Wall clock time and date at job start Wed Apr 1 2020 04:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00234 * 2 1 4 4 C 1.53008 * 109.47244 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46907 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.46930 * 179.97438 * 5 4 3 7 7 C 1.37552 * 127.16290 * 94.58107 * 6 5 4 8 8 C 1.47856 * 126.46904 * 359.97438 * 7 6 5 9 9 C 1.39999 * 120.55964 * 161.11310 * 8 7 6 10 10 C 1.38347 * 118.29378 * 179.97438 * 9 8 7 11 11 C 1.38359 * 119.30665 * 0.02562 * 10 9 8 12 12 N 1.31908 * 121.07636 * 0.02562 * 11 10 9 13 13 C 1.31703 * 121.87646 * 359.67937 * 12 11 10 14 14 N 1.31258 * 107.05963 * 179.97438 * 7 6 5 15 15 N 1.28511 * 109.93156 * 359.75171 * 14 7 6 16 16 C 1.31370 * 110.08090 * 0.41349 * 15 14 7 17 17 N 1.38408 * 126.37188 * 179.85498 * 16 15 14 18 18 C 1.46905 * 111.00089 * 304.20816 * 17 16 15 19 19 C 1.46901 * 110.99851 * 68.15783 * 17 16 15 20 20 H 1.08996 * 109.47207 * 300.00111 * 19 17 16 21 21 C 1.52993 * 109.46965 * 60.00157 * 19 17 16 22 22 C 1.50704 * 109.47189 * 180.02562 * 19 17 16 23 23 H 1.08006 * 119.99906 * 359.97438 * 22 19 17 24 24 C 1.37871 * 120.00019 * 180.02562 * 22 19 17 25 25 N 1.31518 * 120.00334 * 359.97438 * 24 22 19 26 26 Si 1.86800 * 120.00019 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.47174 * 89.99616 * 26 24 22 28 28 H 1.48497 * 109.47334 * 209.99403 * 26 24 22 29 29 H 1.48502 * 109.47130 * 329.99807 * 26 24 22 30 30 H 1.09007 * 109.46727 * 60.00360 * 1 2 3 31 31 H 1.08994 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47134 * 300.00309 * 1 2 3 33 33 H 1.09000 * 109.47188 * 59.99656 * 3 2 1 34 34 H 1.08998 * 109.47044 * 299.99630 * 3 2 1 35 35 H 1.09000 * 109.46866 * 60.00001 * 4 3 2 36 36 H 1.08998 * 109.47241 * 300.00052 * 4 3 2 37 37 H 1.08999 * 109.46619 * 60.00336 * 5 4 3 38 38 H 1.08997 * 109.47608 * 300.00733 * 5 4 3 39 39 H 1.08001 * 120.85194 * 0.02562 * 9 8 7 40 40 H 1.08000 * 120.34967 * 180.02562 * 10 9 8 41 41 H 1.07999 * 119.45570 * 180.02562 * 11 10 9 42 42 H 1.07999 * 119.71798 * 180.29092 * 13 12 11 43 43 H 1.08995 * 109.47208 * 179.49812 * 18 17 16 44 44 H 1.09000 * 109.46608 * 299.49715 * 18 17 16 45 45 H 1.09000 * 109.47423 * 59.49504 * 18 17 16 46 46 H 1.09002 * 109.47340 * 60.00392 * 21 19 17 47 47 H 1.09001 * 109.47293 * 180.02562 * 21 19 17 48 48 H 1.08995 * 109.47422 * 299.99763 * 21 19 17 49 49 H 0.96995 * 120.00230 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 0.0006 5 6 4.1579 2.5823 0.0000 6 7 5.6183 2.4666 0.0012 7 6 6.4544 2.4874 -1.0908 8 6 6.0490 2.6316 -2.5054 9 6 6.9777 3.0280 -3.4751 10 6 6.5478 3.1475 -4.7847 11 6 5.2266 2.8745 -5.0913 12 7 4.3732 2.5038 -4.1563 13 6 4.7356 2.3704 -2.8972 14 7 7.6800 2.3551 -0.6400 15 7 7.6675 2.2596 0.6415 16 6 6.4325 2.3164 1.0860 17 7 6.0322 2.2433 2.4089 18 6 6.5325 1.0165 3.0434 19 6 6.4605 3.4341 3.1550 20 1 7.5472 3.5119 3.1225 21 6 5.8407 4.6820 2.5231 22 6 6.0082 3.3186 4.5880 23 1 5.4574 2.4479 4.9119 24 6 6.2968 4.3249 5.4851 25 7 6.9672 5.3854 5.0906 26 14 5.7357 4.1821 7.2611 27 1 6.7893 3.5064 8.0604 28 1 5.4893 5.5385 7.8130 29 1 4.4825 3.3877 7.3219 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8575 0.6435 -0.8891 36 1 3.8568 0.6438 0.8908 37 1 3.8359 3.1237 0.8896 38 1 3.8365 3.1228 -0.8903 39 1 8.0035 3.2345 -3.2078 40 1 7.2364 3.4506 -5.5595 41 1 4.8885 2.9666 -6.1129 42 1 4.0089 2.0602 -2.1609 43 1 6.2110 0.9887 4.0845 44 1 6.1361 0.1479 2.5174 45 1 7.6215 1.0024 2.9989 46 1 4.7540 4.6043 2.5557 47 1 6.1588 5.5656 3.0765 48 1 6.1681 4.7654 1.4869 49 1 7.1705 6.0932 5.7219 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316038477.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:14:30 Heat of formation + Delta-G solvation = 69.110465 kcal Electronic energy + Delta-G solvation = -31149.537694 eV Core-core repulsion = 27113.291999 eV Total energy + Delta-G solvation = -4036.245696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.07736 -41.03654 -39.05354 -38.85142 -36.99225 -35.02403 -34.08547 -33.00727 -32.74256 -31.42809 -30.02661 -28.32369 -27.56764 -26.49366 -26.03663 -25.25001 -24.57051 -23.50289 -23.06830 -22.00332 -21.06698 -18.68283 -18.45312 -18.24252 -17.78020 -17.44445 -17.14941 -17.02880 -16.83042 -16.66665 -16.18539 -15.79400 -15.53055 -15.34120 -15.06582 -14.88627 -14.67394 -14.22586 -14.09887 -13.93473 -13.72388 -13.44206 -13.13107 -13.04261 -12.86548 -12.73574 -12.71695 -12.55129 -12.28611 -12.22490 -12.21424 -12.08311 -12.06928 -11.76347 -11.50793 -11.12508 -11.10827 -10.62845 -10.61280 -10.60577 -10.55122 -9.65559 -9.49501 -8.16024 -6.30067 -0.42931 0.17438 0.84124 1.10569 1.45750 1.46597 1.57093 1.72021 2.40491 2.68188 2.77702 2.86923 3.08151 3.16203 3.36974 3.43733 3.73460 3.78894 3.88893 3.96736 3.99874 4.02279 4.13476 4.25902 4.34151 4.39971 4.44130 4.55784 4.57201 4.58700 4.62520 4.63766 4.70027 4.73736 4.81192 4.88928 4.89935 4.97303 5.00244 5.06574 5.08468 5.15393 5.32164 5.45323 5.59138 5.61298 5.78578 5.91580 6.11065 6.21349 6.54165 6.80181 6.83414 7.39341 7.55625 8.91141 Molecular weight = 345.19amu Principal moments of inertia in cm(-1) A = 0.009695 B = 0.003630 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.285312 B = 7711.021638 C = 9721.402349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.069 3.931 4 C -0.125 4.125 5 C 0.104 3.896 6 N -0.456 5.456 7 C 0.213 3.787 8 C -0.079 4.079 9 C -0.046 4.046 10 C -0.153 4.153 11 C 0.108 3.892 12 N -0.493 5.493 13 C 0.101 3.899 14 N -0.303 5.303 15 N -0.355 5.355 16 C 0.380 3.620 17 N -0.463 5.463 18 C 0.051 3.949 19 C 0.234 3.766 20 H -0.030 1.030 21 C -0.113 4.113 22 C -0.521 4.521 23 H 0.075 0.925 24 C 0.015 3.985 25 N -0.921 5.921 26 Si 0.968 3.032 27 H -0.278 1.278 28 H -0.285 1.285 29 H -0.261 1.261 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.143 0.857 40 H 0.180 0.820 41 H 0.198 0.802 42 H 0.167 0.833 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.019 0.981 46 H 0.046 0.954 47 H 0.068 0.932 48 H -0.001 1.001 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 -5.774 -18.890 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.008 4.008 4 C -0.164 4.164 5 C -0.017 4.017 6 N -0.148 5.148 7 C -0.053 4.053 8 C -0.084 4.084 9 C -0.073 4.073 10 C -0.172 4.172 11 C -0.049 4.049 12 N -0.201 5.201 13 C -0.058 4.058 14 N -0.144 5.144 15 N -0.199 5.199 16 C 0.023 3.977 17 N -0.189 5.189 18 C -0.096 4.096 19 C 0.128 3.872 20 H -0.012 1.012 21 C -0.172 4.172 22 C -0.559 4.559 23 H 0.093 0.907 24 C -0.184 4.184 25 N -0.560 5.560 26 Si 0.793 3.207 27 H -0.204 1.204 28 H -0.211 1.211 29 H -0.185 1.185 30 H 0.074 0.926 31 H 0.113 0.887 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.123 0.877 38 H 0.138 0.862 39 H 0.161 0.839 40 H 0.197 0.803 41 H 0.215 0.785 42 H 0.183 0.817 43 H 0.112 0.888 44 H 0.088 0.912 45 H 0.038 0.962 46 H 0.065 0.935 47 H 0.086 0.914 48 H 0.018 0.982 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.479 -6.071 -18.968 22.988 hybrid contribution 0.539 0.728 1.661 1.892 sum -10.940 -5.344 -17.308 21.161 Atomic orbital electron populations 1.22939 0.79129 1.03851 1.01099 1.87827 1.21759 1.28315 1.95686 1.22358 0.91209 0.85056 1.02194 1.21739 0.95495 0.95295 1.03840 1.22142 0.73809 0.99281 1.06494 1.46449 1.09391 1.53708 1.05215 1.22841 0.86853 1.06041 0.89558 1.18582 0.96837 1.06101 0.86871 1.21867 0.99827 0.92911 0.92730 1.22513 0.98329 1.00082 0.96271 1.23642 0.89664 0.91495 1.00088 1.67798 1.38196 1.13265 1.00817 1.23285 0.92831 0.95424 0.94244 1.74173 1.18224 1.18834 1.03139 1.74606 1.18668 1.22718 1.03867 1.22680 0.85155 1.00035 0.89831 1.59168 1.58660 1.06334 0.94753 1.22244 0.97551 0.88866 1.00924 1.19139 0.91862 0.84115 0.92079 1.01221 1.21594 0.99346 1.00856 0.95366 1.21305 1.36207 1.05631 0.92751 0.90674 1.25745 0.94870 0.94653 1.03148 1.70039 1.40391 1.09186 1.36376 0.85405 0.78942 0.77348 0.79042 1.20393 1.21123 1.18476 0.92572 0.88665 0.93281 0.91894 0.90635 0.90611 0.91309 0.87696 0.86181 0.83885 0.80252 0.78488 0.81652 0.88807 0.91151 0.96199 0.93482 0.91355 0.98195 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.07 10.70 -148.98 -1.59 -10.67 16 3 C 0.07 1.30 5.94 71.98 0.43 1.72 16 4 C -0.13 -2.90 5.31 30.60 0.16 -2.73 16 5 C 0.10 2.67 5.30 86.38 0.46 3.12 16 6 N -0.46 -15.66 2.83 -516.76 -1.46 -17.12 16 7 C 0.21 7.33 7.71 136.22 1.05 8.38 16 8 C -0.08 -2.07 5.88 -19.99 -0.12 -2.19 16 9 C -0.05 -0.99 9.85 22.72 0.22 -0.76 16 10 C -0.15 -2.11 10.10 22.32 0.23 -1.88 16 11 C 0.11 1.52 11.17 84.71 0.95 2.47 16 12 N -0.49 -9.85 10.35 -194.75 -2.01 -11.87 16 13 C 0.10 2.26 9.82 85.02 0.83 3.09 16 14 N -0.30 -12.58 12.08 -50.80 -0.61 -13.20 16 15 N -0.35 -16.50 12.02 -58.02 -0.70 -17.19 16 16 C 0.38 16.04 5.07 260.12 1.32 17.36 16 17 N -0.46 -20.18 4.65 -711.03 -3.31 -23.48 16 18 C 0.05 2.07 9.21 127.69 1.18 3.24 16 19 C 0.23 12.01 2.02 44.17 0.09 12.10 16 20 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 16 21 C -0.11 -5.61 8.84 71.98 0.64 -4.97 16 22 C -0.52 -27.34 7.87 25.60 0.20 -27.14 16 23 H 0.08 3.77 6.41 -2.91 -0.02 3.75 16 24 C 0.02 0.81 5.30 84.65 0.45 1.26 16 25 N -0.92 -52.39 11.32 21.45 0.24 -52.14 16 26 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 29 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.74 7.06 -2.39 -0.02 1.72 16 36 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.12 2.42 5.74 -2.39 -0.01 2.40 16 39 H 0.14 3.17 8.04 -2.91 -0.02 3.15 16 40 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 42 H 0.17 3.38 3.48 -2.91 -0.01 3.37 16 43 H 0.09 3.72 6.08 -2.39 -0.01 3.71 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.02 0.84 8.02 -2.39 -0.02 0.82 16 46 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 48 H 0.00 -0.05 7.22 -2.39 -0.02 -0.06 16 49 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -72.30 399.17 2.87 -69.43 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.96 Total: 17.60 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 9.33 Total: 14.68 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -7.85 Total: -135.00 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.59 Total: -10.67 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.30 2.87 -69.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316038477.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.540 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds