840 0.81391 1.20330 0.90552 0.98991 0.88596 1.20803 1.45420 0.94241 0.95368 0.91786 1.25030 0.94317 0.96864 0.97236 1.69947 1.42379 1.29806 1.09622 0.86581 0.78656 0.83879 0.78463 1.20078 1.21194 1.20028 1.23529 0.87638 0.91731 0.98666 1.21073 0.93141 0.89745 0.94983 0.92585 0.92168 0.91992 0.88913 0.88495 0.89656 0.94052 0.88902 0.87239 0.86991 0.88805 0.90632 0.90378 0.91269 0.92474 0.90130 0.91966 0.86532 0.87133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.97 9.20 37.16 0.34 -0.63 16 2 C -0.15 -1.12 6.41 -90.59 -0.58 -1.70 16 3 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.18 -1.56 9.68 -26.73 -0.26 -1.81 16 5 C -0.15 -1.14 4.67 -90.58 -0.42 -1.56 16 6 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 7 C 0.08 0.64 3.40 -3.82 -0.01 0.63 16 8 N -0.52 -4.18 4.96 -235.22 -1.17 -5.35 16 9 C 0.04 0.28 5.95 -3.54 -0.02 0.26 16 10 C 0.07 0.76 5.49 -3.91 -0.02 0.74 16 11 N -0.44 -6.56 2.89 -111.33 -0.32 -6.88 16 12 C 0.15 2.08 7.09 -155.39 -1.10 0.98 16 13 N -0.28 -5.05 12.21 32.74 0.40 -4.65 16 14 N -0.23 -4.76 10.84 32.32 0.35 -4.41 16 15 C 0.15 2.82 7.91 -154.77 -1.22 1.60 16 16 C 0.62 12.71 8.07 -12.51 -0.10 12.61 16 17 O -0.56 -11.85 16.37 5.28 0.09 -11.76 16 18 N -0.61 -13.05 3.69 -186.65 -0.69 -13.74 16 19 C 0.11 2.38 7.35 -8.63 -0.06 2.32 16 20 C 0.03 0.82 3.77 -91.40 -0.34 0.48 16 21 C -0.52 -13.31 8.83 -34.44 -0.30 -13.61 16 22 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 23 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 24 N -0.88 -24.50 13.26 55.43 0.74 -23.77 16 25 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 29 C 0.11 2.18 8.19 -8.50 -0.07 2.11 16 30 C 0.14 1.32 6.08 -4.66 -0.03 1.30 16 31 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 32 H 0.06 0.41 7.84 -51.93 -0.41 0.00 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.01 7.94 -51.93 -0.41 0.60 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.62 7.71 -51.93 -0.40 0.22 16 37 H 0.04 0.45 5.99 -51.93 -0.31 0.14 16 38 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 1.28 7.53 -51.93 -0.39 0.89 16 41 H 0.09 1.00 7.22 -51.93 -0.38 0.63 16 42 H 0.08 1.82 7.51 -51.93 -0.39 1.43 16 43 H 0.08 1.76 8.10 -51.93 -0.42 1.34 16 44 H 0.07 1.79 8.11 -51.93 -0.42 1.37 16 45 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 47 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.12 1.04 6.82 -51.93 -0.35 0.68 16 49 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 394.57 15.07 5.95 5.95 Total: -1.00 -30.81 394.57 -11.63 -42.44 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.64 Total: 1.47 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: -4.31 Total: 5.43 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -0.69 Total: -58.80 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.81 -11.63 -42.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277143251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.874 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds