Wall clock time and date at job start Wed Apr 1 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46948 * 2 1 4 4 N 1.46503 * 109.47193 * 120.00178 * 2 1 3 5 5 C 1.46505 * 119.99714 * 299.72532 * 4 2 1 6 6 C 1.52998 * 109.46914 * 270.27504 * 5 4 2 7 7 N 1.46499 * 109.47010 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00369 * 90.00003 * 7 6 5 9 9 C 1.36943 * 119.99813 * 269.99947 * 7 6 5 10 10 H 1.07997 * 119.99675 * 23.05105 * 9 7 6 11 11 C 1.38804 * 120.00094 * 203.04619 * 9 7 6 12 12 N 1.31628 * 119.99887 * 12.93345 * 11 9 7 13 13 Si 1.86800 * 120.00117 * 192.93280 * 11 9 7 14 14 H 1.48495 * 109.47296 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46984 * 120.00230 * 13 11 9 16 16 H 1.48498 * 109.47074 * 239.99793 * 13 11 9 17 17 C 1.34778 * 120.00166 * 119.99874 * 4 2 1 18 18 O 1.21276 * 120.00211 * 179.72294 * 17 4 2 19 19 C 1.50701 * 119.99784 * 359.72512 * 17 4 2 20 20 N 1.46505 * 109.46835 * 179.97438 * 19 17 4 21 21 N 1.39830 * 125.38696 * 269.69388 * 20 19 17 22 22 C 1.30239 * 110.08852 * 179.84144 * 21 20 19 23 23 C 1.45859 * 107.65701 * 0.41025 * 22 21 20 24 24 C 1.40000 * 134.26087 * 179.71553 * 23 22 21 25 25 C 1.37019 * 118.15362 * 180.02562 * 24 23 22 26 26 C 1.38804 * 119.64800 * 0.02562 * 25 24 23 27 27 N 1.31504 * 121.58888 * 359.97438 * 26 25 24 28 28 C 1.32758 * 121.47600 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47050 * 299.99487 * 1 2 3 30 30 H 1.09002 * 109.47148 * 60.00404 * 1 2 3 31 31 H 1.09007 * 109.46717 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46907 * 239.99994 * 2 1 3 33 33 H 1.09001 * 109.47251 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47378 * 299.99655 * 3 2 1 35 35 H 1.09004 * 109.47321 * 60.00247 * 3 2 1 36 36 H 1.08995 * 109.47031 * 30.27920 * 5 4 2 37 37 H 1.09001 * 109.46995 * 150.27349 * 5 4 2 38 38 H 1.09001 * 109.46955 * 300.00118 * 6 5 4 39 39 H 1.09001 * 109.47415 * 60.00103 * 6 5 4 40 40 H 1.08996 * 109.47575 * 95.12407 * 8 7 6 41 41 H 1.09003 * 109.47203 * 215.12356 * 8 7 6 42 42 H 1.09003 * 109.47062 * 335.11878 * 8 7 6 43 43 H 0.97004 * 119.99871 * 179.97438 * 12 11 9 44 44 H 1.08995 * 109.47392 * 299.99786 * 19 17 4 45 45 H 1.09007 * 109.46964 * 60.00007 * 19 17 4 46 46 H 1.07997 * 126.17312 * 180.15412 * 22 21 20 47 47 H 1.07996 * 120.91869 * 0.05468 * 24 23 22 48 48 H 1.08000 * 120.17134 * 180.02562 * 25 24 23 49 49 H 1.07999 * 119.20535 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6694 -0.1866 2.5268 6 6 2.7253 0.8222 2.9830 7 7 2.3767 1.3258 4.3138 8 6 2.8704 0.6385 5.5097 9 6 1.5893 2.4390 4.4400 10 1 0.9307 2.7287 3.6346 11 6 1.6375 3.1951 5.6031 12 7 2.6063 3.0029 6.4733 13 14 0.3277 4.4853 5.9334 14 1 -0.6427 4.5045 4.8096 15 1 -0.3833 4.1571 7.1952 16 1 0.9676 5.8195 6.0585 17 6 2.7932 -1.7865 1.0725 18 8 3.2016 -2.3553 2.0627 19 6 3.1521 -2.3049 -0.2962 20 7 3.9960 -3.4950 -0.1618 21 7 5.3929 -3.4943 -0.0992 22 6 5.8358 -4.7130 0.0229 23 6 4.6811 -5.6041 0.0360 24 6 4.5184 -6.9911 0.1356 25 6 3.2448 -7.4959 0.1124 26 6 2.1656 -6.6313 -0.0081 27 7 2.3323 -5.3302 -0.1009 28 6 3.5420 -4.7834 -0.0841 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.6950 0.3002 2.4868 37 1 1.6319 -1.0172 3.2316 38 1 3.6997 0.3352 3.0229 39 1 2.7629 1.6528 2.2782 40 1 3.7851 1.1207 5.8544 41 1 2.1157 0.6877 6.2947 42 1 3.0776 -0.4045 5.2698 43 1 2.6402 3.5315 7.2859 44 1 2.2419 -2.5637 -0.8370 45 1 3.6947 -1.5354 -0.8455 46 1 6.8713 -5.0104 0.0967 47 1 5.3729 -7.6448 0.2287 48 1 3.0816 -8.5608 0.1875 49 1 1.1648 -7.0369 -0.0260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284543346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:34 Heat of formation + Delta-G solvation = 106.529237 kcal Electronic energy + Delta-G solvation = -30696.823490 eV Core-core repulsion = 26662.200394 eV Total energy + Delta-G solvation = -4034.623096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.74056 -39.93745 -38.24158 -36.76061 -35.39303 -33.99337 -32.17734 -31.89623 -31.02440 -30.30543 -28.89307 -27.35244 -26.85212 -25.75830 -24.17315 -23.56120 -22.83840 -22.02444 -21.18931 -20.41482 -18.85191 -17.79622 -17.64769 -17.23343 -16.56963 -16.36777 -15.74970 -15.43653 -15.26303 -14.77868 -14.36972 -14.15178 -14.04403 -13.90559 -13.62517 -13.47576 -13.26904 -13.06576 -12.81739 -12.74450 -12.67615 -12.23279 -12.19053 -12.10219 -11.87565 -11.46855 -11.15927 -11.11570 -10.95207 -10.89226 -10.81870 -10.76591 -10.47438 -10.10153 -9.90214 -9.72109 -9.68473 -9.66555 -9.16651 -8.69858 -8.45530 -8.38773 -6.68302 -5.68393 -3.16334 0.58999 1.10159 1.85990 2.29854 2.69750 3.12851 3.38321 3.44873 3.46979 3.59887 3.96441 4.08913 4.38977 4.44258 4.52407 4.56276 4.70085 4.76090 4.88391 4.93149 5.04992 5.12768 5.15786 5.31149 5.40396 5.45623 5.58409 5.62405 5.72283 5.79931 5.81999 5.88459 5.88577 6.03271 6.09885 6.23036 6.28574 6.30789 6.40205 6.54053 6.64367 6.75347 6.92271 7.02024 7.27154 7.45210 7.57642 7.73185 7.78498 7.84260 8.30038 8.43620 9.26729 9.90684 10.41214 11.35942 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002577 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.655571 B =10860.911151 C =11449.565874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 C -0.170 4.170 4 N -0.598 5.598 5 C 0.094 3.906 6 C 0.139 3.861 7 N -0.599 5.599 8 C 0.162 3.838 9 C -0.255 4.255 10 H 0.067 0.933 11 C 0.001 3.999 12 N -0.905 5.905 13 Si 0.903 3.097 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.291 1.291 17 C 0.496 3.504 18 O -0.522 6.522 19 C 0.125 3.875 20 N -0.375 5.375 21 N -0.225 5.225 22 C 0.083 3.917 23 C -0.228 4.228 24 C 0.006 3.994 25 C -0.221 4.221 26 C 0.168 3.832 27 N -0.501 5.501 28 C 0.325 3.675 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.054 0.946 40 H 0.030 0.970 41 H 0.040 0.960 42 H 0.000 1.000 43 H 0.251 0.749 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.202 0.798 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.000 -18.408 -19.814 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.025 3.975 3 C -0.227 4.227 4 N -0.332 5.332 5 C -0.030 4.030 6 C 0.010 3.990 7 N -0.322 5.322 8 C 0.018 3.982 9 C -0.384 4.384 10 H 0.085 0.915 11 C -0.197 4.197 12 N -0.550 5.550 13 Si 0.734 3.266 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.218 1.218 17 C 0.280 3.720 18 O -0.397 6.397 19 C -0.001 4.001 20 N -0.164 5.164 21 N -0.036 5.036 22 C -0.116 4.116 23 C -0.238 4.238 24 C -0.022 4.022 25 C -0.243 4.243 26 C -0.001 4.001 27 N -0.216 5.216 28 C 0.086 3.914 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.049 0.951 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.062 0.938 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.218 0.782 47 H 0.157 0.843 48 H 0.158 0.842 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.799 -16.576 -19.270 25.431 hybrid contribution -0.307 -0.482 0.538 0.784 sum 0.492 -17.057 -18.732 25.340 Atomic orbital electron populations 1.22179 0.94586 1.02451 1.03075 1.21196 0.94968 0.94187 0.87174 1.22339 1.01811 0.95242 1.03349 1.48183 1.50065 1.26942 1.08033 1.22496 1.00706 0.98874 0.80893 1.21178 0.94525 0.94854 0.88411 1.43852 1.59266 1.29717 0.99405 1.20795 0.98851 0.90274 0.88324 1.19184 1.15263 1.01926 1.02075 0.91487 1.25042 0.97742 0.98221 0.98706 1.70102 1.30978 1.42284 1.11646 0.86205 0.81261 0.81293 0.77885 1.20348 1.21644 1.21758 1.20666 0.79299 0.80945 0.91054 1.90753 1.52306 1.57584 1.39055 1.21539 0.95156 0.86465 0.96920 1.47613 1.02738 1.02674 1.63362 1.76760 0.88239 1.21637 1.16949 1.25043 0.99120 0.88433 0.99025 1.20511 0.94087 0.95209 1.14016 1.20763 0.97960 0.92130 0.91389 1.21628 0.93165 1.01555 1.07937 1.22723 0.99645 0.86701 0.91015 1.66726 1.22426 1.14181 1.18232 1.18924 0.90337 0.86232 0.95865 0.91279 0.91409 0.92336 0.90032 0.92073 0.91661 0.90358 0.90526 0.90825 0.94690 0.92807 0.95122 0.94165 0.98182 0.93820 0.86099 0.86073 0.78165 0.84306 0.84225 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.18 37.16 0.34 -1.36 16 2 C 0.13 1.44 3.17 -67.93 -0.22 1.22 16 3 C -0.17 -1.96 8.12 37.16 0.30 -1.66 16 4 N -0.60 -9.14 2.40 -166.11 -0.40 -9.54 16 5 C 0.09 1.79 5.15 -4.04 -0.02 1.77 16 6 C 0.14 3.04 5.68 -4.04 -0.02 3.02 16 7 N -0.60 -15.78 2.92 -181.13 -0.53 -16.30 16 8 C 0.16 4.34 8.98 59.84 0.54 4.88 16 9 C -0.25 -7.06 9.65 -15.06 -0.15 -7.21 16 10 H 0.07 1.78 7.86 -52.49 -0.41 1.36 16 11 C 0.00 0.04 5.10 -17.43 -0.09 -0.05 16 12 N -0.91 -27.15 10.71 55.49 0.59 -26.56 16 13 Si 0.90 22.02 29.57 -169.99 -5.03 16.99 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 C 0.50 8.23 7.74 -10.98 -0.09 8.14 16 18 O -0.52 -11.23 16.01 5.56 0.09 -11.14 16 19 C 0.12 1.58 5.20 -5.19 -0.03 1.55 16 20 N -0.37 -5.45 3.13 -61.60 -0.19 -5.65 16 21 N -0.22 -3.17 12.40 31.85 0.39 -2.78 16 22 C 0.08 0.91 12.29 -15.18 -0.19 0.73 16 23 C -0.23 -2.69 6.38 -105.18 -0.67 -3.36 16 24 C 0.01 0.05 10.18 -39.36 -0.40 -0.35 16 25 C -0.22 -1.71 10.04 -39.81 -0.40 -2.11 16 26 C 0.17 1.61 11.15 -17.48 -0.19 1.41 16 27 N -0.50 -6.69 10.40 -12.34 -0.13 -6.81 16 28 C 0.32 4.62 7.97 -156.12 -1.24 3.38 16 29 H 0.07 0.84 6.67 -51.93 -0.35 0.49 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 0.69 5.77 -51.93 -0.30 0.39 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 1.12 6.16 -51.93 -0.32 0.80 16 36 H 0.08 1.42 6.44 -51.93 -0.33 1.09 16 37 H 0.07 1.59 7.42 -51.93 -0.39 1.21 16 38 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 39 H 0.05 1.13 5.32 -51.93 -0.28 0.85 16 40 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 41 H 0.04 1.12 7.34 -51.93 -0.38 0.74 16 42 H 0.00 -0.01 8.03 -51.93 -0.42 -0.43 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.12 1.26 7.79 -51.93 -0.40 0.86 16 45 H 0.12 1.24 7.78 -51.92 -0.40 0.83 16 46 H 0.20 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 49 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 399.94 15.07 6.03 6.03 Total: -1.00 -37.61 399.94 -8.99 -46.61 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -7.30 Total: -0.85 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -2.52 Total: 10.01 kcal Atomic # 7 Polarization: -67.38 SS G_CDS: -0.26 Total: -67.64 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.61 -8.99 -46.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284543346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.135 kcal (2) G-P(sol) polarization free energy of solvation -37.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds