Wall clock time and date at job start Wed Apr 1 2020 04:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00234 * 2 1 4 4 C 1.53008 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46907 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.46930 * 179.97438 * 5 4 3 7 7 C 1.37552 * 127.16290 * 94.58107 * 6 5 4 8 8 C 1.47856 * 126.46904 * 359.97438 * 7 6 5 9 9 C 1.39999 * 120.55964 * 161.11310 * 8 7 6 10 10 C 1.38347 * 118.29378 * 179.97438 * 9 8 7 11 11 C 1.38359 * 119.30665 * 0.02562 * 10 9 8 12 12 N 1.31908 * 121.07636 * 0.02562 * 11 10 9 13 13 C 1.31703 * 121.87646 * 359.67937 * 12 11 10 14 14 N 1.31258 * 107.05963 * 179.97438 * 7 6 5 15 15 N 1.28511 * 109.93156 * 359.75171 * 14 7 6 16 16 C 1.31370 * 110.08090 * 0.41349 * 15 14 7 17 17 N 1.38408 * 126.37188 * 179.85498 * 16 15 14 18 18 C 1.46905 * 111.00089 * 304.20816 * 17 16 15 19 19 C 1.46901 * 110.99851 * 68.15783 * 17 16 15 20 20 H 1.08996 * 109.47207 * 300.00111 * 19 17 16 21 21 C 1.52993 * 109.46965 * 60.00157 * 19 17 16 22 22 C 1.50704 * 109.47189 * 180.02562 * 19 17 16 23 23 H 1.08006 * 119.99906 * 359.97438 * 22 19 17 24 24 C 1.37871 * 120.00019 * 180.02562 * 22 19 17 25 25 N 1.31518 * 120.00334 * 359.97438 * 24 22 19 26 26 Si 1.86800 * 120.00019 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.47174 * 89.99616 * 26 24 22 28 28 H 1.48497 * 109.47334 * 209.99403 * 26 24 22 29 29 H 1.48502 * 109.47130 * 329.99807 * 26 24 22 30 30 H 1.09007 * 109.46727 * 60.00360 * 1 2 3 31 31 H 1.08994 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47134 * 300.00309 * 1 2 3 33 33 H 1.09000 * 109.47188 * 59.99656 * 3 2 1 34 34 H 1.08998 * 109.47044 * 299.99630 * 3 2 1 35 35 H 1.09000 * 109.46866 * 60.00001 * 4 3 2 36 36 H 1.08998 * 109.47241 * 300.00052 * 4 3 2 37 37 H 1.08999 * 109.46619 * 60.00336 * 5 4 3 38 38 H 1.08997 * 109.47608 * 300.00733 * 5 4 3 39 39 H 1.08001 * 120.85194 * 0.02562 * 9 8 7 40 40 H 1.08000 * 120.34967 * 180.02562 * 10 9 8 41 41 H 1.07999 * 119.45570 * 180.02562 * 11 10 9 42 42 H 1.07999 * 119.71798 * 180.29092 * 13 12 11 43 43 H 1.08995 * 109.47208 * 179.49812 * 18 17 16 44 44 H 1.09000 * 109.46608 * 299.49715 * 18 17 16 45 45 H 1.09000 * 109.47423 * 59.49504 * 18 17 16 46 46 H 1.09002 * 109.47340 * 60.00392 * 21 19 17 47 47 H 1.09001 * 109.47293 * 180.02562 * 21 19 17 48 48 H 1.08995 * 109.47422 * 299.99763 * 21 19 17 49 49 H 0.96995 * 120.00230 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1579 2.5823 0.0000 6 7 5.6183 2.4666 0.0012 7 6 6.4544 2.4874 -1.0908 8 6 6.0490 2.6316 -2.5054 9 6 6.9777 3.0280 -3.4751 10 6 6.5478 3.1475 -4.7847 11 6 5.2266 2.8745 -5.0913 12 7 4.3732 2.5038 -4.1563 13 6 4.7356 2.3704 -2.8972 14 7 7.6800 2.3551 -0.6400 15 7 7.6675 2.2596 0.6415 16 6 6.4325 2.3164 1.0860 17 7 6.0322 2.2433 2.4089 18 6 6.5325 1.0165 3.0434 19 6 6.4605 3.4341 3.1550 20 1 7.5472 3.5119 3.1225 21 6 5.8407 4.6820 2.5231 22 6 6.0082 3.3186 4.5880 23 1 5.4574 2.4479 4.9119 24 6 6.2968 4.3249 5.4851 25 7 6.9672 5.3854 5.0906 26 14 5.7357 4.1821 7.2611 27 1 6.7893 3.5064 8.0604 28 1 5.4893 5.5385 7.8130 29 1 4.4825 3.3877 7.3219 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 -0.8891 36 1 3.8568 0.6438 0.8908 37 1 3.8359 3.1237 0.8896 38 1 3.8365 3.1228 -0.8903 39 1 8.0035 3.2345 -3.2078 40 1 7.2364 3.4506 -5.5595 41 1 4.8885 2.9666 -6.1129 42 1 4.0089 2.0602 -2.1609 43 1 6.2110 0.9887 4.0845 44 1 6.1361 0.1479 2.5174 45 1 7.6215 1.0024 2.9989 46 1 4.7540 4.6043 2.5557 47 1 6.1588 5.5656 3.0765 48 1 6.1681 4.7654 1.4869 49 1 7.1705 6.0932 5.7219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316038477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:31 Heat of formation + Delta-G solvation = 88.232262 kcal Electronic energy + Delta-G solvation = -31148.708511 eV Core-core repulsion = 27113.291999 eV Total energy + Delta-G solvation = -4035.416512 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64909 -40.15148 -38.22497 -37.12901 -35.82353 -33.35715 -32.82914 -31.99979 -31.71103 -29.54257 -28.62747 -27.44370 -25.86438 -25.34167 -24.42276 -24.24042 -23.60812 -22.28423 -21.60992 -20.79052 -19.48507 -17.53164 -17.32836 -16.66849 -16.45803 -16.41020 -16.23121 -16.02572 -15.40427 -15.33648 -14.86266 -14.59607 -14.37358 -14.11305 -13.91305 -13.66227 -13.24645 -13.21725 -12.80573 -12.64772 -12.43707 -12.16015 -11.99991 -11.79781 -11.39287 -11.24077 -11.20475 -11.15651 -11.02026 -10.86570 -10.53095 -10.48062 -10.31890 -10.24736 -10.14017 -9.88943 -9.87053 -9.70072 -9.64975 -9.16598 -8.59677 -8.24461 -7.80104 -6.14311 -4.21232 0.53845 1.01972 2.18201 2.40662 3.14366 3.23954 3.31043 3.33490 3.52955 3.68404 4.02625 4.25695 4.28491 4.46550 4.50996 4.60761 4.70323 4.80201 4.84080 4.90247 4.94145 5.14671 5.15349 5.17785 5.18485 5.23532 5.33395 5.38891 5.46363 5.59557 5.63662 5.76044 5.87042 5.97448 6.00456 6.12772 6.28949 6.31742 6.36972 6.56898 6.62761 6.75657 6.82355 6.92693 7.00047 7.27470 7.54877 7.66004 7.67077 7.80948 8.09115 8.35081 8.82421 9.03038 9.44122 10.92653 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.003630 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.285312 B = 7711.021638 C = 9721.402349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.066 3.934 4 C -0.137 4.137 5 C 0.107 3.893 6 N -0.461 5.461 7 C 0.187 3.813 8 C -0.046 4.046 9 C -0.039 4.039 10 C -0.167 4.167 11 C 0.098 3.902 12 N -0.478 5.478 13 C 0.096 3.904 14 N -0.266 5.266 15 N -0.316 5.316 16 C 0.400 3.600 17 N -0.473 5.473 18 C 0.048 3.952 19 C 0.224 3.776 20 H 0.021 0.979 21 C -0.132 4.132 22 C -0.512 4.512 23 H 0.068 0.932 24 C 0.063 3.937 25 N -0.888 5.888 26 Si 0.901 3.099 27 H -0.279 1.279 28 H -0.286 1.286 29 H -0.273 1.273 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.162 0.838 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.093 0.907 48 H 0.000 1.000 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.316 -5.498 -16.586 19.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.175 4.175 5 C -0.016 4.016 6 N -0.153 5.153 7 C -0.077 4.077 8 C -0.051 4.051 9 C -0.066 4.066 10 C -0.187 4.187 11 C -0.060 4.060 12 N -0.186 5.186 13 C -0.063 4.063 14 N -0.108 5.108 15 N -0.161 5.161 16 C 0.046 3.954 17 N -0.200 5.200 18 C -0.100 4.100 19 C 0.120 3.880 20 H 0.038 0.962 21 C -0.191 4.191 22 C -0.550 4.550 23 H 0.086 0.914 24 C -0.139 4.139 25 N -0.526 5.526 26 Si 0.729 3.271 27 H -0.206 1.206 28 H -0.212 1.212 29 H -0.197 1.197 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.112 0.888 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.176 0.824 42 H 0.179 0.821 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.112 0.888 48 H 0.019 0.981 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.011 -5.773 -16.648 19.791 hybrid contribution -0.212 0.652 1.227 1.405 sum -9.223 -5.121 -15.421 18.684 Atomic orbital electron populations 1.22748 0.80818 1.02784 1.00111 1.87872 1.19846 1.27649 1.95463 1.22368 0.92779 0.85102 1.00895 1.21881 0.94026 0.96604 1.04996 1.21881 0.75971 0.98164 1.05597 1.46312 1.08137 1.54596 1.06265 1.22179 0.87710 1.09580 0.88201 1.18495 0.95374 1.02701 0.88503 1.21692 1.00199 0.93048 0.91682 1.22130 0.97726 1.01882 0.96936 1.22901 0.89897 0.94236 0.98941 1.67700 1.37446 1.12465 1.00949 1.23269 0.93581 0.95899 0.93556 1.74265 1.16410 1.16144 1.03948 1.74743 1.17147 1.21673 1.02522 1.22839 0.84761 0.98107 0.89738 1.59251 1.59171 1.07206 0.94374 1.22249 0.98588 0.88487 1.00655 1.19458 0.94875 0.82247 0.91437 0.96174 1.21847 0.98872 1.02254 0.96081 1.21033 1.36424 1.05444 0.92141 0.91378 1.24913 0.94896 0.95050 0.99051 1.69890 1.39258 1.08427 1.35045 0.86447 0.79088 0.77394 0.84203 1.20552 1.21198 1.19749 0.94034 0.89637 0.93837 0.92226 0.92959 0.90650 0.88996 0.86924 0.88840 0.83423 0.84044 0.82405 0.82126 0.88773 0.93527 0.94428 0.94771 0.88814 0.98074 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.55 10.70 -35.23 -0.38 -4.93 16 3 C 0.07 0.68 5.94 37.16 0.22 0.90 16 4 C -0.14 -1.63 5.31 -26.73 -0.14 -1.77 16 5 C 0.11 1.40 5.30 -4.04 -0.02 1.38 16 6 N -0.46 -7.79 2.83 -114.69 -0.32 -8.11 16 7 C 0.19 3.18 7.71 -153.78 -1.19 2.00 16 8 C -0.05 -0.63 5.88 -104.82 -0.62 -1.24 16 9 C -0.04 -0.45 9.85 -38.88 -0.38 -0.83 16 10 C -0.17 -1.47 10.10 -39.50 -0.40 -1.87 16 11 C 0.10 0.90 11.17 -17.47 -0.20 0.71 16 12 N -0.48 -5.57 10.35 -12.91 -0.13 -5.71 16 13 C 0.10 1.17 9.82 -17.13 -0.17 1.01 16 14 N -0.27 -5.29 12.08 32.59 0.39 -4.90 16 15 N -0.32 -6.97 12.02 30.31 0.36 -6.61 16 16 C 0.40 8.13 5.07 -318.91 -1.62 6.51 16 17 N -0.47 -9.95 4.65 -176.09 -0.82 -10.76 16 18 C 0.05 0.92 9.21 60.07 0.55 1.48 16 19 C 0.22 5.51 2.02 -68.87 -0.14 5.37 16 20 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 21 C -0.13 -3.16 8.84 37.15 0.33 -2.83 16 22 C -0.51 -13.17 7.87 -34.44 -0.27 -13.44 16 23 H 0.07 1.70 6.41 -52.48 -0.34 1.37 16 24 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 25 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 26 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.90 7.06 -51.93 -0.37 0.53 16 36 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.09 1.02 5.74 -51.93 -0.30 0.72 16 39 H 0.15 1.67 8.04 -52.49 -0.42 1.25 16 40 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.16 1.81 3.48 -52.49 -0.18 1.62 16 43 H 0.09 1.83 6.08 -51.93 -0.32 1.51 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.76 8.02 -51.93 -0.42 0.35 16 46 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 48 H 0.00 0.01 7.22 -51.93 -0.38 -0.37 16 49 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -31.70 399.17 -9.53 -41.23 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.24 Total: 2.04 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -3.02 Total: 0.30 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.11 Total: -60.00 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.70 -9.53 -41.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316038477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.463 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds