Wall clock time and date at job start Wed Apr 1 2020 03:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 115.54741 * 2 1 4 4 C 1.53077 * 117.49686 * 145.72489 * 2 1 3 5 5 C 1.52997 * 117.50417 * 214.32982 * 2 1 3 6 6 H 1.09007 * 117.49709 * 0.02562 * 5 2 1 7 7 C 1.53003 * 117.50460 * 145.01963 * 5 2 1 8 8 N 1.46893 * 109.47412 * 184.91554 * 7 5 2 9 9 C 1.46977 * 111.00311 * 58.19281 * 8 7 5 10 10 C 1.53463 * 109.69374 * 165.36942 * 9 8 7 11 11 N 1.46289 * 108.20067 * 49.45408 * 10 9 8 12 12 C 1.35278 * 124.04000 * 343.77974 * 11 10 9 13 13 N 1.30269 * 107.68996 * 179.74117 * 12 11 10 14 14 N 1.28952 * 109.78423 * 0.06454 * 13 12 11 15 15 C 1.32175 * 109.51681 * 0.06197 * 14 13 12 16 16 C 1.47446 * 126.68494 * 179.97438 * 15 14 13 17 17 O 1.21602 * 120.00410 * 179.82467 * 16 15 14 18 18 N 1.34780 * 119.99845 * 359.82855 * 16 15 14 19 19 C 1.47064 * 136.05455 * 359.62544 * 18 16 15 20 20 C 1.53235 * 88.08273 * 207.20712 * 19 18 16 21 21 C 1.50704 * 114.32802 * 220.47346 * 20 19 18 22 22 H 1.07998 * 120.00487 * 93.75660 * 21 20 19 23 23 C 1.37880 * 119.99691 * 273.76096 * 21 20 19 24 24 N 1.31510 * 120.00006 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99725 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47261 * 89.99713 * 25 23 21 27 27 H 1.48503 * 109.47154 * 209.99501 * 25 23 21 28 28 H 1.48502 * 109.47415 * 329.99575 * 25 23 21 29 29 C 1.47061 * 136.05811 * 179.97438 * 18 16 15 30 30 C 1.47375 * 110.99828 * 293.95363 * 8 7 5 31 31 H 1.09004 * 109.47330 * 205.66787 * 1 2 3 32 32 H 1.09000 * 109.47394 * 325.67422 * 1 2 3 33 33 H 1.09007 * 109.47054 * 85.67375 * 1 2 3 34 34 H 1.09001 * 117.48900 * 0.02562 * 4 2 1 35 35 H 1.08998 * 117.51569 * 214.96764 * 4 2 1 36 36 H 1.09003 * 109.46537 * 64.91128 * 7 5 2 37 37 H 1.09000 * 109.46877 * 304.91687 * 7 5 2 38 38 H 1.08994 * 109.44341 * 285.44391 * 9 8 7 39 39 H 1.09010 * 109.43270 * 45.30596 * 9 8 7 40 40 H 1.08999 * 109.71944 * 169.13327 * 10 9 8 41 41 H 1.09006 * 109.71457 * 289.78021 * 10 9 8 42 42 H 1.08997 * 113.47346 * 321.94103 * 19 18 16 43 43 H 1.09006 * 113.47040 * 92.38075 * 19 18 16 44 44 H 1.08996 * 114.02054 * 87.71473 * 20 19 18 45 45 H 0.97002 * 119.99627 * 180.02562 * 24 23 21 46 46 H 1.09004 * 113.47147 * 267.62169 * 29 18 16 47 47 H 1.09004 * 113.46678 * 38.06873 * 29 18 16 48 48 H 1.09002 * 109.74507 * 293.81685 * 30 8 7 49 49 H 1.09000 * 109.74512 * 54.48823 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9835 0.0000 4 6 2.2367 -1.1220 0.7647 5 6 2.2365 -1.1207 -0.7653 6 1 1.6113 -1.8578 -1.2693 7 6 3.5491 -0.7754 -1.4717 8 7 4.0110 -1.9376 -2.2422 9 6 3.0008 -2.3527 -3.2258 10 6 3.6341 -3.3087 -4.2456 11 7 4.3585 -4.3459 -3.5110 12 6 4.6995 -4.2510 -2.2053 13 7 5.3248 -5.3462 -1.8789 14 7 5.4001 -6.1273 -2.9021 15 6 4.8179 -5.5526 -3.9402 16 6 4.6883 -6.1114 -5.2985 17 8 4.1225 -5.4749 -6.1665 18 7 5.1968 -7.3279 -5.5780 19 6 5.9280 -8.3659 -4.8360 20 6 6.5477 -8.8076 -6.1660 21 6 6.6564 -10.3013 -6.3345 22 1 5.8726 -10.8463 -6.8394 23 6 7.7568 -10.9720 -5.8441 24 7 8.7115 -10.3083 -5.2298 25 14 7.8913 -12.8235 -6.0524 26 1 8.5845 -13.1289 -7.3297 27 1 8.6651 -13.3940 -4.9206 28 1 6.5313 -13.4195 -6.0725 29 6 5.2701 -8.1987 -6.7608 30 6 4.3758 -3.0520 -1.3495 31 1 -0.3634 -0.9263 0.4451 32 1 -0.3634 0.8487 0.5795 33 1 -0.3633 0.0775 -1.0248 34 1 1.6113 -1.8600 1.2671 35 1 3.1719 -0.8769 1.2681 36 1 4.3018 -0.5089 -0.7296 37 1 3.3887 0.0666 -2.1450 38 1 2.1824 -2.8588 -2.7139 39 1 2.6157 -1.4739 -3.7432 40 1 2.8544 -3.7660 -4.8546 41 1 4.3258 -2.7594 -4.8844 42 1 6.6565 -7.9643 -4.1316 43 1 5.2787 -9.1185 -4.3884 44 1 7.4613 -8.2745 -6.4286 45 1 9.4858 -10.7802 -4.8851 46 1 4.4438 -8.9063 -6.8309 47 1 5.4402 -7.6551 -7.6902 48 1 5.2474 -2.7775 -0.7553 49 1 3.5394 -3.2849 -0.6905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277143252.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:09 Heat of formation + Delta-G solvation = 102.950614 kcal Electronic energy + Delta-G solvation = -30043.384237 eV Core-core repulsion = 26008.605960 eV Total energy + Delta-G solvation = -4034.778277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.49040 -41.16201 -40.20163 -38.94807 -38.02671 -35.57210 -34.67004 -33.03995 -31.52886 -30.94067 -29.69975 -28.20090 -27.21430 -26.73109 -25.64686 -25.02699 -24.20117 -22.29203 -22.03564 -21.58177 -20.43826 -20.16440 -18.87972 -18.41934 -18.01743 -17.78727 -17.16944 -16.74616 -16.65607 -16.45682 -16.17530 -16.03054 -15.32239 -15.17685 -14.88795 -14.63188 -14.40998 -14.13238 -14.06927 -13.88816 -13.55913 -13.29843 -13.23105 -13.14393 -13.00546 -12.86578 -12.75359 -12.68192 -12.58162 -12.45753 -12.20745 -12.17158 -11.84609 -11.59589 -11.38565 -11.08599 -10.99789 -10.90336 -10.74173 -10.54592 -10.52008 -9.73779 -9.51392 -8.14729 -6.27066 -0.08067 0.91484 1.21712 1.49305 1.50659 1.60739 1.90183 1.96656 2.40849 2.47363 2.80853 2.89208 3.09167 3.16443 3.32226 3.66917 3.67497 3.85632 3.89999 3.96446 4.03597 4.19276 4.20573 4.30736 4.32598 4.42717 4.44567 4.47825 4.51155 4.54130 4.59908 4.66367 4.70932 4.76302 4.78688 4.81092 4.93045 4.94349 4.97889 5.00225 5.10712 5.21083 5.28521 5.45136 5.50121 5.57876 5.66862 5.81271 5.81795 6.21613 6.49641 6.77360 6.82579 7.30446 7.43148 8.95522 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.026233 B = 0.002052 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.103165 B =13638.814769 C =14168.948799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.140 4.140 3 H 0.115 0.885 4 C -0.178 4.178 5 C -0.197 4.197 6 H 0.099 0.901 7 C 0.095 3.905 8 N -0.542 5.542 9 C 0.045 3.955 10 C 0.104 3.896 11 N -0.433 5.433 12 C 0.202 3.798 13 N -0.320 5.320 14 N -0.266 5.266 15 C 0.122 3.878 16 C 0.622 3.378 17 O -0.567 6.567 18 N -0.620 5.620 19 C 0.122 3.878 20 C 0.022 3.978 21 C -0.526 4.526 22 H 0.074 0.926 23 C 0.017 3.983 24 N -0.920 5.920 25 Si 0.963 3.037 26 H -0.274 1.274 27 H -0.289 1.289 28 H -0.262 1.262 29 C 0.118 3.882 30 C 0.148 3.852 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.138 0.862 40 H 0.106 0.894 41 H 0.101 0.899 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.040 0.960 45 H 0.264 0.736 46 H 0.098 0.902 47 H 0.073 0.927 48 H 0.129 0.871 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.899 23.601 10.138 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.159 4.159 3 H 0.133 0.867 4 C -0.215 4.215 5 C -0.217 4.217 6 H 0.117 0.883 7 C -0.032 4.032 8 N -0.266 5.266 9 C -0.083 4.083 10 C -0.017 4.017 11 N -0.122 5.122 12 C -0.066 4.066 13 N -0.163 5.163 14 N -0.113 5.113 15 C -0.146 4.146 16 C 0.408 3.592 17 O -0.447 6.447 18 N -0.351 5.351 19 C -0.001 4.001 20 C 0.003 3.997 21 C -0.564 4.564 22 H 0.092 0.908 23 C -0.183 4.183 24 N -0.557 5.557 25 Si 0.788 3.212 26 H -0.200 1.200 27 H -0.214 1.214 28 H -0.186 1.186 29 C -0.003 4.003 30 C 0.018 3.982 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.156 0.844 40 H 0.124 0.876 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.116 0.884 47 H 0.092 0.908 48 H 0.147 0.853 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.990 23.252 10.277 29.512 hybrid contribution -0.805 -0.641 -0.278 1.066 sum -15.794 22.611 9.999 29.338 Atomic orbital electron populations 1.21394 0.92873 1.01988 1.02073 1.22397 0.95279 0.94696 1.03551 0.86706 1.23297 1.03183 1.01651 0.93385 1.23208 1.00441 1.03226 0.94823 0.88337 1.21937 0.93170 0.91280 0.96800 1.62376 1.41400 1.06358 1.16423 1.22600 0.92696 0.99704 0.93291 1.22606 0.97087 0.86487 0.95513 1.46105 1.41125 1.14278 1.10733 1.25592 0.98079 0.99006 0.83947 1.74147 1.19204 1.01781 1.21203 1.75086 1.16531 1.23927 0.95754 1.23983 1.05151 0.87782 0.97666 1.15871 0.78714 0.81010 0.83627 1.90728 1.46034 1.60661 1.47326 1.49681 1.53167 1.14062 1.18232 1.23384 0.92674 0.85426 0.98589 1.20230 0.91979 0.96002 0.91487 1.21191 1.05893 0.91469 1.37848 0.90782 1.25851 0.95078 1.03094 0.94269 1.70095 1.09765 1.37743 1.38141 0.85485 0.78555 0.79675 0.77514 1.20009 1.21448 1.18583 1.23407 0.99548 0.89255 0.88103 1.20888 1.03790 0.82325 0.91195 0.93201 0.91508 0.92028 0.89430 0.87820 0.88746 0.87911 0.92433 0.84440 0.87569 0.88058 0.92800 0.90358 0.94206 0.92711 0.88427 0.90817 0.85315 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 10.19 71.98 0.73 -0.18 16 2 C -0.14 -0.98 6.13 -10.77 -0.07 -1.05 16 3 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 4 C -0.18 -1.44 9.83 30.62 0.30 -1.13 16 5 C -0.20 -1.52 4.08 -10.79 -0.04 -1.56 16 6 H 0.10 0.94 6.19 -2.38 -0.01 0.93 16 7 C 0.09 0.70 5.58 86.31 0.48 1.18 16 8 N -0.54 -7.15 4.86 -898.10 -4.37 -11.52 16 9 C 0.05 0.57 4.84 86.44 0.42 0.99 16 10 C 0.10 2.24 6.44 86.57 0.56 2.79 16 11 N -0.43 -13.23 3.15 -505.91 -1.59 -14.83 16 12 C 0.20 5.83 7.86 138.16 1.09 6.92 16 13 N -0.32 -12.01 12.21 -50.30 -0.61 -12.63 16 14 N -0.27 -11.38 10.85 -51.53 -0.56 -11.94 16 15 C 0.12 4.81 7.92 136.32 1.08 5.89 16 16 C 0.62 26.20 8.07 86.67 0.70 26.90 16 17 O -0.57 -23.99 16.37 -4.04 -0.07 -24.06 16 18 N -0.62 -27.12 3.69 -862.74 -3.19 -30.31 16 19 C 0.12 5.75 7.35 83.09 0.61 6.36 16 20 C 0.02 1.11 3.77 -11.29 -0.04 1.06 16 21 C -0.53 -27.23 8.82 25.60 0.23 -27.00 16 22 H 0.07 3.62 7.81 -2.91 -0.02 3.59 16 23 C 0.02 0.93 5.46 84.66 0.46 1.39 16 24 N -0.92 -52.84 13.26 21.45 0.28 -52.56 16 25 Si 0.96 41.96 29.54 68.60 2.03 43.98 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 27 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 28 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 29 C 0.12 4.89 8.19 83.19 0.68 5.57 16 30 C 0.15 2.53 5.73 85.51 0.49 3.02 16 31 H 0.05 0.42 7.90 -2.38 -0.02 0.40 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.09 0.82 8.05 -2.39 -0.02 0.80 16 35 H 0.10 0.71 8.03 -2.39 -0.02 0.69 16 36 H 0.09 0.59 7.86 -2.39 -0.02 0.57 16 37 H 0.10 0.54 8.12 -2.39 -0.02 0.52 16 38 H 0.06 0.72 6.59 -2.39 -0.02 0.70 16 39 H 0.14 0.94 8.00 -2.38 -0.02 0.92 16 40 H 0.11 2.35 7.53 -2.39 -0.02 2.34 16 41 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.05 2.76 7.52 -2.39 -0.02 2.74 16 43 H 0.08 3.64 8.10 -2.38 -0.02 3.62 16 44 H 0.04 2.18 8.11 -2.39 -0.02 2.16 16 45 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.10 3.72 8.10 -2.39 -0.02 3.70 16 47 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 48 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.09 1.33 7.15 -2.39 -0.02 1.32 16 Total: -1.00 -69.28 397.71 0.56 -68.72 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.96 Total: 13.97 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 7.67 Total: 31.15 kcal Atomic # 7 Polarization: -123.74 SS G_CDS: -10.03 Total: -133.77 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.07 Total: -24.06 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.28 0.56 -68.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277143252.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.670 kcal (2) G-P(sol) polarization free energy of solvation -69.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds