Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46948 * 2 1 4 4 N 1.46503 * 109.47193 * 120.00178 * 2 1 3 5 5 C 1.46505 * 119.99714 * 299.72532 * 4 2 1 6 6 C 1.52998 * 109.46914 * 270.27504 * 5 4 2 7 7 N 1.46499 * 109.47010 * 180.02562 * 6 5 4 8 8 C 1.46495 * 120.00369 * 90.00003 * 7 6 5 9 9 C 1.36943 * 119.99813 * 269.99947 * 7 6 5 10 10 H 1.07997 * 119.99675 * 23.05105 * 9 7 6 11 11 C 1.38804 * 120.00094 * 203.04619 * 9 7 6 12 12 N 1.31628 * 119.99887 * 12.93345 * 11 9 7 13 13 Si 1.86800 * 120.00117 * 192.93280 * 11 9 7 14 14 H 1.48495 * 109.47296 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.46984 * 120.00230 * 13 11 9 16 16 H 1.48498 * 109.47074 * 239.99793 * 13 11 9 17 17 C 1.34778 * 120.00166 * 119.99874 * 4 2 1 18 18 O 1.21276 * 120.00211 * 179.72294 * 17 4 2 19 19 C 1.50701 * 119.99784 * 359.72512 * 17 4 2 20 20 N 1.46505 * 109.46835 * 179.97438 * 19 17 4 21 21 N 1.39830 * 125.38696 * 269.69388 * 20 19 17 22 22 C 1.30239 * 110.08852 * 179.84144 * 21 20 19 23 23 C 1.45859 * 107.65701 * 0.41025 * 22 21 20 24 24 C 1.40000 * 134.26087 * 179.71553 * 23 22 21 25 25 C 1.37019 * 118.15362 * 180.02562 * 24 23 22 26 26 C 1.38804 * 119.64800 * 0.02562 * 25 24 23 27 27 N 1.31504 * 121.58888 * 359.97438 * 26 25 24 28 28 C 1.32758 * 121.47600 * 0.02562 * 27 26 25 29 29 H 1.08994 * 109.47050 * 299.99487 * 1 2 3 30 30 H 1.09002 * 109.47148 * 60.00404 * 1 2 3 31 31 H 1.09007 * 109.46717 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46907 * 239.99994 * 2 1 3 33 33 H 1.09001 * 109.47251 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47378 * 299.99655 * 3 2 1 35 35 H 1.09004 * 109.47321 * 60.00247 * 3 2 1 36 36 H 1.08995 * 109.47031 * 30.27920 * 5 4 2 37 37 H 1.09001 * 109.46995 * 150.27349 * 5 4 2 38 38 H 1.09001 * 109.46955 * 300.00118 * 6 5 4 39 39 H 1.09001 * 109.47415 * 60.00103 * 6 5 4 40 40 H 1.08996 * 109.47575 * 95.12407 * 8 7 6 41 41 H 1.09003 * 109.47203 * 215.12356 * 8 7 6 42 42 H 1.09003 * 109.47062 * 335.11878 * 8 7 6 43 43 H 0.97004 * 119.99871 * 179.97438 * 12 11 9 44 44 H 1.08995 * 109.47392 * 299.99786 * 19 17 4 45 45 H 1.09007 * 109.46964 * 60.00007 * 19 17 4 46 46 H 1.07997 * 126.17312 * 180.15412 * 22 21 20 47 47 H 1.07996 * 120.91869 * 0.05468 * 24 23 22 48 48 H 1.08000 * 120.17134 * 180.02562 * 25 24 23 49 49 H 1.07999 * 119.20535 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.6694 -0.1866 2.5268 6 6 2.7253 0.8222 2.9830 7 7 2.3767 1.3258 4.3138 8 6 2.8704 0.6385 5.5097 9 6 1.5893 2.4390 4.4400 10 1 0.9307 2.7287 3.6346 11 6 1.6375 3.1951 5.6031 12 7 2.6063 3.0029 6.4733 13 14 0.3277 4.4853 5.9334 14 1 -0.6427 4.5045 4.8096 15 1 -0.3833 4.1571 7.1952 16 1 0.9676 5.8195 6.0585 17 6 2.7932 -1.7865 1.0725 18 8 3.2016 -2.3553 2.0627 19 6 3.1521 -2.3049 -0.2962 20 7 3.9960 -3.4950 -0.1618 21 7 5.3929 -3.4943 -0.0992 22 6 5.8358 -4.7130 0.0229 23 6 4.6811 -5.6041 0.0360 24 6 4.5184 -6.9911 0.1356 25 6 3.2448 -7.4959 0.1124 26 6 2.1656 -6.6313 -0.0081 27 7 2.3323 -5.3302 -0.1009 28 6 3.5420 -4.7834 -0.0841 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.6950 0.3002 2.4868 37 1 1.6319 -1.0172 3.2316 38 1 3.6997 0.3352 3.0229 39 1 2.7629 1.6528 2.2782 40 1 3.7851 1.1207 5.8544 41 1 2.1157 0.6877 6.2947 42 1 3.0776 -0.4045 5.2698 43 1 2.6402 3.5315 7.2859 44 1 2.2419 -2.5637 -0.8370 45 1 3.6947 -1.5354 -0.8455 46 1 6.8713 -5.0104 0.0967 47 1 5.3729 -7.6448 0.2287 48 1 3.0816 -8.5608 0.1875 49 1 1.1648 -7.0369 -0.0260 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284543346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = 82.245512 kcal Electronic energy + Delta-G solvation = -30697.876511 eV Core-core repulsion = 26662.200394 eV Total energy + Delta-G solvation = -4035.676117 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.57039 -41.19375 -39.04853 -38.17983 -37.22705 -34.91162 -33.78124 -32.82804 -32.54778 -31.11305 -30.38810 -28.43342 -28.00242 -27.86569 -25.28616 -24.90219 -23.68309 -23.11245 -22.53366 -21.90163 -19.98769 -18.99300 -18.71034 -18.51412 -18.03775 -17.24064 -17.04511 -16.66769 -16.49007 -16.28875 -15.57918 -15.40218 -15.23073 -14.98977 -14.93299 -14.77048 -14.55966 -14.21671 -14.07999 -13.92420 -13.58563 -13.53177 -13.35888 -13.23746 -13.13446 -12.88028 -12.83874 -12.73195 -12.53777 -12.17782 -12.14558 -12.00833 -11.96890 -11.84145 -11.73768 -11.48418 -10.99275 -10.72904 -10.44240 -10.02917 -9.90569 -9.29521 -8.81427 -7.85383 -5.37559 -0.15185 0.36311 1.00821 1.42754 1.45627 1.46667 1.47915 1.57496 1.92845 2.49594 2.84068 3.21434 3.28032 3.29123 3.32144 3.65976 3.72275 3.83846 3.86842 3.97470 4.08627 4.10446 4.12133 4.21117 4.26734 4.47117 4.48652 4.56643 4.64902 4.66949 4.75190 4.79366 4.81736 4.85327 4.96913 4.99968 5.05334 5.19182 5.24070 5.34418 5.37106 5.43010 5.48165 5.54061 5.60487 5.61924 5.82971 6.27313 6.34135 6.42742 6.94333 7.03182 7.08557 7.77851 8.26861 9.19017 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.002577 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.655571 B =10860.911151 C =11449.565874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.123 3.877 3 C -0.167 4.167 4 N -0.594 5.594 5 C 0.117 3.883 6 C 0.147 3.853 7 N -0.616 5.616 8 C 0.181 3.819 9 C -0.261 4.261 10 H 0.080 0.920 11 C -0.058 4.058 12 N -0.943 5.943 13 Si 0.975 3.025 14 H -0.259 1.259 15 H -0.293 1.293 16 H -0.291 1.291 17 C 0.491 3.509 18 O -0.581 6.581 19 C 0.132 3.868 20 N -0.393 5.393 21 N -0.269 5.269 22 C 0.093 3.907 23 C -0.250 4.250 24 C 0.009 3.991 25 C -0.213 4.213 26 C 0.158 3.842 27 N -0.538 5.538 28 C 0.291 3.709 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.098 0.902 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.041 0.959 38 H 0.014 0.986 39 H 0.066 0.934 40 H 0.005 0.995 41 H 0.020 0.980 42 H 0.010 0.990 43 H 0.248 0.752 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.241 0.759 47 H 0.178 0.822 48 H 0.180 0.820 49 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.023 -19.801 -22.624 30.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.021 3.979 3 C -0.224 4.224 4 N -0.327 5.327 5 C -0.009 4.009 6 C 0.020 3.980 7 N -0.340 5.340 8 C 0.036 3.964 9 C -0.391 4.391 10 H 0.098 0.902 11 C -0.252 4.252 12 N -0.590 5.590 13 Si 0.803 3.197 14 H -0.183 1.183 15 H -0.220 1.220 16 H -0.218 1.218 17 C 0.278 3.722 18 O -0.460 6.460 19 C 0.007 3.993 20 N -0.183 5.183 21 N -0.080 5.080 22 C -0.105 4.105 23 C -0.260 4.260 24 C -0.020 4.020 25 C -0.234 4.234 26 C -0.009 4.009 27 N -0.254 5.254 28 C 0.053 3.947 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.032 0.968 39 H 0.084 0.916 40 H 0.024 0.976 41 H 0.039 0.961 42 H 0.028 0.972 43 H 0.057 0.943 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.257 0.743 47 H 0.195 0.805 48 H 0.197 0.803 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.203 -17.982 -22.162 28.540 hybrid contribution 0.016 -0.220 1.356 1.374 sum -0.186 -18.202 -20.806 27.644 Atomic orbital electron populations 1.22158 0.93513 1.02667 1.03495 1.21592 0.95817 0.94031 0.86450 1.22306 1.01362 0.95303 1.03452 1.48240 1.49688 1.26904 1.07842 1.21848 0.99703 0.96712 0.82609 1.21229 0.94360 0.95598 0.86861 1.44088 1.59437 1.29867 1.00589 1.20467 0.97008 0.90575 0.88370 1.19584 1.15231 1.01831 1.02408 0.90225 1.25938 0.99905 1.00737 0.98658 1.70281 1.32951 1.43671 1.12064 0.85084 0.78661 0.78115 0.77860 1.18302 1.22024 1.21830 1.21503 0.78110 0.80376 0.92197 1.90715 1.54513 1.59408 1.41340 1.21612 0.96487 0.87109 0.94124 1.47730 1.02986 1.03099 1.64489 1.76684 0.88514 1.23407 1.19407 1.25780 1.00730 0.87563 0.96455 1.20917 0.93564 0.96647 1.14823 1.21296 0.99765 0.91151 0.89737 1.22097 0.92264 1.03259 1.05780 1.23423 1.01845 0.85987 0.89689 1.66731 1.22570 1.16035 1.20021 1.19349 0.91556 0.86672 0.97089 0.93446 0.88322 0.92249 0.86336 0.92779 0.88327 0.93360 0.89869 0.94065 0.96785 0.91576 0.97645 0.96080 0.97162 0.94255 0.83839 0.83632 0.74308 0.80501 0.80279 0.79078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.18 71.98 0.66 -2.29 16 2 C 0.12 2.52 3.17 44.99 0.14 2.66 16 3 C -0.17 -3.55 8.12 71.98 0.58 -2.96 16 4 N -0.59 -18.22 2.40 -797.83 -1.92 -20.14 16 5 C 0.12 4.58 5.15 86.38 0.44 5.02 16 6 C 0.15 6.66 5.68 86.38 0.49 7.15 16 7 N -0.62 -33.52 2.92 -726.96 -2.12 -35.64 16 8 C 0.18 10.19 8.98 127.77 1.15 11.34 16 9 C -0.26 -14.63 9.65 84.03 0.81 -13.82 16 10 H 0.08 4.19 7.86 -2.91 -0.02 4.16 16 11 C -0.06 -3.32 5.10 84.86 0.43 -2.89 16 12 N -0.94 -58.26 10.71 21.65 0.23 -58.03 16 13 Si 0.98 45.61 29.57 68.60 2.03 47.64 16 14 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 C 0.49 16.66 7.74 87.66 0.68 17.34 16 18 O -0.58 -26.33 16.01 -3.02 -0.05 -26.38 16 19 C 0.13 3.28 5.20 85.63 0.45 3.73 16 20 N -0.39 -11.53 3.13 -348.80 -1.09 -12.62 16 21 N -0.27 -7.66 12.40 -53.15 -0.66 -8.32 16 22 C 0.09 1.98 12.29 86.90 1.07 3.05 16 23 C -0.25 -5.62 6.38 -20.22 -0.13 -5.75 16 24 C 0.01 0.12 10.18 22.41 0.23 0.35 16 25 C -0.21 -2.62 10.04 22.12 0.22 -2.40 16 26 C 0.16 2.74 11.15 84.88 0.95 3.69 16 27 N -0.54 -14.12 10.40 -192.97 -2.01 -16.12 16 28 C 0.29 8.25 7.97 134.12 1.07 9.32 16 29 H 0.05 1.09 6.67 -2.39 -0.02 1.07 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.12 1.62 5.77 -2.39 -0.01 1.60 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.05 1.33 6.16 -2.39 -0.01 1.32 16 36 H 0.08 3.15 6.44 -2.39 -0.02 3.13 16 37 H 0.04 1.88 7.42 -2.39 -0.02 1.87 16 38 H 0.01 0.68 8.07 -2.39 -0.02 0.66 16 39 H 0.07 2.83 5.32 -2.39 -0.01 2.82 16 40 H 0.01 0.32 7.34 -2.39 -0.02 0.30 16 41 H 0.02 1.22 7.34 -2.39 -0.02 1.20 16 42 H 0.01 0.52 8.03 -2.39 -0.02 0.50 16 43 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 44 H 0.14 2.80 7.79 -2.39 -0.02 2.78 16 45 H 0.15 2.77 7.78 -2.38 -0.02 2.75 16 46 H 0.24 2.58 8.06 -2.91 -0.02 2.56 16 47 H 0.18 1.03 8.06 -2.91 -0.02 1.01 16 48 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 49 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -87.88 399.94 4.61 -83.27 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 0.95 Total: 12.81 kcal Atomic # 6 Polarization: 24.28 SS G_CDS: 9.24 Total: 33.52 kcal Atomic # 7 Polarization: -143.30 SS G_CDS: -7.56 Total: -150.86 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -87.88 4.61 -83.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284543346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.512 kcal (2) G-P(sol) polarization free energy of solvation -87.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds