Wall clock time and date at job start Wed Apr 1 2020 03:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 115.55004 * 2 1 4 4 C 1.53000 * 117.49997 * 214.33328 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.49592 * 4 2 1 6 6 H 1.08999 * 117.49664 * 252.51862 * 5 4 2 7 7 C 1.52999 * 117.49968 * 107.50530 * 5 4 2 8 8 N 1.46900 * 109.47626 * 116.38753 * 7 5 4 9 9 C 1.46976 * 111.00054 * 169.99516 * 8 7 5 10 10 C 1.53471 * 109.67765 * 53.57576 * 9 8 7 11 11 N 1.46291 * 108.20369 * 49.45090 * 10 9 8 12 12 C 1.35221 * 124.01724 * 343.80497 * 11 10 9 13 13 N 1.30268 * 107.62881 * 179.75903 * 12 11 10 14 14 N 1.28947 * 109.79144 * 0.13128 * 13 12 11 15 15 C 1.31970 * 109.53417 * 359.96937 * 14 13 12 16 16 C 1.47442 * 126.66556 * 179.97438 * 15 14 13 17 17 O 1.21595 * 120.00113 * 179.97438 * 16 15 14 18 18 N 1.34781 * 120.00033 * 359.95980 * 16 15 14 19 19 C 1.47065 * 136.05573 * 359.62597 * 18 16 15 20 20 C 1.53239 * 88.07983 * 207.20752 * 19 18 16 21 21 C 1.50705 * 114.32515 * 220.47081 * 20 19 18 22 22 H 1.08005 * 120.00212 * 93.75824 * 21 20 19 23 23 C 1.37882 * 119.99818 * 273.76163 * 21 20 19 24 24 N 1.31512 * 120.00107 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99693 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47423 * 59.99668 * 25 23 21 27 27 H 1.48503 * 109.46947 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.47026 * 299.99496 * 25 23 21 29 29 C 1.47073 * 136.05544 * 180.02562 * 18 16 15 30 30 C 1.47369 * 110.99768 * 294.23723 * 8 7 5 31 31 H 1.08999 * 109.46945 * 154.28286 * 1 2 3 32 32 H 1.09006 * 109.47222 * 274.27610 * 1 2 3 33 33 H 1.09002 * 109.47499 * 34.27542 * 1 2 3 34 34 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 35 35 H 1.09002 * 117.49953 * 144.99738 * 4 2 1 36 36 H 1.09007 * 109.46856 * 236.39135 * 7 5 4 37 37 H 1.09004 * 109.46879 * 356.38351 * 7 5 4 38 38 H 1.09004 * 109.43623 * 173.63681 * 9 8 7 39 39 H 1.09003 * 109.44013 * 293.51224 * 9 8 7 40 40 H 1.08997 * 109.71821 * 169.12635 * 10 9 8 41 41 H 1.08999 * 109.71485 * 289.77651 * 10 9 8 42 42 H 1.08996 * 113.46593 * 321.93732 * 19 18 16 43 43 H 1.08995 * 113.46597 * 92.38220 * 19 18 16 44 44 H 1.08993 * 114.20080 * 87.72838 * 20 19 18 45 45 H 0.97003 * 119.99785 * 180.02562 * 24 23 21 46 46 H 1.09004 * 113.46353 * 267.61660 * 29 18 16 47 47 H 1.08991 * 113.46861 * 38.05530 * 29 18 16 48 48 H 1.08994 * 109.74729 * 45.57044 * 30 8 7 49 49 H 1.08998 * 109.74104 * 166.28803 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2371 -1.1218 0.7646 6 1 3.1724 -0.8760 1.2676 7 6 1.3603 -2.1578 1.4707 8 7 2.2102 -3.0749 2.2418 9 6 1.3999 -3.9323 3.1185 10 6 0.3194 -4.6424 2.2917 11 7 0.9610 -5.2476 1.1246 12 6 2.1976 -4.9201 0.6864 13 7 2.4511 -5.6508 -0.3618 14 7 1.4457 -6.4183 -0.6125 15 6 0.4958 -6.2064 0.2787 16 6 -0.8146 -6.8790 0.3457 17 8 -1.6030 -6.5883 1.2245 18 7 -1.1386 -7.8159 -0.5675 19 6 -0.4902 -8.4192 -1.7415 20 6 -1.8873 -8.6876 -2.3109 21 6 -2.0356 -10.0265 -2.9866 22 1 -2.4051 -10.8747 -2.4293 23 6 -1.6996 -10.1686 -4.3163 24 7 -1.2501 -9.1357 -4.9950 25 14 -1.8841 -11.8280 -5.1539 26 1 -3.3044 -12.2571 -5.0950 27 1 -1.4585 -11.7166 -6.5723 28 1 -1.0351 -12.8298 -4.4603 29 6 -2.2991 -8.6796 -0.8325 30 6 3.0642 -3.8792 1.3499 31 1 -0.3633 -0.9259 -0.4459 32 1 -0.3634 0.0766 1.0249 33 1 -0.3634 0.8492 -0.5787 34 1 1.6112 -1.8582 -1.2687 35 1 3.1713 -0.8746 -1.2689 36 1 0.6689 -1.6505 2.1437 37 1 0.7961 -2.7226 0.7285 38 1 2.0412 -4.6757 3.5921 39 1 0.9258 -3.3211 3.8864 40 1 -0.1544 -5.4175 2.8940 41 1 -0.4289 -3.9197 1.9665 42 1 0.0880 -7.7080 -2.3313 43 1 0.0664 -9.3275 -1.5110 44 1 -2.2983 -7.8632 -2.8935 45 1 -1.0140 -9.2357 -5.9305 46 1 -2.2294 -9.6581 -0.3571 47 1 -3.2555 -8.1894 -0.6509 48 1 3.5136 -3.2370 0.5926 49 1 3.8465 -4.3674 1.9310 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277143251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:06 Heat of formation + Delta-G solvation = 103.845375 kcal Electronic energy + Delta-G solvation = -30887.733649 eV Core-core repulsion = 26852.994172 eV Total energy + Delta-G solvation = -4034.739477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.61691 -41.21421 -40.28627 -38.99339 -38.31728 -35.33149 -34.69592 -32.93366 -31.57738 -30.73787 -29.57064 -28.67401 -27.32020 -26.79748 -26.07476 -25.01706 -23.99916 -22.60898 -22.31668 -21.26553 -20.35439 -19.91352 -18.90432 -18.45327 -17.99288 -17.82313 -17.27346 -17.10320 -16.63951 -16.49828 -16.20379 -15.86193 -15.62650 -15.18488 -15.08522 -14.62885 -14.41282 -14.22068 -14.10932 -14.03976 -13.61964 -13.35019 -13.26724 -13.25377 -12.98219 -12.92167 -12.76980 -12.67060 -12.52884 -12.45385 -12.22832 -12.13468 -11.89327 -11.63993 -11.41583 -11.12433 -11.04684 -10.85697 -10.75540 -10.56852 -10.55198 -9.88134 -9.76678 -8.16942 -6.29604 -0.12480 0.84349 1.19661 1.48824 1.49792 1.57582 1.83892 1.92962 2.45455 2.50010 2.77905 2.82586 3.02753 3.13271 3.27908 3.57502 3.68505 3.72946 3.82363 3.92194 3.97310 4.15190 4.18240 4.25381 4.26840 4.38766 4.39223 4.43242 4.50293 4.55115 4.56935 4.62399 4.64452 4.72837 4.75227 4.77254 4.82616 4.87767 4.89154 4.93817 5.06287 5.11930 5.24339 5.37066 5.47489 5.54670 5.60138 5.72208 5.78875 6.18612 6.45246 6.73028 6.79750 7.28391 7.40782 8.93090 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.015420 B = 0.002612 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.373662 B =10717.403131 C =11268.911248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.140 4.140 3 H 0.123 0.877 4 C -0.194 4.194 5 C -0.136 4.136 6 H 0.132 0.868 7 C 0.078 3.922 8 N -0.508 5.508 9 C 0.046 3.954 10 C 0.062 3.938 11 N -0.437 5.437 12 C 0.173 3.827 13 N -0.318 5.318 14 N -0.267 5.267 15 C 0.122 3.878 16 C 0.620 3.380 17 O -0.568 6.568 18 N -0.619 5.619 19 C 0.122 3.878 20 C 0.025 3.975 21 C -0.528 4.528 22 H 0.074 0.926 23 C 0.018 3.982 24 N -0.920 5.920 25 Si 0.962 3.038 26 H -0.266 1.266 27 H -0.289 1.289 28 H -0.268 1.268 29 C 0.117 3.883 30 C 0.142 3.858 31 H 0.033 0.967 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.010 0.990 38 H 0.105 0.895 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.264 0.736 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.125 0.875 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.951 17.865 17.771 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.159 4.159 3 H 0.141 0.859 4 C -0.231 4.231 5 C -0.155 4.155 6 H 0.150 0.850 7 C -0.049 4.049 8 N -0.228 5.228 9 C -0.082 4.082 10 C -0.060 4.060 11 N -0.127 5.127 12 C -0.097 4.097 13 N -0.162 5.162 14 N -0.114 5.114 15 C -0.145 4.145 16 C 0.406 3.594 17 O -0.449 6.449 18 N -0.351 5.351 19 C 0.000 4.000 20 C 0.005 3.995 21 C -0.566 4.566 22 H 0.092 0.908 23 C -0.182 4.182 24 N -0.558 5.558 25 Si 0.787 3.213 26 H -0.191 1.191 27 H -0.215 1.215 28 H -0.192 1.192 29 C -0.003 4.003 30 C 0.011 3.989 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.029 0.971 38 H 0.124 0.876 39 H 0.162 0.838 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.091 0.909 48 H 0.142 0.858 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.596 17.940 17.393 26.424 hybrid contribution -1.380 -1.040 -0.746 1.882 sum 7.216 16.899 16.647 24.795 Atomic orbital electron populations 1.21384 0.93229 1.01313 1.02483 1.22463 0.95192 0.94847 1.03359 0.85939 1.23173 1.03024 1.02057 0.94851 1.22365 1.01859 0.98777 0.92464 0.85020 1.21828 0.94362 0.92832 0.95901 1.62537 1.22957 1.17339 1.20006 1.22932 0.93322 0.96816 0.95125 1.23219 0.98742 0.99562 0.84522 1.46099 1.14423 1.28228 1.23973 1.26728 0.86844 1.01270 0.94815 1.74177 1.19879 1.07613 1.14482 1.75013 0.97756 1.18537 1.20104 1.23962 0.98807 0.97628 0.94134 1.15912 0.82924 0.79858 0.80721 1.90725 1.51009 1.66953 1.36181 1.49689 1.22698 1.35097 1.27572 1.23384 0.99656 0.95242 0.81765 1.20194 0.91572 0.97533 0.90192 1.21165 1.44667 0.95025 0.95725 0.90778 1.25852 0.94103 1.00211 0.98064 1.70088 1.43911 1.31964 1.09791 0.85542 0.78973 0.79676 0.77070 1.19129 1.21495 1.19240 1.23405 0.87983 0.92684 0.96264 1.21490 0.93076 0.88830 0.95524 0.94809 0.90899 0.91367 0.92010 0.87758 0.87856 0.97121 0.87630 0.83766 0.87455 0.88790 0.92914 0.90354 0.94304 0.92685 0.88397 0.90886 0.85752 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 9.20 71.98 0.66 -1.16 16 2 C -0.14 -1.89 6.41 -10.77 -0.07 -1.96 16 3 H 0.12 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.19 -3.34 9.68 30.60 0.30 -3.05 16 5 C -0.14 -1.80 4.67 -10.77 -0.05 -1.85 16 6 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 7 C 0.08 1.12 3.40 86.30 0.29 1.42 16 8 N -0.51 -6.39 4.96 -898.10 -4.46 -10.85 16 9 C 0.05 0.51 5.95 86.45 0.51 1.02 16 10 C 0.06 1.25 5.49 86.58 0.48 1.73 16 11 N -0.44 -12.81 2.89 -506.14 -1.46 -14.28 16 12 C 0.17 4.78 7.09 138.18 0.98 5.75 16 13 N -0.32 -11.74 12.21 -50.34 -0.61 -12.35 16 14 N -0.27 -11.32 10.84 -51.64 -0.56 -11.88 16 15 C 0.12 4.76 7.91 136.38 1.08 5.84 16 16 C 0.62 26.01 8.07 86.67 0.70 26.71 16 17 O -0.57 -23.96 16.37 -4.02 -0.07 -24.03 16 18 N -0.62 -27.02 3.69 -862.71 -3.19 -30.21 16 19 C 0.12 5.76 7.35 83.10 0.61 6.37 16 20 C 0.02 1.21 3.77 -11.30 -0.04 1.16 16 21 C -0.53 -27.29 8.83 25.60 0.23 -27.07 16 22 H 0.07 3.61 7.81 -2.91 -0.02 3.58 16 23 C 0.02 0.97 5.46 84.66 0.46 1.43 16 24 N -0.92 -52.80 13.26 21.45 0.28 -52.52 16 25 Si 0.96 41.85 29.54 68.60 2.03 43.88 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 C 0.12 4.87 8.19 83.18 0.68 5.56 16 30 C 0.14 2.30 6.08 85.50 0.52 2.82 16 31 H 0.03 0.63 7.90 -2.39 -0.02 0.61 16 32 H 0.07 0.85 7.84 -2.38 -0.02 0.83 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.45 7.94 -2.39 -0.02 1.43 16 35 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.10 1.16 7.71 -2.38 -0.02 1.14 16 37 H 0.01 0.23 5.99 -2.39 -0.01 0.21 16 38 H 0.11 1.00 8.08 -2.38 -0.02 0.98 16 39 H 0.14 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.11 2.30 7.53 -2.39 -0.02 2.29 16 41 H 0.09 1.90 7.22 -2.39 -0.02 1.89 16 42 H 0.05 2.71 7.51 -2.39 -0.02 2.69 16 43 H 0.08 3.65 8.10 -2.39 -0.02 3.63 16 44 H 0.04 2.13 8.11 -2.39 -0.02 2.11 16 45 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 46 H 0.10 3.73 8.10 -2.38 -0.02 3.71 16 47 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 48 H 0.12 1.93 6.82 -2.39 -0.02 1.91 16 49 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -69.64 394.57 0.26 -69.39 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.96 Total: 18.11 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 7.34 Total: 24.73 kcal Atomic # 7 Polarization: -122.09 SS G_CDS: -9.99 Total: -132.08 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.07 Total: -24.03 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.64 0.26 -69.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277143251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.232 kcal (2) G-P(sol) polarization free energy of solvation -69.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds