Wall clock time and date at job start Wed Apr 1 2020 03:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 115.54741 * 2 1 4 4 C 1.53077 * 117.49686 * 145.72489 * 2 1 3 5 5 C 1.52997 * 117.50417 * 214.32982 * 2 1 3 6 6 H 1.09007 * 117.49709 * 0.02562 * 5 2 1 7 7 C 1.53003 * 117.50460 * 145.01963 * 5 2 1 8 8 N 1.46893 * 109.47412 * 184.91554 * 7 5 2 9 9 C 1.46977 * 111.00311 * 58.19281 * 8 7 5 10 10 C 1.53463 * 109.69374 * 165.36942 * 9 8 7 11 11 N 1.46289 * 108.20067 * 49.45408 * 10 9 8 12 12 C 1.35278 * 124.04000 * 343.77974 * 11 10 9 13 13 N 1.30269 * 107.68996 * 179.74117 * 12 11 10 14 14 N 1.28952 * 109.78423 * 0.06454 * 13 12 11 15 15 C 1.32175 * 109.51681 * 0.06197 * 14 13 12 16 16 C 1.47446 * 126.68494 * 179.97438 * 15 14 13 17 17 O 1.21602 * 120.00410 * 179.82467 * 16 15 14 18 18 N 1.34780 * 119.99845 * 359.82855 * 16 15 14 19 19 C 1.47064 * 136.05455 * 359.62544 * 18 16 15 20 20 C 1.53235 * 88.08273 * 207.20712 * 19 18 16 21 21 C 1.50704 * 114.32802 * 220.47346 * 20 19 18 22 22 H 1.07998 * 120.00487 * 93.75660 * 21 20 19 23 23 C 1.37880 * 119.99691 * 273.76096 * 21 20 19 24 24 N 1.31510 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99725 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47261 * 89.99713 * 25 23 21 27 27 H 1.48503 * 109.47154 * 209.99501 * 25 23 21 28 28 H 1.48502 * 109.47415 * 329.99575 * 25 23 21 29 29 C 1.47061 * 136.05811 * 179.97438 * 18 16 15 30 30 C 1.47375 * 110.99828 * 293.95363 * 8 7 5 31 31 H 1.09004 * 109.47330 * 205.66787 * 1 2 3 32 32 H 1.09000 * 109.47394 * 325.67422 * 1 2 3 33 33 H 1.09007 * 109.47054 * 85.67375 * 1 2 3 34 34 H 1.09001 * 117.48900 * 0.02562 * 4 2 1 35 35 H 1.08998 * 117.51569 * 214.96764 * 4 2 1 36 36 H 1.09003 * 109.46537 * 64.91128 * 7 5 2 37 37 H 1.09000 * 109.46877 * 304.91687 * 7 5 2 38 38 H 1.08994 * 109.44341 * 285.44391 * 9 8 7 39 39 H 1.09010 * 109.43270 * 45.30596 * 9 8 7 40 40 H 1.08999 * 109.71944 * 169.13327 * 10 9 8 41 41 H 1.09006 * 109.71457 * 289.78021 * 10 9 8 42 42 H 1.08997 * 113.47346 * 321.94103 * 19 18 16 43 43 H 1.09006 * 113.47040 * 92.38075 * 19 18 16 44 44 H 1.08996 * 114.02054 * 87.71473 * 20 19 18 45 45 H 0.97002 * 119.99627 * 180.02562 * 24 23 21 46 46 H 1.09004 * 113.47147 * 267.62169 * 29 18 16 47 47 H 1.09004 * 113.46678 * 38.06873 * 29 18 16 48 48 H 1.09002 * 109.74507 * 293.81685 * 30 8 7 49 49 H 1.09000 * 109.74512 * 54.48823 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2367 -1.1220 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2693 7 6 3.5491 -0.7754 -1.4717 8 7 4.0110 -1.9376 -2.2422 9 6 3.0008 -2.3527 -3.2258 10 6 3.6341 -3.3087 -4.2456 11 7 4.3585 -4.3459 -3.5110 12 6 4.6995 -4.2510 -2.2053 13 7 5.3248 -5.3462 -1.8789 14 7 5.4001 -6.1273 -2.9021 15 6 4.8179 -5.5526 -3.9402 16 6 4.6883 -6.1114 -5.2985 17 8 4.1225 -5.4749 -6.1665 18 7 5.1968 -7.3279 -5.5780 19 6 5.9280 -8.3659 -4.8360 20 6 6.5477 -8.8076 -6.1660 21 6 6.6564 -10.3013 -6.3345 22 1 5.8726 -10.8463 -6.8394 23 6 7.7568 -10.9720 -5.8441 24 7 8.7115 -10.3083 -5.2298 25 14 7.8913 -12.8235 -6.0524 26 1 8.5845 -13.1289 -7.3297 27 1 8.6651 -13.3940 -4.9206 28 1 6.5313 -13.4195 -6.0725 29 6 5.2701 -8.1987 -6.7608 30 6 4.3758 -3.0520 -1.3495 31 1 -0.3634 -0.9263 0.4451 32 1 -0.3634 0.8487 0.5795 33 1 -0.3633 0.0775 -1.0248 34 1 1.6113 -1.8600 1.2671 35 1 3.1719 -0.8769 1.2681 36 1 4.3018 -0.5089 -0.7296 37 1 3.3887 0.0666 -2.1450 38 1 2.1824 -2.8588 -2.7139 39 1 2.6157 -1.4739 -3.7432 40 1 2.8544 -3.7660 -4.8546 41 1 4.3258 -2.7594 -4.8844 42 1 6.6565 -7.9643 -4.1316 43 1 5.2787 -9.1185 -4.3884 44 1 7.4613 -8.2745 -6.4286 45 1 9.4858 -10.7802 -4.8851 46 1 4.4438 -8.9063 -6.8309 47 1 5.4402 -7.6551 -7.6902 48 1 5.2474 -2.7775 -0.7553 49 1 3.5394 -3.2849 -0.6905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277143252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:10 Heat of formation + Delta-G solvation = 121.518376 kcal Electronic energy + Delta-G solvation = -30042.579078 eV Core-core repulsion = 26008.605960 eV Total energy + Delta-G solvation = -4033.973118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.18902 -39.67589 -39.36962 -37.42764 -37.18475 -34.54603 -32.69120 -31.80443 -30.45123 -29.69901 -28.84819 -27.35174 -25.46104 -24.96724 -24.82275 -23.73204 -23.13250 -21.45282 -21.11705 -20.56323 -19.48130 -18.71049 -17.19599 -16.97965 -16.72428 -16.42368 -16.13776 -15.82765 -15.53549 -15.19056 -14.72703 -14.60985 -14.39889 -14.27832 -13.98488 -13.60494 -13.28138 -13.25606 -12.92439 -12.64011 -12.57556 -12.28689 -12.26634 -12.14522 -11.94618 -11.82299 -11.52431 -11.44059 -11.29855 -10.90952 -10.85505 -10.56132 -10.49722 -10.31374 -10.26139 -10.15182 -9.90642 -9.30066 -9.24389 -9.06583 -8.85683 -8.54190 -7.97371 -6.12438 -4.18938 1.33066 2.18100 2.56548 3.04977 3.26057 3.28347 3.35492 3.37440 3.42242 3.54718 3.92688 4.05087 4.18007 4.29617 4.36979 4.40869 4.46162 4.58347 4.61674 4.79677 4.87634 4.97502 5.00238 5.08058 5.14124 5.16961 5.19604 5.27667 5.32758 5.33635 5.35621 5.41268 5.53729 5.64359 5.71844 5.79991 5.95479 6.05245 6.10869 6.22357 6.29520 6.33872 6.38474 6.65629 6.68974 6.75308 7.01372 7.57828 7.84285 8.20496 8.20973 8.44254 8.70922 8.84426 9.47624 10.97209 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.002052 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.103165 B =13638.814769 C =14168.948799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.145 4.145 3 H 0.106 0.894 4 C -0.172 4.172 5 C -0.199 4.199 6 H 0.106 0.894 7 C 0.090 3.910 8 N -0.536 5.536 9 C 0.036 3.964 10 C 0.113 3.887 11 N -0.437 5.437 12 C 0.181 3.819 13 N -0.284 5.284 14 N -0.234 5.234 15 C 0.147 3.853 16 C 0.619 3.381 17 O -0.562 6.562 18 N -0.614 5.614 19 C 0.105 3.895 20 C 0.033 3.967 21 C -0.519 4.519 22 H 0.064 0.936 23 C 0.069 3.931 24 N -0.881 5.881 25 Si 0.896 3.104 26 H -0.279 1.279 27 H -0.286 1.286 28 H -0.272 1.272 29 C 0.105 3.895 30 C 0.144 3.856 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.265 0.735 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.115 0.885 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 21.968 9.821 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.164 4.164 3 H 0.124 0.876 4 C -0.209 4.209 5 C -0.218 4.218 6 H 0.124 0.876 7 C -0.038 4.038 8 N -0.259 5.259 9 C -0.092 4.092 10 C -0.009 4.009 11 N -0.128 5.128 12 C -0.086 4.086 13 N -0.128 5.128 14 N -0.080 5.080 15 C -0.120 4.120 16 C 0.404 3.596 17 O -0.442 6.442 18 N -0.345 5.345 19 C -0.017 4.017 20 C 0.014 3.986 21 C -0.557 4.557 22 H 0.083 0.917 23 C -0.135 4.135 24 N -0.517 5.517 25 Si 0.724 3.276 26 H -0.205 1.205 27 H -0.211 1.211 28 H -0.197 1.197 29 C -0.016 4.016 30 C 0.014 3.986 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.124 0.876 40 H 0.128 0.872 41 H 0.119 0.881 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.074 0.926 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.133 0.867 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.268 21.585 9.978 27.230 hybrid contribution -1.279 -0.289 -0.215 1.329 sum -14.547 21.296 9.763 27.576 Atomic orbital electron populations 1.21376 0.92805 1.02056 1.01925 1.22340 0.95287 0.94464 1.04264 0.87623 1.23250 1.02845 1.01443 0.93376 1.23292 1.00543 1.03061 0.94929 0.87635 1.21875 0.93040 0.92324 0.96549 1.62356 1.40765 1.06473 1.16291 1.22571 0.93237 0.99443 0.93945 1.22247 0.97405 0.86919 0.94369 1.45838 1.41706 1.14876 1.10337 1.24681 1.01002 0.98993 0.83940 1.74240 1.17031 1.00268 1.21264 1.75185 1.15674 1.22351 0.94838 1.24310 1.03352 0.85891 0.98412 1.15754 0.79268 0.81556 0.82989 1.90749 1.45839 1.60759 1.46853 1.49749 1.52613 1.13709 1.18422 1.23741 0.93101 0.85152 0.99681 1.20356 0.91660 0.96576 0.90002 1.20839 1.05784 0.90606 1.38476 0.91745 1.25034 0.95313 0.98668 0.94481 1.69959 1.09068 1.35999 1.36695 0.86527 0.78286 0.85036 0.77765 1.20537 1.21128 1.19714 1.23528 1.00851 0.89199 0.87979 1.20648 1.02565 0.83680 0.91673 0.92585 0.92027 0.92187 0.88799 0.88439 0.89619 0.89373 0.92934 0.87579 0.87248 0.88104 0.90583 0.90420 0.91223 0.92550 0.90168 0.91944 0.86708 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.19 37.16 0.38 -0.20 16 2 C -0.14 -0.70 6.13 -90.58 -0.56 -1.26 16 3 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.17 -0.90 9.83 -26.69 -0.26 -1.16 16 5 C -0.20 -1.06 4.08 -90.62 -0.37 -1.43 16 6 H 0.11 0.66 6.19 -51.93 -0.32 0.34 16 7 C 0.09 0.49 5.58 -3.83 -0.02 0.47 16 8 N -0.54 -4.35 4.86 -235.22 -1.14 -5.49 16 9 C 0.04 0.28 4.84 -3.54 -0.02 0.27 16 10 C 0.11 1.30 6.44 -3.92 -0.03 1.27 16 11 N -0.44 -6.79 3.15 -111.26 -0.35 -7.14 16 12 C 0.18 2.69 7.86 -155.33 -1.22 1.47 16 13 N -0.28 -5.27 12.21 32.75 0.40 -4.87 16 14 N -0.23 -4.85 10.85 32.36 0.35 -4.50 16 15 C 0.15 2.86 7.92 -154.59 -1.22 1.64 16 16 C 0.62 12.90 8.07 -12.51 -0.10 12.80 16 17 O -0.56 -11.96 16.37 5.28 0.09 -11.87 16 18 N -0.61 -13.21 3.69 -186.66 -0.69 -13.90 16 19 C 0.10 2.40 7.35 -8.65 -0.06 2.33 16 20 C 0.03 0.80 3.77 -91.38 -0.34 0.46 16 21 C -0.52 -13.35 8.82 -34.44 -0.30 -13.66 16 22 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 23 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 24 N -0.88 -24.64 13.26 55.43 0.74 -23.90 16 25 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 29 C 0.11 2.20 8.19 -8.50 -0.07 2.13 16 30 C 0.14 1.40 5.73 -4.65 -0.03 1.37 16 31 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.09 0.52 8.05 -51.93 -0.42 0.10 16 35 H 0.10 0.46 8.03 -51.93 -0.42 0.04 16 36 H 0.09 0.43 7.86 -51.93 -0.41 0.02 16 37 H 0.09 0.42 8.12 -51.93 -0.42 0.00 16 38 H 0.05 0.40 6.59 -51.93 -0.34 0.06 16 39 H 0.11 0.58 8.00 -51.92 -0.42 0.16 16 40 H 0.11 1.27 7.53 -51.93 -0.39 0.88 16 41 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.85 7.52 -51.93 -0.39 1.46 16 43 H 0.08 1.76 8.10 -51.93 -0.42 1.34 16 44 H 0.07 1.82 8.11 -51.93 -0.42 1.40 16 45 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 48 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.08 0.65 7.15 -51.93 -0.37 0.28 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -31.35 397.71 -11.61 -42.96 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.65 Total: -0.88 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -4.32 Total: 8.25 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.70 Total: -59.82 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.35 -11.61 -42.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277143252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.477 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds